Wall clock time and date at job start Mon Mar 30 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46851 * 2 1 4 4 H 1.08996 * 110.28831 * 53.40620 * 3 2 1 5 5 C 1.54476 * 110.24380 * 291.42908 * 3 2 1 6 6 C 1.54786 * 101.69066 * 215.38982 * 5 3 2 7 7 H 1.08997 * 110.61998 * 266.39713 * 6 5 3 8 8 C 1.53005 * 110.42867 * 143.70970 * 6 5 3 9 9 C 1.51277 * 104.12086 * 25.10414 * 6 5 3 10 10 O 1.21282 * 124.94280 * 163.67180 * 9 6 5 11 11 N 1.34421 * 110.11694 * 343.40745 * 9 6 5 12 12 C 1.46497 * 124.34934 * 179.84390 * 11 9 6 13 13 C 1.53004 * 109.47090 * 89.90081 * 12 11 9 14 14 C 1.50697 * 109.47185 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99807 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00278 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00034 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47347 * 90.00065 * 18 16 14 20 20 H 1.48502 * 109.46928 * 210.00025 * 18 16 14 21 21 H 1.48497 * 109.47240 * 329.99519 * 18 16 14 22 22 H 1.09004 * 109.47023 * 185.88458 * 1 2 3 23 23 H 1.08999 * 109.47144 * 305.88006 * 1 2 3 24 24 H 1.09000 * 109.47746 * 65.88242 * 1 2 3 25 25 H 1.09000 * 109.47255 * 240.00322 * 2 1 3 26 26 H 1.09002 * 109.47477 * 119.99752 * 2 1 3 27 27 H 1.08996 * 110.97230 * 333.70007 * 5 3 2 28 28 H 1.09003 * 110.96954 * 97.43267 * 5 3 2 29 29 H 1.08997 * 109.47039 * 303.89917 * 8 6 5 30 30 H 1.09006 * 109.46987 * 63.89533 * 8 6 5 31 31 H 1.08999 * 109.47204 * 183.89860 * 8 6 5 32 32 H 1.09003 * 109.46725 * 209.89393 * 12 11 9 33 33 H 1.08995 * 109.47401 * 329.89501 * 12 11 9 34 34 H 1.09008 * 109.46523 * 299.99646 * 13 12 11 35 35 H 1.08995 * 109.47472 * 59.99464 * 13 12 11 36 36 H 0.96998 * 120.00756 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5913 2.0021 0.8208 5 6 1.7188 2.1230 -1.3491 6 6 2.9577 3.0298 -1.5458 7 1 2.7669 4.0300 -1.1569 8 6 3.3434 3.0938 -3.0250 9 6 4.0448 2.3484 -0.7442 10 8 5.2319 2.5715 -0.8536 11 7 3.5032 1.4639 0.1109 12 6 4.2745 0.6290 1.0351 13 6 4.4533 1.3686 2.3625 14 6 5.2472 0.5100 3.3130 15 1 5.5896 -0.4658 3.0016 16 6 5.5364 0.9702 4.5800 17 7 5.1199 2.1586 4.9591 18 14 6.5199 -0.0945 5.7585 19 1 7.9677 0.1917 5.5935 20 1 6.1121 0.2056 7.1545 21 1 6.2618 -1.5270 5.4645 22 1 -0.3633 -1.0223 0.1054 23 1 -0.3633 0.6023 0.8327 24 1 -0.3634 0.4199 -0.9379 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6394 1.3863 -2.1485 28 1 0.8088 2.7189 -1.2787 29 1 3.5099 2.0844 -3.4010 30 1 2.5386 3.5638 -3.5903 31 1 4.2562 3.6786 -3.1376 32 1 3.7430 -0.3066 1.2092 33 1 5.2523 0.4164 0.6030 34 1 4.9848 2.3043 2.1883 35 1 3.4755 1.5812 2.7946 36 1 5.3237 2.4825 5.8503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685973243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:44 Heat of formation + Delta-G solvation = -81.453315 kcal Electronic energy + Delta-G solvation = -15973.712344 eV Core-core repulsion = 13455.922535 eV Total energy + Delta-G solvation = -2517.789809 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63075 -37.97381 -36.13635 -34.57248 -33.99031 -31.62034 -28.83486 -27.04372 -25.94161 -23.79067 -22.99631 -21.51140 -19.89075 -18.74845 -17.82306 -17.10968 -16.60720 -16.04146 -15.74683 -15.16165 -14.69211 -14.56739 -14.41738 -14.06994 -13.79032 -13.33701 -13.20816 -12.97056 -12.88309 -12.64572 -12.60176 -12.24089 -12.07964 -12.01390 -11.91086 -11.67413 -11.41820 -11.32462 -10.66355 -10.59032 -9.57452 -8.26418 -6.39961 1.36980 1.39954 1.50700 1.63604 2.14177 2.39807 3.06854 3.35461 3.55206 3.78617 4.10459 4.22484 4.25176 4.31001 4.48260 4.55829 4.60176 4.64714 4.82513 4.86226 4.88447 5.01654 5.09138 5.17854 5.21883 5.26475 5.33729 5.36580 5.42597 5.50119 5.59847 5.80263 6.12394 6.34326 6.75258 7.24097 7.30340 8.86011 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.007080 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.074485 B = 3953.827853 C = 4532.636901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.118 3.882 4 H 0.070 0.930 5 C -0.103 4.103 6 C -0.122 4.122 7 H 0.113 0.887 8 C -0.126 4.126 9 C 0.493 3.507 10 O -0.593 6.593 11 N -0.613 5.613 12 C 0.140 3.860 13 C 0.025 3.975 14 C -0.547 4.547 15 H 0.066 0.934 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.972 3.028 19 H -0.276 1.276 20 H -0.278 1.278 21 H -0.257 1.257 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.049 0.951 34 H -0.029 1.029 35 H -0.001 1.001 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 -2.537 -13.673 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C 0.016 3.984 4 H 0.088 0.912 5 C -0.141 4.141 6 C -0.143 4.143 7 H 0.131 0.869 8 C -0.183 4.183 9 C 0.282 3.718 10 O -0.475 6.475 11 N -0.344 5.344 12 C 0.018 3.982 13 C -0.013 4.013 14 C -0.585 4.585 15 H 0.084 0.916 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.796 3.204 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.180 1.180 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.141 0.859 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.067 0.933 34 H -0.011 1.011 35 H 0.017 0.983 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.119 -2.376 -13.531 18.320 hybrid contribution 1.073 -0.090 1.261 1.658 sum -11.047 -2.466 -12.270 16.693 Atomic orbital electron populations 1.21677 0.92519 1.02617 1.03033 1.21811 0.98224 0.94261 1.02327 1.22077 0.78145 0.98614 0.99565 0.91182 1.22888 0.97485 0.98513 0.95168 1.22071 0.93822 1.00744 0.97641 0.86866 1.21599 1.02389 1.02485 0.91857 1.21921 0.89553 0.79634 0.80692 1.90634 1.19308 1.66885 1.70646 1.48741 1.08830 1.39830 1.37041 1.21340 0.94473 0.93590 0.88748 1.19192 0.95196 0.94543 0.92343 1.21543 1.35007 1.03249 0.98692 0.91572 1.26048 0.96930 0.96504 1.00319 1.70115 1.47261 1.19744 1.20189 0.85343 0.78382 0.79265 0.77428 1.20143 1.20318 1.18043 0.91755 0.92747 0.90250 0.90774 0.93127 0.87837 0.85926 0.92536 0.88141 0.93624 0.89224 0.93251 1.01072 0.98297 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.69 71.98 0.70 -1.54 16 2 C -0.13 -2.90 5.16 30.60 0.16 -2.74 16 3 C 0.12 3.18 3.33 45.45 0.15 3.33 16 4 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 5 C -0.10 -1.87 5.53 31.71 0.18 -1.69 16 6 C -0.12 -3.08 3.54 -10.75 -0.04 -3.11 16 7 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 8 C -0.13 -2.61 9.08 71.98 0.65 -1.95 16 9 C 0.49 19.49 7.45 87.90 0.65 20.15 16 10 O -0.59 -29.66 17.44 -3.03 -0.05 -29.71 16 11 N -0.61 -23.43 2.78 -794.17 -2.21 -25.64 16 12 C 0.14 6.37 5.65 86.38 0.49 6.86 16 13 C 0.03 1.43 5.30 29.85 0.16 1.59 16 14 C -0.55 -32.41 9.11 25.60 0.23 -32.18 16 15 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.00 0.00 5.46 84.65 0.46 0.46 16 17 N -0.93 -58.90 13.29 21.44 0.28 -58.61 16 18 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 22 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 24 H 0.08 0.90 7.73 -2.39 -0.02 0.88 16 25 H 0.07 1.55 8.01 -2.39 -0.02 1.53 16 26 H 0.05 1.39 6.61 -2.39 -0.02 1.37 16 27 H 0.10 1.49 7.59 -2.39 -0.02 1.47 16 28 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 3.62 6.28 -2.39 -0.01 3.60 16 33 H 0.05 2.40 7.93 -2.39 -0.02 2.38 16 34 H -0.03 -1.92 8.14 -2.38 -0.02 -1.93 16 35 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -77.40 295.26 4.87 -72.53 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.03 Total: 4.90 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.79 Total: -10.84 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.93 Total: -84.26 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.05 Total: -29.71 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.40 4.87 -72.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685973243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.921 kcal (2) G-P(sol) polarization free energy of solvation -77.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds