Wall clock time and date at job start Mon Mar 30 2020 03:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.55935 * 2 1 4 4 C 1.52992 * 117.49995 * 145.69206 * 2 1 3 5 5 C 1.52997 * 117.49813 * 214.31701 * 2 1 3 6 6 C 1.53000 * 117.52238 * 145.02693 * 5 2 1 7 7 C 1.50706 * 117.50188 * 359.97438 * 5 2 1 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 5 2 9 9 N 1.34773 * 120.00081 * 179.71597 * 7 5 2 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 5 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47231 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47380 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99617 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00059 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00111 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47136 * 90.00568 * 17 15 13 19 19 H 1.48508 * 109.46834 * 210.00002 * 17 15 13 20 20 H 1.48491 * 109.47253 * 329.99715 * 17 15 13 21 21 H 1.09003 * 109.46642 * 205.68683 * 1 2 3 22 22 H 1.09002 * 109.47376 * 325.68615 * 1 2 3 23 23 H 1.09003 * 109.47234 * 85.68975 * 1 2 3 24 24 H 1.09006 * 117.50310 * 0.02562 * 4 2 1 25 25 H 1.09001 * 117.49774 * 214.97749 * 4 2 1 26 26 H 1.08997 * 109.46945 * 299.88251 * 6 5 2 27 27 H 1.09002 * 109.46817 * 59.87238 * 6 5 2 28 28 H 1.08996 * 109.47560 * 179.87623 * 6 5 2 29 29 H 0.96998 * 120.00525 * 359.97438 * 9 7 5 30 30 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 31 31 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 32 32 H 1.09004 * 109.47116 * 299.99365 * 11 10 9 33 33 H 1.08993 * 109.47352 * 59.99609 * 11 10 9 34 34 H 1.08999 * 109.47343 * 300.00090 * 12 11 10 35 35 H 1.09010 * 109.47369 * 59.99437 * 12 11 10 36 36 H 0.96995 * 120.00404 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2364 -1.1209 -0.7651 6 6 3.5491 -0.7764 -1.4716 7 6 1.3720 -2.1409 -1.4606 8 8 0.1638 -2.0540 -1.4002 9 7 1.9416 -3.1464 -2.1540 10 6 1.1012 -4.1376 -2.8305 11 6 1.9902 -5.1616 -3.5389 12 6 1.1127 -6.1971 -4.2449 13 6 1.9883 -7.2054 -4.9432 14 1 3.0632 -7.1163 -4.8892 15 6 1.4171 -8.2411 -5.6519 16 7 2.1813 -9.1207 -6.2617 17 14 -0.4422 -8.3947 -5.7458 18 1 -0.9422 -7.6421 -6.9243 19 1 -0.8145 -9.8262 -5.8784 20 1 -1.0480 -7.8381 -4.5096 21 1 -0.3633 -0.9262 0.4455 22 1 -0.3634 0.8488 0.5793 23 1 -0.3634 0.0772 -1.0248 24 1 1.6113 -1.8588 1.2678 25 1 3.1716 -0.8751 1.2682 26 1 3.3701 0.0053 -2.2098 27 1 4.2747 -0.4243 -0.7384 28 1 3.9376 -1.6646 -1.9698 29 1 2.9078 -3.2136 -2.2057 30 1 0.4756 -4.6453 -2.0963 31 1 0.4682 -3.6376 -3.5636 32 1 2.6155 -4.6537 -4.2732 33 1 2.6235 -5.6616 -2.8061 34 1 0.4876 -6.7050 -3.5105 35 1 0.4790 -5.6974 -4.9777 36 1 1.7795 -9.8495 -6.7599 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707721181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:07 Heat of formation + Delta-G solvation = -55.706776 kcal Electronic energy + Delta-G solvation = -15253.572094 eV Core-core repulsion = 12736.898739 eV Total energy + Delta-G solvation = -2516.673355 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.33138 -38.22668 -36.84829 -35.20463 -33.40757 -31.02348 -28.95806 -27.95544 -25.37029 -23.43598 -22.25472 -21.92610 -20.31311 -18.94916 -17.47982 -16.98106 -16.71023 -16.21890 -15.88817 -15.36305 -14.86677 -14.75273 -14.20312 -13.87192 -13.80222 -13.62946 -13.51944 -13.09576 -12.94852 -12.73984 -12.70394 -12.28023 -11.91244 -11.78445 -11.62093 -11.35146 -11.08891 -10.78503 -10.77491 -10.43947 -10.06355 -8.30629 -6.34665 1.35827 1.37426 1.49230 1.51350 2.18033 2.35235 2.80466 3.05092 3.58309 3.75186 3.87673 4.00012 4.08707 4.17302 4.46833 4.47371 4.69086 4.82980 4.84584 4.85800 4.88027 4.93995 4.98146 5.01195 5.03651 5.17889 5.28589 5.37616 5.47674 5.53052 5.57431 5.63719 6.26036 6.57480 6.73305 7.26119 7.30324 8.85850 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052510 B = 0.004696 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.108751 B = 5961.366611 C = 6343.900965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.118 4.118 3 H 0.136 0.864 4 C -0.136 4.136 5 C -0.176 4.176 6 C -0.111 4.111 7 C 0.536 3.464 8 O -0.578 6.578 9 N -0.716 5.716 10 C 0.127 3.873 11 C -0.100 4.100 12 C -0.012 4.012 13 C -0.532 4.532 14 H 0.038 0.962 15 C 0.006 3.994 16 N -0.950 5.950 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.249 1.249 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.134 0.866 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.412 0.588 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.314 19.147 13.423 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.136 4.136 3 H 0.154 0.846 4 C -0.174 4.174 5 C -0.179 4.179 6 C -0.168 4.168 7 C 0.324 3.676 8 O -0.458 6.458 9 N -0.368 5.368 10 C 0.003 3.997 11 C -0.138 4.138 12 C -0.050 4.050 13 C -0.570 4.570 14 H 0.056 0.944 15 C -0.191 4.191 16 N -0.590 5.590 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.173 1.173 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.152 0.848 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.249 0.751 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.460 19.032 13.346 23.249 hybrid contribution -0.274 -0.876 -0.624 1.110 sum 0.186 18.156 12.722 22.170 Atomic orbital electron populations 1.21286 0.93127 1.00984 1.01198 1.22572 0.95346 0.94653 1.01035 0.84589 1.23343 1.03823 1.00753 0.89450 1.21646 0.99691 1.00615 0.95971 1.21387 0.92415 1.02221 1.00784 1.20215 0.87929 0.81476 0.77974 1.90677 1.16331 1.75839 1.62927 1.46044 1.11215 1.27290 1.52288 1.21285 0.93571 0.89229 0.95575 1.21476 0.97999 0.95371 0.98931 1.19466 0.95782 0.94180 0.95562 1.21456 0.93960 1.10207 1.31344 0.94389 1.25967 1.03457 0.95094 0.94562 1.70050 1.37692 1.16046 1.35254 0.85704 0.79817 0.77488 0.79940 1.19196 1.20901 1.17304 0.94034 0.91372 0.93727 0.89737 0.84839 0.91507 0.89126 0.91651 0.75095 0.92667 0.92549 0.91700 0.91772 0.96160 0.96256 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 8.43 71.98 0.61 -1.82 16 2 C -0.12 -2.07 6.13 -10.80 -0.07 -2.14 16 3 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.14 -2.19 9.52 30.59 0.29 -1.90 16 5 C -0.18 -3.44 2.62 -52.93 -0.14 -3.58 16 6 C -0.11 -1.52 9.79 71.98 0.70 -0.81 16 7 C 0.54 15.18 7.37 87.66 0.65 15.83 16 8 O -0.58 -20.63 13.10 -3.04 -0.04 -20.67 16 9 N -0.72 -19.45 5.46 -463.05 -2.53 -21.97 16 10 C 0.13 4.18 5.67 86.38 0.49 4.67 16 11 C -0.10 -3.68 5.27 30.59 0.16 -3.52 16 12 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 13 C -0.53 -30.39 9.66 25.60 0.25 -30.14 16 14 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 15 C 0.01 0.36 5.47 84.66 0.46 0.82 16 16 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 17 Si 0.95 44.63 27.47 68.60 1.88 46.52 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 21 H 0.04 1.09 7.01 -2.39 -0.02 1.08 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.04 1.19 7.26 -2.39 -0.02 1.17 16 24 H 0.08 1.61 8.05 -2.38 -0.02 1.59 16 25 H 0.13 1.33 8.05 -2.39 -0.02 1.31 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 0.82 7.90 -2.39 -0.02 0.80 16 28 H 0.06 0.88 6.37 -2.39 -0.02 0.86 16 29 H 0.41 8.97 6.76 -92.71 -0.63 8.34 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 35 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -69.85 294.17 3.51 -66.34 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.37 Total: 11.99 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.53 Total: -23.01 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.23 Total: -81.16 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.67 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -69.85 3.51 -66.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707721181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.630 kcal (2) G-P(sol) polarization free energy of solvation -69.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds