Wall clock time and date at job start Mon Mar 30 2020 03:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47079 * 2 1 4 4 N 1.46496 * 109.47252 * 175.31920 * 3 2 1 5 5 C 1.37104 * 119.99692 * 86.06446 * 4 3 2 6 6 H 1.07998 * 119.99594 * 171.00476 * 5 4 3 7 7 C 1.38952 * 120.00044 * 351.01433 * 5 4 3 8 8 N 1.31405 * 119.99739 * 8.08306 * 7 5 4 9 9 Si 1.86797 * 119.99817 * 188.08603 * 7 5 4 10 10 H 1.48500 * 109.47278 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47037 * 119.99554 * 9 7 5 12 12 H 1.48498 * 109.47138 * 239.99749 * 9 7 5 13 13 C 1.34779 * 120.00301 * 266.07357 * 4 3 2 14 14 O 1.21295 * 119.99819 * 173.58407 * 13 4 3 15 15 C 1.50697 * 119.99628 * 353.57893 * 13 4 3 16 16 C 1.52997 * 115.55403 * 62.02023 * 15 13 4 17 17 C 1.53004 * 117.49827 * 276.30887 * 15 13 4 18 18 C 1.53003 * 117.49377 * 207.68741 * 15 13 4 19 19 H 1.08994 * 117.50207 * 0.02562 * 18 15 13 20 20 C 1.53001 * 117.49756 * 214.97997 * 18 15 13 21 21 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46824 * 299.99913 * 1 2 3 23 23 H 1.09001 * 109.46742 * 59.99789 * 1 2 3 24 24 H 1.08996 * 109.46824 * 240.00087 * 2 1 3 25 25 H 1.09001 * 109.46742 * 120.00211 * 2 1 3 26 26 H 1.09010 * 109.46687 * 55.32313 * 3 2 1 27 27 H 1.08999 * 109.47120 * 295.32710 * 3 2 1 28 28 H 0.97003 * 119.99754 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46896 * 44.33111 * 16 15 13 30 30 H 1.08996 * 109.47395 * 164.33034 * 16 15 13 31 31 H 1.09003 * 109.47063 * 284.33735 * 16 15 13 32 32 H 1.08991 * 117.49966 * 359.97438 * 17 15 13 33 33 H 1.09002 * 117.49997 * 145.02912 * 17 15 13 34 34 H 1.09003 * 109.47413 * 60.00140 * 20 18 15 35 35 H 1.08998 * 109.47492 * 180.02562 * 20 18 15 36 36 H 1.09005 * 109.47384 * 300.00273 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5007 1.4441 0.1127 5 6 4.2752 1.3311 -1.0130 6 1 5.3434 1.4773 -0.9503 7 6 3.6857 1.0288 -2.2344 8 7 2.3765 1.0076 -2.3447 9 14 4.7544 0.6524 -3.7195 10 1 6.1859 0.7422 -3.3348 11 1 4.4578 -0.7181 -4.2082 12 1 4.4693 1.6345 -4.7962 13 6 4.0832 1.5564 1.3230 14 8 5.2859 1.4411 1.4302 15 6 3.2401 1.8252 2.5428 16 6 2.2081 0.7479 2.8823 17 6 2.8668 3.2795 2.8370 18 6 3.9003 2.5636 3.7089 19 1 4.9442 2.8552 3.5937 20 6 3.4775 2.1685 5.1253 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6099 1.9799 0.8452 27 1 1.7467 1.9316 -0.9289 28 1 1.9649 0.7962 -3.1973 29 1 2.6670 -0.2365 2.7906 30 1 1.8561 0.8911 3.9038 31 1 1.3660 0.8217 2.1940 32 1 3.2313 4.0418 2.1485 33 1 1.8857 3.4691 3.2724 34 1 3.6989 1.1139 5.2898 35 1 4.0244 2.7722 5.8495 36 1 2.4075 2.3381 5.2457 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704355942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:22 Heat of formation + Delta-G solvation = -4.059277 kcal Electronic energy + Delta-G solvation = -16672.102626 eV Core-core repulsion = 14157.668875 eV Total energy + Delta-G solvation = -2514.433752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37516 -36.63812 -35.20762 -32.29254 -31.25630 -28.99270 -27.50217 -25.80870 -24.53095 -21.86176 -20.53729 -20.26193 -17.91149 -16.84446 -15.97130 -15.11700 -14.21613 -14.14798 -13.78458 -13.48812 -13.16762 -12.96770 -12.48013 -12.30101 -11.90534 -11.73604 -11.60547 -11.26568 -11.16344 -11.03237 -10.82422 -10.58235 -10.34632 -10.23220 -10.02317 -9.64970 -9.60148 -9.16241 -8.78975 -8.27526 -7.65549 -6.07772 -3.78260 3.15927 3.27139 3.34537 3.82493 4.11077 4.28366 4.85244 5.14360 5.21017 5.27673 5.52416 5.65242 5.72990 5.99967 6.02449 6.02991 6.07502 6.10087 6.21888 6.22910 6.32169 6.38954 6.48609 6.57101 6.66418 6.74362 6.82495 6.98599 7.01947 7.46218 7.69802 7.80191 8.18709 8.64868 9.24254 9.54237 10.08092 10.72081 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.010038 C = 0.008161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.110203 B = 2788.834667 C = 3430.303612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.108 3.892 4 N -0.440 5.440 5 C -0.290 4.290 6 H 0.100 0.900 7 C 0.023 3.977 8 N -0.878 5.878 9 Si 0.927 3.073 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.476 3.524 14 O -0.595 6.595 15 C -0.129 4.129 16 C -0.119 4.119 17 C -0.163 4.163 18 C -0.132 4.132 19 H 0.107 0.893 20 C -0.116 4.116 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.135 0.865 28 H 0.262 0.738 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 1.039 6.886 8.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C -0.015 4.015 4 N -0.156 5.156 5 C -0.418 4.418 6 H 0.118 0.882 7 C -0.177 4.177 8 N -0.520 5.520 9 Si 0.755 3.245 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.263 3.737 14 O -0.480 6.480 15 C -0.132 4.132 16 C -0.176 4.176 17 C -0.201 4.201 18 C -0.151 4.151 19 H 0.125 0.875 20 C -0.173 4.173 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.152 0.848 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.886 0.942 6.729 8.369 hybrid contribution 0.297 -0.281 -0.810 0.907 sum -4.589 0.661 5.919 7.519 Atomic orbital electron populations 1.21621 0.97514 0.99780 1.00657 1.21976 0.93697 0.98911 1.01479 1.22186 0.79727 0.96637 1.02931 1.43730 1.06138 1.61326 1.04442 1.19839 0.93015 1.44029 0.84955 0.88180 1.25234 0.96130 0.97220 0.99078 1.69922 1.08158 1.48943 1.25008 0.85830 0.80090 0.77993 0.80634 1.19452 1.20733 1.20894 1.19028 0.87418 0.84064 0.83154 1.90492 1.15206 1.56792 1.85549 1.21376 1.00819 0.94182 0.96829 1.21670 0.97769 0.97180 1.00981 1.23111 0.99348 0.94548 1.03057 1.22315 0.98479 1.03148 0.91164 0.87495 1.21332 1.00506 1.01208 0.94276 0.94359 0.94376 0.92612 0.89849 0.94759 0.95000 0.84814 0.92617 0.92350 0.92721 0.90504 0.88995 0.88897 0.92285 0.92544 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.81 37.16 0.36 -2.00 16 2 C -0.12 -2.57 4.73 -26.73 -0.13 -2.70 16 3 C 0.11 2.45 4.14 -4.04 -0.02 2.44 16 4 N -0.44 -11.41 2.63 -114.81 -0.30 -11.71 16 5 C -0.29 -8.11 9.50 -14.93 -0.14 -8.25 16 6 H 0.10 2.97 7.25 -52.49 -0.38 2.59 16 7 C 0.02 0.61 5.27 -17.47 -0.09 0.52 16 8 N -0.88 -22.05 7.63 55.50 0.42 -21.62 16 9 Si 0.93 20.80 29.56 -169.99 -5.02 15.77 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.48 12.11 6.95 -10.99 -0.08 12.03 16 14 O -0.59 -17.29 16.24 5.54 0.09 -17.20 16 15 C -0.13 -2.54 1.42 -155.66 -0.22 -2.76 16 16 C -0.12 -2.04 7.72 37.16 0.29 -1.75 16 17 C -0.16 -2.77 9.21 -26.73 -0.25 -3.02 16 18 C -0.13 -2.29 5.92 -90.61 -0.54 -2.83 16 19 H 0.11 2.04 7.93 -51.93 -0.41 1.63 16 20 C -0.12 -1.56 8.75 37.16 0.33 -1.23 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.04 0.58 7.52 -51.93 -0.39 0.19 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.08 2.01 6.37 -51.93 -0.33 1.68 16 25 H 0.03 0.71 5.82 -51.93 -0.30 0.41 16 26 H 0.03 0.66 5.10 -51.92 -0.26 0.39 16 27 H 0.13 3.32 5.43 -52.13 -0.28 3.04 16 28 H 0.26 6.29 8.31 -40.82 -0.34 5.95 16 29 H 0.06 1.05 7.61 -51.93 -0.40 0.66 16 30 H 0.05 0.78 6.20 -51.93 -0.32 0.45 16 31 H 0.08 1.30 3.99 -51.93 -0.21 1.09 16 32 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 33 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.65 7.27 -51.93 -0.38 0.27 16 LS Contribution 278.39 15.07 4.20 4.20 Total: -1.00 -29.37 278.39 -6.43 -35.80 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.33 Total: 4.33 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.48 Total: -9.57 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.12 Total: -33.34 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.09 Total: -17.20 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.37 -6.43 -35.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704355942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.737 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds