Wall clock time and date at job start Mon Mar 30 2020 03:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47048 * 2 1 4 4 C 1.50703 * 109.46720 * 240.00746 * 2 1 3 5 5 H 1.08001 * 120.00131 * 239.99309 * 4 2 1 6 6 C 1.37878 * 120.00127 * 60.00227 * 4 2 1 7 7 N 1.31513 * 119.99818 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46905 * 59.99642 * 8 6 4 10 10 H 1.48494 * 109.47259 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47039 * 299.99518 * 8 6 4 12 12 N 1.46494 * 109.47632 * 120.00645 * 2 1 3 13 13 C 1.46499 * 120.00177 * 59.99838 * 12 2 1 14 14 C 1.34781 * 119.99784 * 239.99694 * 12 2 1 15 15 O 1.21273 * 120.00404 * 354.49809 * 14 12 2 16 16 C 1.50702 * 119.99580 * 174.49453 * 14 12 2 17 17 C 1.53008 * 115.54914 * 76.90437 * 16 14 12 18 18 C 1.52998 * 117.50016 * 222.60882 * 16 14 12 19 19 C 1.52997 * 117.50129 * 291.23457 * 16 14 12 20 20 H 1.08999 * 117.50362 * 145.02205 * 19 16 14 21 21 C 1.53002 * 117.50076 * 359.97438 * 19 16 14 22 22 H 1.09000 * 109.46602 * 299.99094 * 1 2 3 23 23 H 1.08991 * 109.47741 * 59.99240 * 1 2 3 24 24 H 1.08997 * 109.47248 * 179.97438 * 1 2 3 25 25 H 0.97006 * 119.99589 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46995 * 94.87557 * 13 12 2 27 27 H 1.08995 * 109.47115 * 214.87782 * 13 12 2 28 28 H 1.09000 * 109.46705 * 334.87674 * 13 12 2 29 29 H 1.08998 * 109.47065 * 55.41579 * 17 16 14 30 30 H 1.09002 * 109.46923 * 175.42351 * 17 16 14 31 31 H 1.08995 * 109.46768 * 295.42216 * 17 16 14 32 32 H 1.08996 * 117.50084 * 214.98275 * 18 16 14 33 33 H 1.09003 * 117.49773 * 359.97438 * 18 16 14 34 34 H 1.08998 * 109.47159 * 59.99831 * 21 19 16 35 35 H 1.08993 * 109.47067 * 180.02562 * 21 19 16 36 36 H 1.08999 * 109.47044 * 300.00462 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1317 6 6 1.6991 -0.2390 -2.4828 7 7 0.9427 0.8300 -2.6033 8 14 2.3223 -1.1190 -4.0082 9 1 1.8278 -2.5193 -4.0085 10 1 1.8267 -0.4193 -5.2205 11 1 3.8072 -1.1184 -4.0081 12 7 2.0184 -0.6907 1.1960 13 6 1.6646 -2.0933 1.4278 14 6 2.7934 -0.0357 2.0831 15 8 3.1688 1.0923 1.8437 16 6 3.1933 -0.7052 3.3727 17 6 4.3082 -1.7467 3.2575 18 6 3.1395 0.1342 4.6507 19 6 2.0953 -0.9573 4.4079 20 1 2.1673 -1.8650 5.0072 21 6 0.6753 -0.5100 4.0550 22 1 -0.3632 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7081 1.1613 -3.4843 26 1 2.4587 -2.7359 1.0475 27 1 1.5392 -2.2645 2.4969 28 1 0.7326 -2.3229 0.9112 29 1 5.1822 -1.2932 2.7900 30 1 4.5734 -2.1066 4.2516 31 1 3.9631 -2.5824 2.6486 32 1 3.8986 -0.0553 5.4097 33 1 2.8154 1.1709 4.5588 34 1 0.3453 -1.0262 3.1535 35 1 0.0033 -0.7507 4.8786 36 1 0.6660 0.5661 3.8814 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704356417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:20 Heat of formation + Delta-G solvation = -35.999180 kcal Electronic energy + Delta-G solvation = -16545.565095 eV Core-core repulsion = 14029.746326 eV Total energy + Delta-G solvation = -2515.818770 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34822 -38.22127 -37.10031 -34.71733 -31.52043 -30.92826 -28.16022 -27.40201 -27.30749 -24.83797 -22.03235 -21.70547 -19.30313 -18.46009 -17.52926 -16.96549 -16.51828 -16.22800 -15.66093 -14.95782 -14.51029 -14.17976 -14.05768 -13.79544 -13.40124 -13.27265 -13.16453 -13.02652 -12.92599 -12.76769 -12.69854 -12.56839 -12.28767 -12.18698 -12.14153 -11.21688 -11.06499 -10.75800 -10.57858 -10.33201 -9.31687 -8.15654 -6.32630 1.39386 1.42215 1.49613 1.78650 2.28446 2.45840 2.75044 3.11652 3.60773 3.76051 3.85123 4.11154 4.40873 4.46481 4.64285 4.68592 4.77196 4.82165 4.86094 4.88047 4.89851 4.96048 4.97481 5.03371 5.06262 5.19135 5.29959 5.42989 5.44997 5.63159 5.67695 6.03389 6.15563 6.75107 6.85883 7.31584 7.50025 8.88396 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.008174 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.930471 B = 3424.567032 C = 3602.540026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.261 3.739 3 H 0.002 0.998 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.261 1.261 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.530 3.470 15 O -0.614 6.614 16 C -0.172 4.172 17 C -0.101 4.101 18 C -0.146 4.146 19 C -0.110 4.110 20 H 0.152 0.848 21 C -0.137 4.137 22 H 0.020 0.980 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.265 0.735 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 -9.424 13.590 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.159 3.841 3 H 0.020 0.980 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.185 1.185 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.319 5.319 13 C -0.060 4.060 14 C 0.319 3.681 15 O -0.497 6.497 16 C -0.175 4.175 17 C -0.159 4.159 18 C -0.184 4.184 19 C -0.128 4.128 20 H 0.170 0.830 21 C -0.194 4.194 22 H 0.039 0.961 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.731 -8.753 13.294 15.934 hybrid contribution 0.296 0.388 -1.412 1.494 sum 1.027 -8.366 11.882 14.568 Atomic orbital electron populations 1.21855 0.96859 1.00183 0.99903 1.18530 0.91733 0.91922 0.81966 0.97991 1.21546 1.31917 1.13013 0.91242 0.92326 1.25761 0.95082 0.95663 1.02072 1.70020 1.37300 1.23899 1.24495 0.85504 0.78325 0.79068 0.78090 1.18532 1.20760 1.20429 1.48110 1.48549 1.13168 1.22033 1.21906 1.01087 0.80405 1.02557 1.20373 0.77324 0.85118 0.85263 1.90591 1.57305 1.22469 1.79307 1.21559 1.03698 1.04054 0.88198 1.21267 0.94520 0.95891 1.04175 1.23241 1.02634 0.96022 0.96468 1.22676 0.89947 1.01358 0.98769 0.83034 1.21604 0.95267 0.99806 1.02730 0.96128 0.91435 0.93176 0.92618 0.92964 0.88519 0.91145 0.93820 0.88084 0.91153 0.85071 0.90973 0.92012 0.88938 0.95494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 8.96 71.98 0.64 -5.72 16 2 C 0.26 14.08 2.62 44.25 0.12 14.19 16 3 H 0.00 0.14 6.91 -2.38 -0.02 0.12 16 4 C -0.54 -30.22 8.37 25.60 0.21 -30.01 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16 8 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 9 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 N -0.59 -25.92 2.47 -826.80 -2.05 -27.97 16 13 C 0.08 2.71 7.54 127.77 0.96 3.68 16 14 C 0.53 23.39 5.93 87.66 0.52 23.91 16 15 O -0.61 -34.00 16.30 -3.01 -0.05 -34.05 16 16 C -0.17 -5.18 1.41 -52.93 -0.07 -5.26 16 17 C -0.10 -2.42 9.60 71.98 0.69 -1.73 16 18 C -0.15 -3.76 9.46 30.59 0.29 -3.47 16 19 C -0.11 -2.43 4.97 -10.79 -0.05 -2.49 16 20 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 21 C -0.14 -3.44 8.97 71.98 0.65 -2.79 16 22 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 24 H 0.05 2.21 6.66 -2.39 -0.02 2.20 16 25 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 26 H 0.05 1.64 7.65 -2.38 -0.02 1.62 16 27 H 0.10 2.45 4.57 -2.39 -0.01 2.44 16 28 H 0.07 2.33 6.44 -2.39 -0.02 2.32 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.61 8.10 -2.39 -0.02 1.59 16 31 H 0.07 1.59 6.85 -2.39 -0.02 1.58 16 32 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 34 H 0.06 1.69 5.51 -2.39 -0.01 1.68 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.03 0.82 7.90 -2.39 -0.02 0.80 16 Total: -1.00 -72.57 285.44 5.63 -66.94 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.05 Total: 11.50 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 4.40 Total: -8.47 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -1.80 Total: -81.87 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.05 Total: -34.05 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -72.57 5.63 -66.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704356417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.936 kcal (2) G-P(sol) polarization free energy of solvation -72.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds