Wall clock time and date at job start Mon Mar 30 2020 03:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.55935 * 2 1 4 4 C 1.52992 * 117.49995 * 145.69206 * 2 1 3 5 5 C 1.52997 * 117.49813 * 214.31701 * 2 1 3 6 6 C 1.53000 * 117.52238 * 145.02693 * 5 2 1 7 7 C 1.50706 * 117.50188 * 359.97438 * 5 2 1 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 5 2 9 9 N 1.34773 * 120.00081 * 179.71597 * 7 5 2 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 5 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47231 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47380 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99617 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00059 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00111 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47136 * 90.00568 * 17 15 13 19 19 H 1.48508 * 109.46834 * 210.00002 * 17 15 13 20 20 H 1.48491 * 109.47253 * 329.99715 * 17 15 13 21 21 H 1.09003 * 109.46642 * 205.68683 * 1 2 3 22 22 H 1.09002 * 109.47376 * 325.68615 * 1 2 3 23 23 H 1.09003 * 109.47234 * 85.68975 * 1 2 3 24 24 H 1.09006 * 117.50310 * 0.02562 * 4 2 1 25 25 H 1.09001 * 117.49774 * 214.97749 * 4 2 1 26 26 H 1.08997 * 109.46945 * 299.88251 * 6 5 2 27 27 H 1.09002 * 109.46817 * 59.87238 * 6 5 2 28 28 H 1.08996 * 109.47560 * 179.87623 * 6 5 2 29 29 H 0.96998 * 120.00525 * 359.97438 * 9 7 5 30 30 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 31 31 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 32 32 H 1.09004 * 109.47116 * 299.99365 * 11 10 9 33 33 H 1.08993 * 109.47352 * 59.99609 * 11 10 9 34 34 H 1.08999 * 109.47343 * 300.00090 * 12 11 10 35 35 H 1.09010 * 109.47369 * 59.99437 * 12 11 10 36 36 H 0.96995 * 120.00404 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2364 -1.1209 -0.7651 6 6 3.5491 -0.7764 -1.4716 7 6 1.3720 -2.1409 -1.4606 8 8 0.1638 -2.0540 -1.4002 9 7 1.9416 -3.1464 -2.1540 10 6 1.1012 -4.1376 -2.8305 11 6 1.9902 -5.1616 -3.5389 12 6 1.1127 -6.1971 -4.2449 13 6 1.9883 -7.2054 -4.9432 14 1 3.0632 -7.1163 -4.8892 15 6 1.4171 -8.2411 -5.6519 16 7 2.1813 -9.1207 -6.2617 17 14 -0.4422 -8.3947 -5.7458 18 1 -0.9422 -7.6421 -6.9243 19 1 -0.8145 -9.8262 -5.8784 20 1 -1.0480 -7.8381 -4.5096 21 1 -0.3633 -0.9262 0.4455 22 1 -0.3634 0.8488 0.5793 23 1 -0.3634 0.0772 -1.0248 24 1 1.6113 -1.8588 1.2678 25 1 3.1716 -0.8751 1.2682 26 1 3.3701 0.0053 -2.2098 27 1 4.2747 -0.4243 -0.7384 28 1 3.9376 -1.6646 -1.9698 29 1 2.9078 -3.2136 -2.2057 30 1 0.4756 -4.6453 -2.0963 31 1 0.4682 -3.6376 -3.5636 32 1 2.6155 -4.6537 -4.2732 33 1 2.6235 -5.6616 -2.8061 34 1 0.4876 -6.7050 -3.5105 35 1 0.4790 -5.6974 -4.9777 36 1 1.7795 -9.8495 -6.7599 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707721181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:08 Heat of formation + Delta-G solvation = -35.038993 kcal Electronic energy + Delta-G solvation = -15252.675872 eV Core-core repulsion = 12736.898739 eV Total energy + Delta-G solvation = -2515.777133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28928 -37.21353 -35.42318 -33.38125 -31.61621 -30.06401 -27.36558 -27.10045 -23.89532 -22.12520 -21.11142 -20.59788 -19.11784 -16.85898 -16.44197 -15.72669 -15.41048 -14.95060 -14.28799 -14.08219 -13.65416 -13.29433 -13.05562 -12.70610 -12.60338 -12.44427 -12.14884 -11.97128 -11.90382 -11.51663 -11.07678 -10.90015 -10.26891 -10.12068 -9.97921 -9.93390 -9.75464 -9.31083 -9.22551 -8.81935 -8.56130 -6.06925 -4.05685 2.57943 3.29065 3.30993 3.38486 3.42812 3.63905 4.36738 4.43946 4.61945 4.64323 4.82140 5.21089 5.27208 5.40166 5.46097 5.50806 5.54993 5.65771 5.65848 5.75541 5.89282 5.91263 6.01441 6.03091 6.33844 6.44231 6.47535 6.71357 6.79945 7.22075 7.35568 7.66882 7.76607 8.37792 8.49910 8.96850 9.55370 11.06358 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052510 B = 0.004696 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.108751 B = 5961.366611 C = 6343.900965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.116 4.116 3 H 0.109 0.891 4 C -0.150 4.150 5 C -0.166 4.166 6 C -0.114 4.114 7 C 0.544 3.456 8 O -0.540 6.540 9 N -0.723 5.723 10 C 0.114 3.886 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.522 4.522 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.399 0.601 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 17.457 12.247 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.135 4.135 3 H 0.127 0.873 4 C -0.187 4.187 5 C -0.170 4.170 6 C -0.171 4.171 7 C 0.330 3.670 8 O -0.417 6.417 9 N -0.374 5.374 10 C -0.008 4.008 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.560 4.560 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 H 0.083 0.917 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.234 0.766 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.443 17.324 12.158 21.169 hybrid contribution -0.335 -0.352 -0.272 0.556 sum 0.109 16.972 11.887 20.721 Atomic orbital electron populations 1.21364 0.91526 1.01302 1.02613 1.22433 0.96453 0.93384 1.01230 0.87335 1.23238 1.02950 1.01818 0.90693 1.21615 0.99048 1.01189 0.95104 1.21352 0.93443 1.02066 1.00287 1.19478 0.87884 0.81195 0.78474 1.90688 1.14461 1.74936 1.61665 1.46176 1.10736 1.27846 1.52609 1.21649 0.93950 0.89262 0.95976 1.21702 0.98501 0.95954 0.98970 1.19505 0.95799 0.94098 0.95503 1.21098 0.94735 1.09022 1.31172 0.91014 1.25024 0.98106 0.95430 0.94877 1.69908 1.35318 1.15054 1.33927 0.86777 0.86215 0.77204 0.79111 1.20227 1.21345 1.18922 0.91732 0.93470 0.91367 0.88337 0.87946 0.91617 0.91573 0.91717 0.76626 0.91852 0.91814 0.92134 0.92115 0.96317 0.96752 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 8.43 37.16 0.31 -0.97 16 2 C -0.12 -1.17 6.13 -90.62 -0.56 -1.72 16 3 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.15 -1.41 9.52 -26.74 -0.25 -1.66 16 5 C -0.17 -1.81 2.62 -155.66 -0.41 -2.22 16 6 C -0.11 -0.96 9.79 37.16 0.36 -0.60 16 7 C 0.54 7.94 7.37 -10.98 -0.08 7.86 16 8 O -0.54 -9.59 13.10 5.56 0.07 -9.52 16 9 N -0.72 -10.24 5.46 -60.29 -0.33 -10.57 16 10 C 0.11 1.93 5.67 -4.04 -0.02 1.90 16 11 C -0.11 -2.13 5.27 -26.74 -0.14 -2.28 16 12 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 13 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 17 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.26 -6.33 6.54 56.52 0.37 -5.97 16 21 H 0.06 0.85 7.01 -51.93 -0.36 0.48 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.91 7.26 -51.93 -0.38 0.53 16 24 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 25 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.44 7.90 -51.93 -0.41 0.03 16 28 H 0.06 0.52 6.37 -51.93 -0.33 0.19 16 29 H 0.40 4.69 6.76 -40.82 -0.28 4.42 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 35 H 0.01 0.33 7.57 -51.92 -0.39 -0.06 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -31.91 294.17 -6.95 -38.86 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.91 Total: -0.02 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.33 Total: -13.30 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.44 Total: -37.60 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.91 -6.95 -38.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707721181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.823 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds