Wall clock time and date at job start Mon Mar 30 2020 03:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47048 * 2 1 4 4 C 1.50703 * 109.46720 * 240.00746 * 2 1 3 5 5 H 1.08001 * 120.00131 * 239.99309 * 4 2 1 6 6 C 1.37878 * 120.00127 * 60.00227 * 4 2 1 7 7 N 1.31513 * 119.99818 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46905 * 59.99642 * 8 6 4 10 10 H 1.48494 * 109.47259 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47039 * 299.99518 * 8 6 4 12 12 N 1.46494 * 109.47632 * 120.00645 * 2 1 3 13 13 C 1.46499 * 120.00177 * 59.99838 * 12 2 1 14 14 C 1.34781 * 119.99784 * 239.99694 * 12 2 1 15 15 O 1.21273 * 120.00404 * 354.49809 * 14 12 2 16 16 C 1.50702 * 119.99580 * 174.49453 * 14 12 2 17 17 C 1.53008 * 115.54914 * 76.90437 * 16 14 12 18 18 C 1.52998 * 117.50016 * 222.60882 * 16 14 12 19 19 C 1.52997 * 117.50129 * 291.23457 * 16 14 12 20 20 H 1.08999 * 117.50362 * 145.02205 * 19 16 14 21 21 C 1.53002 * 117.50076 * 359.97438 * 19 16 14 22 22 H 1.09000 * 109.46602 * 299.99094 * 1 2 3 23 23 H 1.08991 * 109.47741 * 59.99240 * 1 2 3 24 24 H 1.08997 * 109.47248 * 179.97438 * 1 2 3 25 25 H 0.97006 * 119.99589 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46995 * 94.87557 * 13 12 2 27 27 H 1.08995 * 109.47115 * 214.87782 * 13 12 2 28 28 H 1.09000 * 109.46705 * 334.87674 * 13 12 2 29 29 H 1.08998 * 109.47065 * 55.41579 * 17 16 14 30 30 H 1.09002 * 109.46923 * 175.42351 * 17 16 14 31 31 H 1.08995 * 109.46768 * 295.42216 * 17 16 14 32 32 H 1.08996 * 117.50084 * 214.98275 * 18 16 14 33 33 H 1.09003 * 117.49773 * 359.97438 * 18 16 14 34 34 H 1.08998 * 109.47159 * 59.99831 * 21 19 16 35 35 H 1.08993 * 109.47067 * 180.02562 * 21 19 16 36 36 H 1.08999 * 109.47044 * 300.00462 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1317 6 6 1.6991 -0.2390 -2.4828 7 7 0.9427 0.8300 -2.6033 8 14 2.3223 -1.1190 -4.0082 9 1 1.8278 -2.5193 -4.0085 10 1 1.8267 -0.4193 -5.2205 11 1 3.8072 -1.1184 -4.0081 12 7 2.0184 -0.6907 1.1960 13 6 1.6646 -2.0933 1.4278 14 6 2.7934 -0.0357 2.0831 15 8 3.1688 1.0923 1.8437 16 6 3.1933 -0.7052 3.3727 17 6 4.3082 -1.7467 3.2575 18 6 3.1395 0.1342 4.6507 19 6 2.0953 -0.9573 4.4079 20 1 2.1673 -1.8650 5.0072 21 6 0.6753 -0.5100 4.0550 22 1 -0.3632 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7081 1.1613 -3.4843 26 1 2.4587 -2.7359 1.0475 27 1 1.5392 -2.2645 2.4969 28 1 0.7326 -2.3229 0.9112 29 1 5.1822 -1.2932 2.7900 30 1 4.5734 -2.1066 4.2516 31 1 3.9631 -2.5824 2.6486 32 1 3.8986 -0.0553 5.4097 33 1 2.8154 1.1709 4.5588 34 1 0.3453 -1.0262 3.1535 35 1 0.0033 -0.7507 4.8786 36 1 0.6660 0.5661 3.8814 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704356417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:20 Heat of formation + Delta-G solvation = -16.490277 kcal Electronic energy + Delta-G solvation = -16544.719126 eV Core-core repulsion = 14029.746326 eV Total energy + Delta-G solvation = -2514.972800 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84650 -36.77936 -35.23547 -32.71783 -30.09922 -29.30518 -26.96056 -25.95574 -25.19510 -23.21305 -20.90286 -19.98162 -17.70218 -16.43489 -15.80779 -15.35881 -15.15614 -14.43072 -14.25996 -13.30062 -12.98978 -12.76421 -12.55983 -12.27445 -12.07134 -11.94702 -11.83608 -11.50641 -11.29736 -11.18823 -11.03196 -10.79644 -10.69159 -10.24252 -10.15491 -9.89413 -9.57206 -9.13783 -8.77280 -8.39281 -7.51507 -6.04256 -4.11888 3.29479 3.34372 3.35243 3.41469 3.75439 4.07089 4.42577 4.75508 4.94951 5.06271 5.25775 5.30143 5.40945 5.73166 5.81952 5.88954 5.89708 5.97121 5.99583 6.07816 6.12759 6.21502 6.30884 6.40505 6.51129 6.78541 6.84857 7.08226 7.50065 7.56071 7.75207 8.04932 8.23918 8.60300 8.87560 9.14284 9.54657 11.00985 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.008174 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.930471 B = 3424.567032 C = 3602.540026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.061 0.939 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.586 5.586 13 C 0.084 3.916 14 C 0.542 3.458 15 O -0.552 6.552 16 C -0.151 4.151 17 C -0.107 4.107 18 C -0.148 4.148 19 C -0.138 4.138 20 H 0.107 0.893 21 C -0.133 4.133 22 H 0.011 0.989 23 H 0.093 0.907 24 H 0.030 0.970 25 H 0.263 0.737 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -6.497 11.953 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.079 0.921 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.316 5.316 13 C -0.060 4.060 14 C 0.328 3.672 15 O -0.430 6.430 16 C -0.154 4.154 17 C -0.164 4.164 18 C -0.185 4.185 19 C -0.156 4.156 20 H 0.125 0.875 21 C -0.190 4.190 22 H 0.030 0.970 23 H 0.112 0.888 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.619 -5.781 11.634 13.006 hybrid contribution 0.351 -0.596 -0.931 1.160 sum 0.971 -6.377 10.703 12.497 Atomic orbital electron populations 1.22096 0.98240 0.99330 1.00790 1.18927 0.90744 0.94458 0.80134 0.92083 1.21292 1.31684 1.12895 0.90326 0.92385 1.24895 0.95004 0.94996 0.98938 1.69871 1.36434 1.22650 1.23794 0.86559 0.79246 0.79549 0.82043 1.20277 1.21183 1.20281 1.48120 1.48690 1.11515 1.23266 1.21680 1.01039 0.83192 1.00119 1.19295 0.78585 0.85705 0.83648 1.90635 1.55135 1.19553 1.77726 1.21603 1.00747 1.02331 0.90734 1.21243 0.96437 0.96928 1.01837 1.23127 1.01245 0.97050 0.97074 1.22459 0.91579 1.00385 1.01187 0.87511 1.21554 0.93707 1.01880 1.01852 0.97024 0.88828 0.95108 0.92680 0.93751 0.92132 0.90967 0.91832 0.92137 0.91608 0.88533 0.88304 0.90939 0.92259 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.96 37.16 0.33 -3.17 16 2 C 0.26 6.68 2.62 -69.08 -0.18 6.50 16 3 H 0.06 1.85 6.91 -51.93 -0.36 1.49 16 4 C -0.52 -14.39 8.37 -34.44 -0.29 -14.68 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.59 -12.71 2.47 -175.26 -0.43 -13.15 16 13 C 0.08 1.45 7.54 59.85 0.45 1.90 16 14 C 0.54 11.68 5.93 -10.98 -0.07 11.61 16 15 O -0.55 -14.37 16.30 5.56 0.09 -14.28 16 16 C -0.15 -2.42 1.41 -155.66 -0.22 -2.63 16 17 C -0.11 -1.45 9.60 37.16 0.36 -1.09 16 18 C -0.15 -2.06 9.46 -26.73 -0.25 -2.32 16 19 C -0.14 -1.80 4.97 -90.62 -0.45 -2.25 16 20 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 21 C -0.13 -1.82 8.97 37.16 0.33 -1.49 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 24 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.04 0.75 7.65 -51.93 -0.40 0.35 16 27 H 0.06 0.87 4.57 -51.93 -0.24 0.63 16 28 H 0.07 1.26 6.44 -51.93 -0.33 0.93 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.22 16 31 H 0.06 0.86 6.85 -51.93 -0.36 0.50 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.10 1.53 8.05 -51.93 -0.42 1.11 16 34 H 0.07 1.07 5.51 -51.93 -0.29 0.79 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 LS Contribution 285.44 15.07 4.30 4.30 Total: -1.00 -31.14 285.44 -6.04 -37.19 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.53 Total: 0.39 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.08 Total: -5.94 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.19 Total: -37.98 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.09 Total: -14.28 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.14 -6.04 -37.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704356417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.696 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds