Wall clock time and date at job start Mon Mar 30 2020 03:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47331 * 2 1 4 4 H 1.08997 * 109.47267 * 174.07571 * 3 2 1 5 5 C 1.50707 * 109.46620 * 54.08193 * 3 2 1 6 6 H 1.08005 * 119.99415 * 240.00072 * 5 3 2 7 7 C 1.37871 * 120.00381 * 60.00561 * 5 3 2 8 8 N 1.31522 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00032 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47310 * 60.00034 * 9 7 5 11 11 H 1.48504 * 109.47155 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47275 * 299.99444 * 9 7 5 13 13 N 1.46894 * 109.46988 * 294.08520 * 3 2 1 14 14 C 1.46905 * 110.99762 * 275.74891 * 13 3 2 15 15 C 1.53005 * 109.47163 * 176.34103 * 14 13 3 16 16 C 1.55702 * 120.53827 * 247.09587 * 15 14 13 17 17 C 1.53002 * 60.18319 * 248.08298 * 16 15 14 18 18 H 1.08996 * 119.80696 * 112.71894 * 17 16 15 19 19 C 1.54479 * 118.06157 * 268.98189 * 17 16 15 20 20 O 1.44429 * 104.80518 * 40.13688 * 19 17 16 21 21 C 1.44424 * 105.27193 * 40.51501 * 20 19 17 22 22 H 1.08998 * 109.47483 * 298.56728 * 1 2 3 23 23 H 1.09004 * 109.46923 * 58.56738 * 1 2 3 24 24 H 1.09001 * 109.46736 * 178.56352 * 1 2 3 25 25 H 1.09002 * 109.47913 * 239.99732 * 2 1 3 26 26 H 1.09005 * 109.46992 * 119.99709 * 2 1 3 27 27 H 0.96995 * 119.99952 * 180.02562 * 8 7 5 28 28 H 1.00906 * 111.00004 * 39.69769 * 13 3 2 29 29 H 1.08995 * 109.47228 * 56.33456 * 14 13 3 30 30 H 1.09004 * 109.46839 * 296.33668 * 14 13 3 31 31 H 1.09003 * 118.08073 * 140.85597 * 16 15 14 32 32 H 1.08999 * 117.02153 * 355.76485 * 16 15 14 33 33 H 1.08998 * 110.37067 * 281.30709 * 19 17 16 34 34 H 1.09001 * 110.46380 * 159.01886 * 19 17 16 35 35 H 1.08995 * 110.37364 * 78.31737 * 21 20 19 36 36 H 1.09006 * 110.36898 * 200.54520 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1061 5 6 1.4216 2.1939 1.1507 6 1 0.8147 3.0671 0.9616 7 6 1.6306 1.7668 2.4449 8 7 2.3693 0.7033 2.6751 9 14 0.8646 2.6986 3.8711 10 1 -0.6134 2.6966 3.7270 11 1 1.2377 2.0411 5.1493 12 1 1.3601 4.0985 3.8710 13 7 1.6704 2.0926 -1.2644 14 6 2.6517 1.7943 -2.3161 15 6 2.1868 2.4108 -3.6371 16 6 1.7646 1.5022 -4.8289 17 6 3.0367 2.3464 -4.9292 18 1 4.0102 1.8574 -4.9633 19 6 2.9213 3.7665 -5.5263 20 8 1.6894 4.2942 -4.9880 21 6 1.6609 3.8631 -3.6098 22 1 -0.3634 0.4914 0.9025 23 1 -0.3633 0.5359 -0.8769 24 1 -0.3633 -1.0274 -0.0258 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.5160 0.4026 3.5856 28 1 0.7407 1.8243 -1.5506 29 1 2.7436 0.7144 -2.4316 30 1 3.6191 2.2138 -2.0400 31 1 0.9091 1.8096 -5.4305 32 1 1.8846 0.4268 -4.6985 33 1 2.8700 3.7177 -6.6140 34 1 3.7658 4.3809 -5.2142 35 1 2.3123 4.4912 -3.0022 36 1 0.6415 3.8904 -3.2247 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689221676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:30 Heat of formation + Delta-G solvation = -17.459249 kcal Electronic energy + Delta-G solvation = -15993.905410 eV Core-core repulsion = 13478.890592 eV Total energy + Delta-G solvation = -2515.014818 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.11871 -36.52617 -34.45034 -32.31871 -30.59220 -28.42852 -26.57217 -25.54306 -24.21435 -23.17023 -20.57660 -19.31436 -19.10941 -16.57207 -15.83878 -15.56501 -15.12158 -14.73782 -14.24436 -13.82845 -13.24307 -13.11730 -12.74278 -12.44337 -12.30546 -11.91384 -11.67429 -11.34677 -11.19461 -10.86123 -10.66350 -10.53152 -10.15973 -9.98164 -9.81392 -9.68593 -9.51776 -9.21703 -8.96159 -8.33967 -7.22684 -5.97184 -3.98744 3.34712 3.39041 3.42275 3.56299 4.04761 4.43586 4.63755 4.74446 4.95545 5.03888 5.34637 5.43002 5.53090 5.59909 5.73197 5.84933 5.88658 5.94605 6.15852 6.21080 6.25746 6.33792 6.38941 6.39910 6.57677 6.88934 6.90377 7.27348 7.28849 7.50728 7.70003 7.89158 8.28357 8.54615 8.62390 9.06646 9.64973 11.09992 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040504 B = 0.006521 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.125725 B = 4292.468146 C = 4604.015703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.108 3.892 15 C -0.158 4.158 16 C -0.135 4.135 17 C -0.204 4.204 18 H 0.118 0.882 19 C 0.074 3.926 20 O -0.383 6.383 21 C 0.092 3.908 22 H 0.066 0.934 23 H 0.030 0.970 24 H 0.021 0.979 25 H 0.009 0.991 26 H 0.092 0.908 27 H 0.259 0.741 28 H 0.328 0.672 29 H 0.023 0.977 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 1.318 -12.441 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.312 5.312 14 C -0.022 4.022 15 C -0.158 4.158 16 C -0.172 4.172 17 C -0.223 4.223 18 H 0.136 0.864 19 C -0.003 4.003 20 O -0.302 6.302 21 C 0.016 3.984 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.028 0.972 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.611 1.966 -12.205 12.377 hybrid contribution -0.270 -0.797 0.763 1.136 sum 0.340 1.169 -11.441 11.506 Atomic orbital electron populations 1.21559 0.97623 0.97967 1.01297 1.22100 0.95089 1.01158 1.00100 1.19195 0.96018 0.88647 0.85366 0.95027 1.21021 1.30499 1.11518 0.89726 0.92055 1.24910 0.95570 0.95173 0.98705 1.69876 1.39268 1.24130 1.20408 0.86628 0.79624 0.80022 0.81511 1.20378 1.21540 1.20350 1.60854 1.04011 1.63072 1.03229 1.21157 0.96855 0.96173 0.87987 1.23840 1.04254 0.97312 0.90431 1.23324 0.97297 0.96836 0.99743 1.24130 0.97283 0.98484 1.02440 0.86449 1.22830 0.87880 0.90862 0.98709 1.89115 1.39804 1.75613 1.25623 1.22720 1.02796 0.90732 0.82185 0.91517 0.95122 0.95965 0.97188 0.89009 0.93082 0.85379 0.95844 0.91447 0.88701 0.88265 0.89419 0.91706 0.90877 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.39 37.16 0.35 -2.35 16 2 C -0.14 -3.36 5.50 -26.73 -0.15 -3.50 16 3 C 0.22 5.23 2.33 -68.86 -0.16 5.07 16 4 H 0.03 0.86 7.86 -51.93 -0.41 0.45 16 5 C -0.49 -13.05 7.35 -34.44 -0.25 -13.30 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.45 16 8 N -0.90 -25.16 11.39 55.43 0.63 -24.52 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -13.95 5.85 -107.94 -0.63 -14.58 16 14 C 0.11 1.91 5.88 -3.82 -0.02 1.88 16 15 C -0.16 -2.35 2.81 -151.34 -0.42 -2.78 16 16 C -0.14 -1.76 9.84 -25.29 -0.25 -2.01 16 17 C -0.20 -2.57 7.09 -88.90 -0.63 -3.20 16 18 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 19 C 0.07 0.89 7.53 37.93 0.29 1.18 16 20 O -0.38 -5.72 11.34 -35.23 -0.40 -6.12 16 21 C 0.09 1.40 6.86 37.93 0.26 1.66 16 22 H 0.07 1.56 7.05 -51.93 -0.37 1.19 16 23 H 0.03 0.59 6.42 -51.93 -0.33 0.26 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.01 0.21 7.24 -51.93 -0.38 -0.17 16 26 H 0.09 2.39 6.25 -51.93 -0.32 2.07 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 28 H 0.33 6.52 6.56 -39.29 -0.26 6.26 16 29 H 0.02 0.42 7.17 -51.93 -0.37 0.05 16 30 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 31 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 287.11 15.07 4.33 4.33 Total: -1.00 -27.49 287.11 -7.96 -35.45 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.78 Total: 5.13 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.09 Total: -15.90 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.00 Total: -39.10 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.40 Total: -6.12 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.49 -7.96 -35.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689221676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.990 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds