Wall clock time and date at job start Mon Mar 30 2020 02:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46784 * 2 1 4 4 H 1.09004 * 110.21513 * 307.91422 * 3 2 1 5 5 C 1.54479 * 110.24481 * 185.98572 * 3 2 1 6 6 H 1.08993 * 110.97016 * 148.20841 * 5 3 2 7 7 C 1.50704 * 111.00139 * 24.45806 * 5 3 2 8 8 H 1.07997 * 120.00098 * 279.91180 * 7 5 3 9 9 C 1.37874 * 119.99917 * 99.91296 * 7 5 3 10 10 N 1.31518 * 119.99851 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 120.00163 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47061 * 59.99922 * 11 9 7 13 13 H 1.48498 * 109.47005 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47444 * 300.00069 * 11 9 7 15 15 C 1.54631 * 101.76382 * 266.32884 * 5 3 2 16 16 C 1.51278 * 104.19450 * 335.19978 * 15 5 3 17 17 O 1.21290 * 124.94357 * 196.21577 * 16 15 5 18 18 N 1.34418 * 110.11573 * 16.25354 * 16 15 5 19 19 C 1.46503 * 124.34813 * 180.40194 * 18 16 15 20 20 C 1.52995 * 109.47605 * 300.00473 * 19 18 16 21 21 C 1.52998 * 109.46973 * 60.00555 * 19 18 16 22 22 H 1.09003 * 109.47269 * 299.99758 * 1 2 3 23 23 H 1.08999 * 109.47661 * 60.00257 * 1 2 3 24 24 H 1.09005 * 109.47097 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46919 * 240.00393 * 2 1 3 26 26 H 1.08996 * 109.47238 * 119.99458 * 2 1 3 27 27 H 0.97000 * 119.99707 * 180.02562 * 10 9 7 28 28 H 1.09000 * 110.48678 * 93.87983 * 15 5 3 29 29 H 1.09004 * 110.48448 * 216.52540 * 15 5 3 30 30 H 1.09002 * 109.47050 * 179.97438 * 19 18 16 31 31 H 1.09002 * 109.47415 * 59.99613 * 20 19 18 32 32 H 1.08994 * 109.47167 * 180.02562 * 20 19 18 33 33 H 1.09003 * 109.47189 * 299.99906 * 20 19 18 34 34 H 1.08996 * 109.47256 * 59.99364 * 21 19 18 35 35 H 1.09004 * 109.47181 * 179.97438 * 21 19 18 36 36 H 1.09006 * 109.47094 * 299.99790 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5728 2.0072 -0.8070 5 6 3.5771 1.4661 -0.1511 6 1 3.9024 2.3552 -0.6913 7 6 4.0724 0.2149 -0.8295 8 1 4.1855 -0.6977 -0.2633 9 6 4.3811 0.2352 -2.1731 10 7 4.2429 1.3465 -2.8628 11 14 4.9957 -1.3155 -3.0139 12 1 3.9685 -2.3817 -2.8979 13 1 5.2540 -1.0316 -4.4484 14 1 6.2525 -1.7662 -2.3639 15 6 4.0382 1.5153 1.3240 16 6 2.8672 2.1300 2.0584 17 8 2.9166 2.5984 3.1761 18 7 1.7637 2.0808 1.2924 19 6 0.4537 2.5977 1.6958 20 6 -0.0151 1.8706 2.9577 21 6 0.5630 4.0967 1.9819 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 4.4597 1.3607 -3.8081 28 1 4.2363 0.5099 1.6955 29 1 4.9241 2.1422 1.4261 30 1 -0.2649 2.4330 0.8929 31 1 0.7036 2.0358 3.7604 32 1 -0.9900 2.2549 3.2575 33 1 -0.0930 0.8026 2.7539 34 1 0.8969 4.6148 1.0829 35 1 -0.4119 4.4815 2.2816 36 1 1.2817 4.2620 2.7846 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709989258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:52 Heat of formation + Delta-G solvation = -68.454484 kcal Electronic energy + Delta-G solvation = -16707.504723 eV Core-core repulsion = 14190.278585 eV Total energy + Delta-G solvation = -2517.226137 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55579 -37.88995 -36.34612 -34.26701 -33.26313 -30.95992 -28.28210 -27.92224 -26.32821 -23.77379 -22.83542 -21.53578 -19.63465 -18.21937 -17.57520 -16.66777 -16.44615 -16.15898 -15.16615 -14.83523 -14.71276 -14.58809 -14.29765 -13.97650 -13.89493 -13.17347 -13.02802 -12.92505 -12.74926 -12.55874 -12.43630 -12.38260 -12.13021 -11.98774 -11.58375 -11.53848 -11.28078 -10.98866 -10.54696 -10.32984 -9.45999 -8.12406 -6.18506 1.48083 1.49975 1.56307 1.73857 2.25121 2.46457 3.18673 3.69818 4.05460 4.13386 4.20874 4.30874 4.34673 4.49999 4.56644 4.62193 4.71425 4.74500 4.84811 4.91937 4.95307 4.97604 5.09830 5.18757 5.26897 5.37050 5.39684 5.53030 5.63259 5.73714 5.81287 5.97583 6.25616 6.42887 6.91385 7.39319 7.46434 8.97063 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035910 B = 0.009022 C = 0.008269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.545491 B = 3102.669114 C = 3385.325650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C 0.140 3.860 4 H 0.059 0.941 5 C 0.036 3.964 6 H 0.038 0.962 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.022 3.978 10 N -0.922 5.922 11 Si 0.949 3.051 12 H -0.266 1.266 13 H -0.290 1.290 14 H -0.274 1.274 15 C -0.148 4.148 16 C 0.514 3.486 17 O -0.583 6.583 18 N -0.600 5.600 19 C 0.138 3.862 20 C -0.158 4.158 21 C -0.160 4.160 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.263 0.737 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 -0.741 4.514 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C 0.037 3.963 4 H 0.077 0.923 5 C 0.016 3.984 6 H 0.057 0.943 7 C -0.542 4.542 8 H 0.081 0.919 9 C -0.178 4.178 10 N -0.560 5.560 11 Si 0.775 3.225 12 H -0.191 1.191 13 H -0.216 1.216 14 H -0.199 1.199 15 C -0.189 4.189 16 C 0.304 3.696 17 O -0.466 6.466 18 N -0.332 5.332 19 C 0.036 3.964 20 C -0.216 4.216 21 C -0.218 4.218 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.882 -0.397 4.901 10.152 hybrid contribution 0.705 -0.531 -0.735 1.148 sum -8.178 -0.928 4.166 9.225 Atomic orbital electron populations 1.21997 0.95387 1.01977 1.01831 1.21612 0.95362 0.95447 1.01928 1.22010 0.98761 0.93154 0.82369 0.92269 1.19732 0.90282 0.98287 0.90066 0.94315 1.21066 1.43274 0.95827 0.94005 0.91944 1.25662 0.95266 0.98489 0.98356 1.70026 1.49405 1.27941 1.08645 0.85749 0.79173 0.80439 0.77183 1.19104 1.21585 1.19909 1.22510 0.96320 1.01612 0.98414 1.21222 0.86413 0.77366 0.84608 1.90556 1.86037 1.49821 1.20164 1.48708 1.09072 1.57704 1.17679 1.21233 0.83405 0.93668 0.98086 1.22152 1.01972 1.00503 0.96999 1.22128 1.03189 0.95047 1.01445 0.91798 0.92937 0.92143 0.91019 0.93546 0.92823 0.88769 0.90273 0.87881 0.93671 0.89108 0.92261 0.93303 0.88935 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.29 71.98 0.67 -3.74 16 2 C -0.10 -3.82 4.89 30.60 0.15 -3.67 16 3 C 0.14 5.61 2.99 45.45 0.14 5.74 16 4 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 5 C 0.04 1.65 3.13 -10.48 -0.03 1.62 16 6 H 0.04 2.04 7.36 -2.39 -0.02 2.03 16 7 C -0.50 -24.67 5.99 25.60 0.15 -24.51 16 8 H 0.06 2.99 7.71 -2.91 -0.02 2.96 16 9 C 0.02 1.11 5.46 84.65 0.46 1.58 16 10 N -0.92 -50.02 12.82 21.45 0.27 -49.75 16 11 Si 0.95 40.39 29.54 68.60 2.03 42.42 16 12 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 13 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 15 C -0.15 -6.29 6.41 30.59 0.20 -6.09 16 16 C 0.51 21.49 7.41 87.90 0.65 22.14 16 17 O -0.58 -26.45 15.12 -3.06 -0.05 -26.50 16 18 N -0.60 -22.12 2.46 -770.40 -1.90 -24.01 16 19 C 0.14 4.07 2.39 44.99 0.11 4.18 16 20 C -0.16 -4.24 8.84 71.98 0.64 -3.61 16 21 C -0.16 -4.55 9.20 71.98 0.66 -3.88 16 22 H 0.06 1.66 4.01 -2.39 -0.01 1.65 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.07 2.93 6.69 -2.39 -0.02 2.91 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 28 H 0.09 3.86 7.82 -2.39 -0.02 3.85 16 29 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.10 2.67 6.71 -2.39 -0.02 2.66 16 31 H 0.04 1.45 6.77 -2.39 -0.02 1.44 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.56 6.79 -2.39 -0.02 1.54 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.51 6.80 -2.38 -0.02 1.50 16 Total: -1.00 -56.91 281.37 5.20 -51.71 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.05 Total: 16.38 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 3.79 Total: -10.25 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -1.62 Total: -73.76 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -56.91 5.20 -51.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709989258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.742 kcal (2) G-P(sol) polarization free energy of solvation -56.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds