Wall clock time and date at job start Mon Mar 30 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47394 * 2 1 4 4 H 1.09003 * 109.47522 * 305.38358 * 3 2 1 5 5 C 1.50700 * 109.47300 * 185.37538 * 3 2 1 6 6 H 1.07996 * 120.00100 * 244.79944 * 5 3 2 7 7 C 1.37874 * 119.99604 * 64.80368 * 5 3 2 8 8 N 1.31512 * 120.00139 * 7.04508 * 7 5 3 9 9 Si 1.86799 * 119.99946 * 187.04276 * 7 5 3 10 10 H 1.48501 * 109.47437 * 84.98997 * 9 7 5 11 11 H 1.48496 * 109.47542 * 204.99604 * 9 7 5 12 12 H 1.48509 * 109.47222 * 324.99296 * 9 7 5 13 13 N 1.46504 * 109.46943 * 65.37646 * 3 2 1 14 14 C 1.34775 * 120.00035 * 275.00333 * 13 3 2 15 15 O 1.21276 * 120.00084 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00014 * 180.02562 * 14 13 3 17 17 C 1.53006 * 115.54776 * 325.57933 * 16 14 13 18 18 C 1.53000 * 117.50196 * 111.24974 * 16 14 13 19 19 C 1.52997 * 117.49929 * 179.91011 * 16 14 13 20 20 H 1.09000 * 117.50057 * 0.02562 * 19 16 14 21 21 C 1.52998 * 117.49738 * 145.01787 * 19 16 14 22 22 H 1.08998 * 109.47255 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47170 * 299.99560 * 1 2 3 24 24 H 1.09001 * 109.47443 * 59.99454 * 1 2 3 25 25 H 1.08998 * 109.46938 * 120.00517 * 2 1 3 26 26 H 1.09011 * 109.46879 * 240.00277 * 2 1 3 27 27 H 0.97003 * 119.99430 * 179.97438 * 8 7 5 28 28 H 0.96999 * 119.99757 * 95.00079 * 13 3 2 29 29 H 1.08996 * 109.47181 * 34.41922 * 17 16 14 30 30 H 1.08995 * 109.46736 * 154.41919 * 17 16 14 31 31 H 1.09000 * 109.47020 * 274.41845 * 17 16 14 32 32 H 1.09003 * 117.50088 * 214.98354 * 18 16 14 33 33 H 1.09004 * 117.49650 * 359.97438 * 18 16 14 34 34 H 1.08999 * 109.47086 * 60.00183 * 21 19 16 35 35 H 1.09007 * 109.47459 * 179.97438 * 21 19 16 36 36 H 1.08995 * 109.47542 * 300.00193 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6001 1.9834 -0.8378 5 6 3.5411 1.4445 -0.1331 6 1 4.1543 1.8168 0.6742 7 6 4.1316 0.9711 -1.2856 8 7 3.3875 0.6476 -2.3206 9 14 5.9884 0.7891 -1.3768 10 1 6.3862 -0.5220 -0.8040 11 1 6.4240 0.8624 -2.7946 12 1 6.6316 1.8823 -0.6043 13 7 1.6602 2.0946 1.2557 14 6 0.4437 2.6613 1.3796 15 8 -0.3365 2.6316 0.4516 16 6 0.0532 3.3327 2.6711 17 6 0.6111 2.6913 3.9432 18 6 -0.1026 4.8547 2.6571 19 6 -1.3405 3.9590 2.7484 20 1 -1.9753 3.8851 1.8654 21 6 -2.0695 3.8964 4.0921 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.8031 0.3149 -3.1315 28 1 2.2843 2.1186 1.9978 29 1 1.6046 2.2903 3.7424 30 1 0.6747 3.4421 4.7308 31 1 -0.0485 1.8845 4.2627 32 1 0.1921 5.3990 3.5544 33 1 0.0778 5.3704 1.7139 34 1 -1.4796 4.4121 4.8499 35 1 -3.0431 4.3782 4.0002 36 1 -2.2052 2.8551 4.3838 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704357871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:02 Heat of formation + Delta-G solvation = -33.610557 kcal Electronic energy + Delta-G solvation = -16131.851338 eV Core-core repulsion = 13616.136147 eV Total energy + Delta-G solvation = -2515.715191 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67719 -37.04173 -34.84461 -32.36907 -31.07856 -29.23663 -27.76089 -26.85992 -23.45217 -22.37045 -20.76855 -19.52805 -18.63880 -17.05307 -15.83585 -15.39680 -14.60664 -14.50350 -13.88025 -13.55068 -13.43227 -12.81938 -12.64935 -12.40509 -12.25471 -11.88729 -11.65475 -11.44670 -11.29669 -11.14764 -10.99467 -10.76765 -10.32462 -10.19906 -9.95227 -9.66527 -9.56172 -9.05585 -8.82770 -8.46983 -7.77488 -6.12351 -4.18690 3.22239 3.25932 3.32473 3.33969 4.01150 4.17618 4.39005 4.83582 4.89289 5.10313 5.20734 5.39341 5.41417 5.70291 5.71369 5.83165 5.92878 5.95576 5.99217 6.12652 6.32343 6.38325 6.44042 6.47920 6.64473 7.03398 7.20540 7.36915 7.48440 7.64544 7.75286 7.88956 8.11769 8.74605 8.82451 9.21802 9.48251 10.95585 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040068 B = 0.007103 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.650319 B = 3941.278984 C = 4243.986766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.536 3.464 15 O -0.550 6.550 16 C -0.160 4.160 17 C -0.111 4.111 18 C -0.150 4.150 19 C -0.125 4.125 20 H 0.114 0.886 21 C -0.119 4.119 22 H 0.022 0.978 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.264 0.736 28 H 0.387 0.613 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 4.255 11.680 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.321 3.679 15 O -0.429 6.429 16 C -0.163 4.163 17 C -0.168 4.168 18 C -0.188 4.188 19 C -0.144 4.144 20 H 0.133 0.867 21 C -0.176 4.176 22 H 0.041 0.959 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.814 4.136 10.785 12.931 hybrid contribution 1.409 -0.193 0.186 1.435 sum -4.404 3.943 10.971 12.463 Atomic orbital electron populations 1.21841 0.98095 0.98074 1.01534 1.21848 0.92931 0.99898 1.01242 1.18786 0.94361 0.88993 0.81186 0.92834 1.21195 0.90684 1.43399 1.02126 0.92155 1.24888 0.98449 0.95120 0.95095 1.69973 1.35383 1.43167 1.03284 0.86519 0.85059 0.78613 0.77248 1.20440 1.21157 1.19926 1.46437 1.14409 1.55886 1.18405 1.19274 0.82652 0.78735 0.87255 1.90647 1.51377 1.60164 1.40741 1.21705 1.02237 0.96405 0.95989 1.21300 1.00928 1.00358 0.94262 1.23167 1.01680 0.90593 1.03342 1.22375 0.89665 1.02327 1.00001 0.86748 1.21346 0.99726 1.01820 0.94711 0.95855 0.93944 0.93068 0.94836 0.89969 0.92577 0.77951 0.91725 0.92095 0.91940 0.88384 0.88518 0.92624 0.92186 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.52 37.16 0.32 -2.82 16 2 C -0.12 -2.94 5.49 -26.74 -0.15 -3.09 16 3 C 0.27 6.86 2.11 -69.08 -0.15 6.71 16 4 H 0.05 1.60 7.55 -51.93 -0.39 1.21 16 5 C -0.54 -14.30 8.67 -34.44 -0.30 -14.60 16 6 H 0.06 1.54 7.73 -52.49 -0.41 1.14 16 7 C 0.07 1.85 5.19 -17.82 -0.09 1.75 16 8 N -0.88 -25.13 12.00 55.43 0.66 -24.46 16 9 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -14.95 4.92 -54.93 -0.27 -15.22 16 14 C 0.54 10.95 5.98 -10.99 -0.07 10.89 16 15 O -0.55 -13.17 13.40 5.56 0.07 -13.09 16 16 C -0.16 -2.46 2.61 -155.66 -0.41 -2.87 16 17 C -0.11 -1.38 8.82 37.16 0.33 -1.05 16 18 C -0.15 -2.02 9.53 -26.69 -0.25 -2.28 16 19 C -0.13 -1.72 5.92 -90.59 -0.54 -2.26 16 20 H 0.11 1.80 7.67 -51.93 -0.40 1.40 16 21 C -0.12 -1.24 9.21 37.16 0.34 -0.90 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.04 0.94 5.64 -51.93 -0.29 0.65 16 24 H 0.05 1.24 7.87 -51.93 -0.41 0.83 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 2.20 6.64 -51.92 -0.34 1.86 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.39 7.27 6.83 -40.82 -0.28 6.99 16 29 H 0.06 0.81 6.39 -51.93 -0.33 0.47 16 30 H 0.06 0.62 7.77 -51.93 -0.40 0.22 16 31 H 0.06 0.74 8.02 -51.93 -0.42 0.33 16 32 H 0.10 1.07 7.96 -51.93 -0.41 0.65 16 33 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.05 0.51 7.77 -51.93 -0.40 0.10 16 35 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -29.91 289.97 -6.87 -36.79 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.73 Total: 6.41 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.96 Total: -10.50 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.39 Total: -39.69 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.09 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.91 -6.87 -36.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704357871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.177 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds