Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47336 * 2 1 4 4 H 1.08998 * 109.46931 * 304.99688 * 3 2 1 5 5 C 1.50702 * 109.46758 * 184.99754 * 3 2 1 6 6 H 1.08000 * 120.00002 * 239.99154 * 5 3 2 7 7 C 1.37879 * 119.99841 * 60.00010 * 5 3 2 8 8 N 1.31511 * 120.00016 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99727 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47014 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46910 * 120.00233 * 9 7 5 12 12 H 1.48508 * 109.46984 * 239.99861 * 9 7 5 13 13 N 1.46496 * 109.47464 * 64.99986 * 3 2 1 14 14 C 1.34780 * 119.99685 * 274.99987 * 13 3 2 15 15 O 1.21277 * 120.00032 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99945 * 180.02562 * 14 13 3 17 17 C 1.52999 * 115.55929 * 34.29299 * 16 14 13 18 18 C 1.53002 * 117.49668 * 248.60941 * 16 14 13 19 19 C 1.53000 * 60.02940 * 252.51929 * 18 16 14 20 20 H 1.09008 * 117.49673 * 107.47884 * 19 18 16 21 21 C 1.52996 * 117.49997 * 252.49592 * 19 18 16 22 22 H 1.08995 * 109.47499 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46965 * 300.00687 * 1 2 3 24 24 H 1.09001 * 109.47072 * 60.00041 * 1 2 3 25 25 H 1.09000 * 109.46965 * 239.99313 * 2 1 3 26 26 H 1.09004 * 109.46545 * 119.99440 * 2 1 3 27 27 H 0.97007 * 119.99920 * 179.97438 * 8 7 5 28 28 H 0.96998 * 120.00515 * 94.99968 * 13 3 2 29 29 H 1.08994 * 109.47641 * 325.70759 * 17 16 14 30 30 H 1.09000 * 109.46660 * 85.71044 * 17 16 14 31 31 H 1.08997 * 109.47098 * 205.70224 * 17 16 14 32 32 H 1.09002 * 117.49918 * 145.01964 * 18 16 14 33 33 H 1.09002 * 117.49754 * 0.02562 * 18 16 14 34 34 H 1.08999 * 109.46945 * 8.61614 * 21 19 18 35 35 H 1.09006 * 109.47222 * 128.60938 * 21 19 18 36 36 H 1.09002 * 109.47499 * 248.60870 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8781 -1.2279 8 7 3.4062 0.3364 -2.1728 9 14 6.0051 0.8808 -1.3816 10 1 6.5988 1.5469 -0.1946 11 1 6.4970 -0.5180 -1.4628 12 1 6.3992 1.6162 -2.6102 13 7 1.6526 2.0975 1.2517 14 6 0.4353 2.6645 1.3668 15 8 -0.3391 2.6328 0.4340 16 6 0.0368 3.3389 2.6543 17 6 1.1658 4.0476 3.4052 18 6 -1.0593 2.6746 3.4899 19 6 -1.3589 3.9637 2.7222 20 1 -1.9884 3.8868 1.8356 21 6 -1.5189 5.2495 3.5359 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8293 -0.0615 -2.9498 28 1 2.2720 2.1232 1.9977 29 1 2.0955 3.4950 3.2694 30 1 1.2835 5.0583 3.0145 31 1 0.9228 4.0945 4.4667 32 1 -0.9761 2.7425 4.5746 33 1 -1.4919 1.7496 3.1086 34 1 -1.2369 5.0614 4.5718 35 1 -0.8761 6.0253 3.1196 36 1 -2.5574 5.5781 3.4958 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704357868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = -50.937171 kcal Electronic energy + Delta-G solvation = -16143.142918 eV Core-core repulsion = 13626.676388 eV Total energy + Delta-G solvation = -2516.466530 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18309 -38.45546 -36.73466 -34.33558 -32.90052 -30.36349 -28.83820 -28.65397 -25.30453 -23.99609 -22.05293 -21.31716 -20.19034 -18.60675 -17.60191 -17.26231 -16.33437 -16.19438 -15.32302 -14.91068 -14.59471 -14.44059 -14.10510 -13.69202 -13.55848 -13.31590 -13.19680 -13.03390 -12.86086 -12.70749 -12.67515 -12.19223 -12.14679 -12.06843 -11.62723 -11.13073 -11.04578 -10.66677 -10.59292 -10.42290 -9.62144 -8.17442 -6.35158 1.43221 1.44112 1.56275 1.73148 2.35004 2.61535 2.90659 3.11943 3.72367 3.83148 3.93728 4.13556 4.44900 4.45196 4.53376 4.69200 4.75868 4.82460 4.85070 4.95683 5.03115 5.04639 5.05634 5.21250 5.23980 5.32135 5.41219 5.49708 5.54330 5.62989 5.77443 5.92459 6.15386 6.73419 7.01640 7.32484 7.60726 8.88336 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038970 B = 0.007247 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.324450 B = 3862.780711 C = 4302.030403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.701 5.701 14 C 0.528 3.472 15 O -0.594 6.594 16 C -0.175 4.175 17 C -0.106 4.106 18 C -0.133 4.133 19 C -0.124 4.124 20 H 0.085 0.915 21 C -0.113 4.113 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.023 0.977 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.265 0.735 28 H 0.401 0.599 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 5.706 13.946 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.210 1.210 13 N -0.350 5.350 14 C 0.315 3.685 15 O -0.476 6.476 16 C -0.178 4.178 17 C -0.163 4.163 18 C -0.170 4.170 19 C -0.143 4.143 20 H 0.103 0.897 21 C -0.169 4.169 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.237 0.763 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.154 0.846 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.943 5.582 13.107 15.080 hybrid contribution 1.063 -0.323 -0.703 1.315 sum -3.880 5.259 12.405 14.021 Atomic orbital electron populations 1.21669 0.97095 0.99110 1.00105 1.21779 0.93673 0.99200 1.01274 1.18380 0.93754 0.89163 0.81400 0.98734 1.21603 0.91334 1.38875 1.06731 0.91092 1.25799 1.03476 0.94314 0.94959 1.70061 1.37082 1.38427 1.09911 0.85301 0.78929 0.77892 0.78233 1.18381 1.20329 1.20992 1.46236 1.15595 1.55788 1.17342 1.20216 0.81589 0.77869 0.88780 1.90621 1.52843 1.61892 1.42281 1.21679 0.93975 1.06155 0.95985 1.21328 0.95030 0.99621 1.00361 1.23288 0.98097 0.96270 0.99334 1.22457 0.94707 0.95911 1.01249 0.89701 1.21356 1.02577 0.93672 0.99339 0.93448 0.93914 0.95757 0.90959 0.94060 0.92578 0.76293 0.92178 0.91760 0.88730 0.84565 0.90180 0.90262 0.92117 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.52 71.98 0.61 -5.12 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.63 2.24 44.25 0.10 14.73 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 5 C -0.55 -29.49 8.73 25.60 0.22 -29.27 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.79 5.29 84.66 0.45 1.23 16 8 N -0.92 -53.22 11.29 21.45 0.24 -52.97 16 9 Si 0.97 42.42 29.54 68.60 2.03 44.44 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.70 -30.21 4.92 -446.10 -2.19 -32.40 16 14 C 0.53 21.93 5.96 87.66 0.52 22.45 16 15 O -0.59 -29.76 13.40 -3.02 -0.04 -29.80 16 16 C -0.17 -5.12 2.62 -52.90 -0.14 -5.26 16 17 C -0.11 -2.37 8.82 71.98 0.64 -1.73 16 18 C -0.13 -3.17 9.52 30.60 0.29 -2.88 16 19 C -0.12 -3.24 5.92 -10.77 -0.06 -3.30 16 20 H 0.08 2.71 7.67 -2.38 -0.02 2.69 16 21 C -0.11 -2.00 9.22 71.98 0.66 -1.33 16 22 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.04 1.93 5.65 -2.39 -0.01 1.92 16 24 H 0.02 1.22 7.85 -2.39 -0.02 1.20 16 25 H 0.07 4.08 5.95 -2.39 -0.01 4.07 16 26 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 28 H 0.40 14.89 6.84 -92.71 -0.63 14.26 16 29 H 0.06 1.39 6.38 -2.39 -0.02 1.37 16 30 H 0.06 1.41 8.02 -2.39 -0.02 1.39 16 31 H 0.09 1.47 7.78 -2.39 -0.02 1.46 16 32 H 0.14 2.23 7.96 -2.39 -0.02 2.22 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 1.06 7.78 -2.39 -0.02 1.04 16 35 H 0.06 1.10 8.02 -2.38 -0.02 1.08 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -67.09 288.84 3.92 -63.17 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.42 Total: 23.97 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 3.46 Total: -16.41 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -1.95 Total: -85.37 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.04 Total: -29.80 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -67.09 3.92 -63.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704357868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.237 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds