Wall clock time and date at job start Mon Mar 30 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46784 * 2 1 4 4 H 1.09004 * 110.21513 * 307.91422 * 3 2 1 5 5 C 1.54479 * 110.24481 * 185.98572 * 3 2 1 6 6 H 1.08993 * 110.97016 * 148.20841 * 5 3 2 7 7 C 1.50704 * 111.00139 * 24.45806 * 5 3 2 8 8 H 1.07997 * 120.00098 * 279.91180 * 7 5 3 9 9 C 1.37874 * 119.99917 * 99.91296 * 7 5 3 10 10 N 1.31518 * 119.99851 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 120.00163 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47061 * 59.99922 * 11 9 7 13 13 H 1.48498 * 109.47005 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47444 * 300.00069 * 11 9 7 15 15 C 1.54631 * 101.76382 * 266.32884 * 5 3 2 16 16 C 1.51278 * 104.19450 * 335.19978 * 15 5 3 17 17 O 1.21290 * 124.94357 * 196.21577 * 16 15 5 18 18 N 1.34418 * 110.11573 * 16.25354 * 16 15 5 19 19 C 1.46503 * 124.34813 * 180.40194 * 18 16 15 20 20 C 1.52995 * 109.47605 * 300.00473 * 19 18 16 21 21 C 1.52998 * 109.46973 * 60.00555 * 19 18 16 22 22 H 1.09003 * 109.47269 * 299.99758 * 1 2 3 23 23 H 1.08999 * 109.47661 * 60.00257 * 1 2 3 24 24 H 1.09005 * 109.47097 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46919 * 240.00393 * 2 1 3 26 26 H 1.08996 * 109.47238 * 119.99458 * 2 1 3 27 27 H 0.97000 * 119.99707 * 180.02562 * 10 9 7 28 28 H 1.09000 * 110.48678 * 93.87983 * 15 5 3 29 29 H 1.09004 * 110.48448 * 216.52540 * 15 5 3 30 30 H 1.09002 * 109.47050 * 179.97438 * 19 18 16 31 31 H 1.09002 * 109.47415 * 59.99613 * 20 19 18 32 32 H 1.08994 * 109.47167 * 180.02562 * 20 19 18 33 33 H 1.09003 * 109.47189 * 299.99906 * 20 19 18 34 34 H 1.08996 * 109.47256 * 59.99364 * 21 19 18 35 35 H 1.09004 * 109.47181 * 179.97438 * 21 19 18 36 36 H 1.09006 * 109.47094 * 299.99790 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5728 2.0072 -0.8070 5 6 3.5771 1.4661 -0.1511 6 1 3.9024 2.3552 -0.6913 7 6 4.0724 0.2149 -0.8295 8 1 4.1855 -0.6977 -0.2633 9 6 4.3811 0.2352 -2.1731 10 7 4.2429 1.3465 -2.8628 11 14 4.9957 -1.3155 -3.0139 12 1 3.9685 -2.3817 -2.8979 13 1 5.2540 -1.0316 -4.4484 14 1 6.2525 -1.7662 -2.3639 15 6 4.0382 1.5153 1.3240 16 6 2.8672 2.1300 2.0584 17 8 2.9166 2.5984 3.1761 18 7 1.7637 2.0808 1.2924 19 6 0.4537 2.5977 1.6958 20 6 -0.0151 1.8706 2.9577 21 6 0.5630 4.0967 1.9819 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 4.4597 1.3607 -3.8081 28 1 4.2363 0.5099 1.6955 29 1 4.9241 2.1422 1.4261 30 1 -0.2649 2.4330 0.8929 31 1 0.7036 2.0358 3.7604 32 1 -0.9900 2.2549 3.2575 33 1 -0.0930 0.8026 2.7539 34 1 0.8969 4.6148 1.0829 35 1 -0.4119 4.4815 2.2816 36 1 1.2817 4.2620 2.7846 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709989258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:53 Heat of formation + Delta-G solvation = -54.340350 kcal Electronic energy + Delta-G solvation = -16706.892688 eV Core-core repulsion = 14190.278585 eV Total energy + Delta-G solvation = -2516.614103 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.92690 -36.18382 -34.86556 -32.45309 -31.76274 -29.31632 -26.95892 -26.34824 -24.56955 -22.27097 -21.34375 -19.81717 -18.03892 -16.34233 -16.03531 -15.02368 -14.78671 -14.48898 -13.66390 -13.41133 -13.21232 -13.06430 -12.61151 -12.51896 -12.29944 -11.79977 -11.62404 -11.50131 -11.17091 -10.96804 -10.84839 -10.77529 -10.64158 -10.53107 -10.05772 -9.78178 -9.66394 -9.13463 -8.71504 -8.54962 -7.88088 -6.18345 -4.20450 3.23563 3.29982 3.32110 3.42225 3.77362 4.31155 5.09149 5.12553 5.41020 5.51904 5.61355 5.72186 5.80218 5.85413 5.90580 5.98189 6.09596 6.15194 6.20652 6.28645 6.39839 6.47907 6.56027 6.59091 6.65822 6.68963 6.85715 7.18146 7.27081 7.50842 7.59074 7.76567 7.98986 8.24043 8.85478 9.04239 9.42194 10.90857 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035910 B = 0.009022 C = 0.008269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.545491 B = 3102.669114 C = 3385.325650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C 0.131 3.869 4 H 0.067 0.933 5 C 0.042 3.958 6 H 0.072 0.928 7 C -0.505 4.505 8 H 0.060 0.940 9 C 0.068 3.932 10 N -0.887 5.887 11 Si 0.892 3.108 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C -0.152 4.152 16 C 0.517 3.483 17 O -0.565 6.565 18 N -0.608 5.608 19 C 0.149 3.851 20 C -0.166 4.166 21 C -0.166 4.166 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.264 0.736 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 0.080 4.124 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.150 4.150 3 C 0.028 3.972 4 H 0.085 0.915 5 C 0.022 3.978 6 H 0.091 0.909 7 C -0.543 4.543 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.524 5.524 11 Si 0.719 3.281 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.192 4.192 16 C 0.307 3.693 17 O -0.446 6.446 18 N -0.341 5.341 19 C 0.045 3.955 20 C -0.224 4.224 21 C -0.224 4.224 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.178 0.433 4.504 8.486 hybrid contribution 0.187 -0.834 -0.649 1.073 sum -6.992 -0.401 3.855 7.994 Atomic orbital electron populations 1.22073 0.98312 1.00524 1.01026 1.21750 0.92797 0.97223 1.03256 1.22284 1.00852 0.91989 0.82029 0.91459 1.19843 0.88088 1.00219 0.89614 0.90944 1.20862 1.44049 0.95452 0.93910 0.92135 1.25013 0.94787 0.96128 0.97648 1.69906 1.47762 1.26171 1.08576 0.86657 0.79585 0.83374 0.78466 1.20043 1.21272 1.20080 1.22584 0.95906 1.01210 0.99527 1.21332 0.85939 0.77314 0.84743 1.90563 1.85723 1.48837 1.19428 1.48702 1.08176 1.58440 1.18763 1.20855 0.84813 0.93079 0.96708 1.22221 1.01054 1.00408 0.98755 1.22172 1.01958 0.95575 1.02662 0.93005 0.93408 0.93825 0.88908 0.93083 0.92570 0.89277 0.90183 0.89923 0.91158 0.92429 0.92431 0.92610 0.92382 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.29 37.16 0.35 -2.20 16 2 C -0.11 -2.11 4.89 -26.73 -0.13 -2.24 16 3 C 0.13 2.65 2.99 -67.01 -0.20 2.45 16 4 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 5 C 0.04 0.95 3.13 -90.14 -0.28 0.67 16 6 H 0.07 1.85 7.36 -51.93 -0.38 1.46 16 7 C -0.50 -12.30 5.99 -34.44 -0.21 -12.51 16 8 H 0.06 1.46 7.71 -52.49 -0.40 1.05 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -23.67 12.82 55.43 0.71 -22.96 16 11 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 C -0.15 -3.20 6.41 -26.74 -0.17 -3.37 16 16 C 0.52 10.86 7.41 -10.86 -0.08 10.78 16 17 O -0.56 -12.85 15.12 5.55 0.08 -12.77 16 18 N -0.61 -11.51 2.46 -157.37 -0.39 -11.90 16 19 C 0.15 2.38 2.39 -67.93 -0.16 2.21 16 20 C -0.17 -2.47 8.84 37.16 0.33 -2.14 16 21 C -0.17 -2.52 9.20 37.16 0.34 -2.18 16 22 H 0.05 0.77 4.01 -51.93 -0.21 0.56 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 1.93 6.69 -51.93 -0.35 1.58 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.09 1.83 7.82 -51.93 -0.41 1.43 16 29 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.08 1.22 6.71 -51.93 -0.35 0.87 16 31 H 0.07 1.20 6.77 -51.93 -0.35 0.85 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.85 6.79 -51.93 -0.35 0.50 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.21 6.80 -51.93 -0.35 0.86 16 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -26.63 281.37 -6.36 -32.99 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.67 Total: 2.60 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.32 Total: -6.92 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.32 Total: -34.86 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.63 -6.36 -32.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709989258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.354 kcal (2) G-P(sol) polarization free energy of solvation -26.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds