Wall clock time and date at job start Mon Mar 30 2020 03:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47331 * 2 1 4 4 H 1.08997 * 109.47267 * 174.07571 * 3 2 1 5 5 C 1.50707 * 109.46620 * 54.08193 * 3 2 1 6 6 H 1.08005 * 119.99415 * 240.00072 * 5 3 2 7 7 C 1.37871 * 120.00381 * 60.00561 * 5 3 2 8 8 N 1.31522 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00032 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47310 * 60.00034 * 9 7 5 11 11 H 1.48504 * 109.47155 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47275 * 299.99444 * 9 7 5 13 13 N 1.46894 * 109.46988 * 294.08520 * 3 2 1 14 14 C 1.46905 * 110.99762 * 275.74891 * 13 3 2 15 15 C 1.53005 * 109.47163 * 176.34103 * 14 13 3 16 16 C 1.55702 * 120.53827 * 247.09587 * 15 14 13 17 17 C 1.53002 * 60.18319 * 248.08298 * 16 15 14 18 18 H 1.08996 * 119.80696 * 112.71894 * 17 16 15 19 19 C 1.54479 * 118.06157 * 268.98189 * 17 16 15 20 20 O 1.44429 * 104.80518 * 40.13688 * 19 17 16 21 21 C 1.44424 * 105.27193 * 40.51501 * 20 19 17 22 22 H 1.08998 * 109.47483 * 298.56728 * 1 2 3 23 23 H 1.09004 * 109.46923 * 58.56738 * 1 2 3 24 24 H 1.09001 * 109.46736 * 178.56352 * 1 2 3 25 25 H 1.09002 * 109.47913 * 239.99732 * 2 1 3 26 26 H 1.09005 * 109.46992 * 119.99709 * 2 1 3 27 27 H 0.96995 * 119.99952 * 180.02562 * 8 7 5 28 28 H 1.00906 * 111.00004 * 39.69769 * 13 3 2 29 29 H 1.08995 * 109.47228 * 56.33456 * 14 13 3 30 30 H 1.09004 * 109.46839 * 296.33668 * 14 13 3 31 31 H 1.09003 * 118.08073 * 140.85597 * 16 15 14 32 32 H 1.08999 * 117.02153 * 355.76485 * 16 15 14 33 33 H 1.08998 * 110.37067 * 281.30709 * 19 17 16 34 34 H 1.09001 * 110.46380 * 159.01886 * 19 17 16 35 35 H 1.08995 * 110.37364 * 78.31737 * 21 20 19 36 36 H 1.09006 * 110.36898 * 200.54520 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1061 5 6 1.4216 2.1939 1.1507 6 1 0.8147 3.0671 0.9616 7 6 1.6306 1.7668 2.4449 8 7 2.3693 0.7033 2.6751 9 14 0.8646 2.6986 3.8711 10 1 -0.6134 2.6966 3.7270 11 1 1.2377 2.0411 5.1493 12 1 1.3601 4.0985 3.8710 13 7 1.6704 2.0926 -1.2644 14 6 2.6517 1.7943 -2.3161 15 6 2.1868 2.4108 -3.6371 16 6 1.7646 1.5022 -4.8289 17 6 3.0367 2.3464 -4.9292 18 1 4.0102 1.8574 -4.9633 19 6 2.9213 3.7665 -5.5263 20 8 1.6894 4.2942 -4.9880 21 6 1.6609 3.8631 -3.6098 22 1 -0.3634 0.4914 0.9025 23 1 -0.3633 0.5359 -0.8769 24 1 -0.3633 -1.0274 -0.0258 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.5160 0.4026 3.5856 28 1 0.7407 1.8243 -1.5506 29 1 2.7436 0.7144 -2.4316 30 1 3.6191 2.2138 -2.0400 31 1 0.9091 1.8096 -5.4305 32 1 1.8846 0.4268 -4.6985 33 1 2.8700 3.7177 -6.6140 34 1 3.7658 4.3809 -5.2142 35 1 2.3123 4.4912 -3.0022 36 1 0.6415 3.8904 -3.2247 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689221676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:29 Heat of formation + Delta-G solvation = -34.600141 kcal Electronic energy + Delta-G solvation = -15994.648695 eV Core-core repulsion = 13478.890592 eV Total energy + Delta-G solvation = -2515.758103 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.22778 -38.26610 -35.72360 -34.15615 -32.31292 -29.69071 -28.32487 -26.66003 -25.87290 -24.96797 -21.64872 -21.09016 -20.36586 -18.24954 -17.27204 -16.90000 -16.58687 -16.37160 -15.65482 -15.36546 -14.80875 -14.63148 -14.29433 -13.97914 -13.57512 -13.46289 -13.18315 -12.87971 -12.71897 -12.44567 -12.35491 -12.22801 -11.78135 -11.74824 -11.43685 -11.05899 -10.93065 -10.88999 -10.41919 -10.29842 -8.92053 -8.04533 -6.12673 1.45092 1.45548 1.52997 2.44443 2.50994 2.98330 3.24607 3.39889 3.66490 3.87837 3.93739 4.13458 4.34984 4.53385 4.56061 4.59612 4.64964 4.70591 4.77543 4.79471 4.85850 4.95211 4.97823 5.04301 5.12236 5.21079 5.37652 5.43993 5.69549 5.75412 5.79296 5.87123 6.33121 6.69743 6.86599 7.00464 7.55209 9.00879 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040504 B = 0.006521 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.125725 B = 4292.468146 C = 4604.015703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.221 3.779 4 H -0.004 1.004 5 C -0.500 4.500 6 H 0.053 0.947 7 C 0.014 3.986 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.116 3.884 15 C -0.182 4.182 16 C -0.124 4.124 17 C -0.185 4.185 18 H 0.133 0.867 19 C 0.068 3.932 20 O -0.395 6.395 21 C 0.096 3.904 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.025 0.975 26 H 0.060 0.940 27 H 0.258 0.742 28 H 0.333 0.667 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 1.353 -13.902 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 C 0.113 3.887 4 H 0.014 0.986 5 C -0.539 4.539 6 H 0.071 0.929 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.312 5.312 14 C -0.014 4.014 15 C -0.183 4.183 16 C -0.161 4.161 17 C -0.203 4.203 18 H 0.151 0.849 19 C -0.008 4.008 20 O -0.315 6.315 21 C 0.020 3.980 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.152 0.848 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.139 2.007 -13.686 13.833 hybrid contribution -0.072 -0.801 1.143 1.398 sum 0.067 1.206 -12.543 12.601 Atomic orbital electron populations 1.21442 0.95918 0.99296 1.00882 1.21942 0.96521 1.00019 0.99252 1.18940 0.93622 0.89509 0.86666 0.98583 1.21261 1.30329 1.11410 0.90884 0.92872 1.25580 0.96007 0.95902 1.00945 1.70008 1.40264 1.25259 1.20677 0.85729 0.79095 0.78759 0.78732 1.19657 1.21326 1.20191 1.60697 1.04899 1.62746 1.02877 1.21043 0.95588 0.96230 0.88530 1.23607 1.07113 0.97586 0.90012 1.23401 0.97758 0.97132 0.97760 1.24288 0.97839 0.98713 0.99509 0.84871 1.23088 0.87196 0.90442 1.00081 1.89101 1.41265 1.75954 1.25152 1.22551 1.02045 0.90903 0.82512 0.93994 0.93243 0.93882 0.95639 0.92136 0.93243 0.84791 0.95866 0.92779 0.88232 0.87302 0.86928 0.90711 0.92086 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.39 71.98 0.68 -4.20 16 2 C -0.14 -6.37 5.50 30.59 0.17 -6.20 16 3 C 0.22 10.90 2.33 44.17 0.10 11.00 16 4 H 0.00 -0.21 7.86 -2.39 -0.02 -0.23 16 5 C -0.50 -27.04 7.35 25.60 0.19 -26.85 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.75 5.22 84.65 0.44 1.19 16 8 N -0.92 -52.56 11.39 21.45 0.24 -52.31 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.68 -27.87 5.85 -495.43 -2.90 -30.77 16 14 C 0.12 4.02 5.88 86.30 0.51 4.53 16 15 C -0.18 -5.17 2.81 -50.13 -0.14 -5.31 16 16 C -0.12 -2.88 9.84 31.53 0.31 -2.57 16 17 C -0.18 -4.12 7.09 -9.68 -0.07 -4.19 16 18 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 19 C 0.07 1.45 7.53 72.48 0.55 2.00 16 20 O -0.40 -11.11 11.34 -148.98 -1.69 -12.80 16 21 C 0.10 2.86 6.86 72.48 0.50 3.36 16 22 H 0.04 1.93 7.05 -2.39 -0.02 1.91 16 23 H 0.05 1.83 6.42 -2.38 -0.02 1.81 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.02 1.07 7.24 -2.39 -0.02 1.05 16 26 H 0.06 3.20 6.25 -2.38 -0.01 3.19 16 27 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.33 12.98 6.56 -89.69 -0.59 12.39 16 29 H 0.02 0.81 7.17 -2.39 -0.02 0.79 16 30 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 31 H 0.10 2.25 8.09 -2.39 -0.02 2.24 16 32 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 Total: -1.00 -58.60 287.11 1.38 -57.22 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.46 Total: 20.14 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.23 Total: -27.24 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.65 Total: -83.08 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.69 Total: -12.80 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -58.60 1.38 -57.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689221676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.623 kcal (2) G-P(sol) polarization free energy of solvation -58.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds