Wall clock time and date at job start Mon Mar 30 2020 03:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47351 * 2 1 4 4 H 1.08999 * 109.47477 * 178.68007 * 3 2 1 5 5 C 1.50705 * 109.47303 * 58.67772 * 3 2 1 6 6 H 1.07995 * 119.99843 * 240.00591 * 5 3 2 7 7 C 1.37873 * 120.00041 * 59.99994 * 5 3 2 8 8 N 1.31518 * 119.99951 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00016 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47295 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46942 * 120.00324 * 9 7 5 12 12 H 1.48502 * 109.46937 * 239.99920 * 9 7 5 13 13 N 1.46902 * 109.47097 * 298.68083 * 3 2 1 14 14 C 1.50334 * 110.99512 * 300.65216 * 13 3 2 15 15 C 1.50936 * 101.80175 * 212.10930 * 14 13 3 16 16 H 1.09003 * 110.29692 * 292.29992 * 15 14 13 17 17 C 1.50170 * 126.41999 * 154.49050 * 15 14 13 18 18 O 1.45597 * 105.10291 * 218.20739 * 17 15 14 19 19 C 1.46105 * 108.95253 * 7.51854 * 18 17 15 20 20 C 1.50659 * 102.44257 * 25.52989 * 19 18 17 21 21 H 1.08993 * 110.20421 * 69.20300 * 20 19 18 22 22 C 1.49950 * 111.00022 * 181.28478 * 13 3 2 23 23 H 1.08997 * 109.47239 * 303.96393 * 1 2 3 24 24 H 1.08999 * 109.47242 * 63.96583 * 1 2 3 25 25 H 1.09000 * 109.47197 * 183.96316 * 1 2 3 26 26 H 1.08996 * 109.47246 * 239.99577 * 2 1 3 27 27 H 1.09002 * 109.47026 * 119.99723 * 2 1 3 28 28 H 0.97001 * 120.00368 * 179.97438 * 8 7 5 29 29 H 1.09006 * 110.96768 * 330.23929 * 14 13 3 30 30 H 1.09002 * 110.96256 * 93.98551 * 14 13 3 31 31 H 1.09005 * 110.31875 * 337.11011 * 17 15 14 32 32 H 1.09002 * 110.32124 * 99.30097 * 17 15 14 33 33 H 1.09001 * 110.81221 * 267.28842 * 19 18 17 34 34 H 1.09001 * 110.81263 * 143.77403 * 19 18 17 35 35 H 1.09001 * 110.43068 * 232.67003 * 22 13 3 36 36 H 1.08997 * 110.43397 * 355.05599 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4426 0.0237 5 6 1.5111 2.1623 1.2138 6 1 0.8926 3.0395 1.0944 7 6 1.8168 1.7010 2.4765 8 7 2.5704 0.6330 2.6219 9 14 1.1607 2.5929 3.9810 10 1 0.3439 3.7557 3.5500 11 1 0.3185 1.6653 4.7782 12 1 2.2976 3.0662 4.8108 13 7 1.5766 2.1257 -1.2151 14 6 2.0725 1.4252 -2.4493 15 6 2.2384 2.5760 -3.4118 16 1 1.2662 2.9947 -3.6717 17 6 3.1697 2.6267 -4.5888 18 8 3.6728 3.9927 -4.6158 19 6 3.2222 4.6883 -3.4126 20 6 3.0203 3.5560 -2.4394 21 1 3.9811 3.1228 -2.1614 22 6 2.0840 3.5358 -1.2654 23 1 -0.3633 0.5741 0.8523 24 1 -0.3634 0.4510 -0.9234 25 1 -0.3633 -1.0252 0.0710 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.7858 0.3085 3.5103 29 1 3.0269 0.9331 -2.2616 30 1 1.3338 0.7129 -2.8169 31 1 3.9913 1.9235 -4.4519 32 1 2.6293 2.4042 -5.5089 33 1 2.2845 5.2127 -3.5966 34 1 3.9877 5.3761 -3.0532 35 1 1.2598 4.2313 -1.4239 36 1 2.6169 3.7815 -0.3468 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718251375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:28 Heat of formation + Delta-G solvation = -22.104354 kcal Electronic energy + Delta-G solvation = -16528.620282 eV Core-core repulsion = 14013.404037 eV Total energy + Delta-G solvation = -2515.216245 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36539 -36.90925 -34.04493 -31.49029 -30.27767 -29.59374 -26.76740 -25.93889 -23.94756 -22.44987 -20.30215 -20.10089 -18.97002 -16.66137 -16.01476 -15.49493 -14.89290 -14.65719 -14.31132 -13.80802 -13.34467 -13.17274 -12.50895 -12.24810 -12.10210 -11.78596 -11.51197 -11.20397 -11.00113 -10.94599 -10.58722 -10.56784 -10.39718 -10.01375 -9.78197 -9.67381 -9.49520 -9.36343 -8.85946 -8.46136 -7.28834 -6.03375 -4.06720 3.27404 3.36011 3.39968 3.94056 4.07340 4.38284 4.76097 4.97850 5.24424 5.28658 5.46288 5.49708 5.59994 5.74437 5.86705 5.88313 6.02466 6.20436 6.28249 6.41011 6.47131 6.56816 6.60105 6.65290 6.76981 6.82148 7.08333 7.16144 7.37323 7.56913 7.69428 7.81484 8.02449 8.29084 8.49636 8.98744 9.57182 11.03218 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037703 B = 0.008104 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.468914 B = 3454.235761 C = 3887.783897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C 0.208 3.792 4 H -0.003 1.003 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.511 5.511 14 C 0.062 3.938 15 C -0.153 4.153 16 H 0.089 0.911 17 C 0.071 3.929 18 O -0.397 6.397 19 C 0.073 3.927 20 C -0.166 4.166 21 H 0.080 0.920 22 C 0.069 3.931 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.090 0.910 28 H 0.260 0.740 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 3.190 -9.426 9.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.102 3.898 4 H 0.015 0.985 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.236 5.236 14 C -0.066 4.066 15 C -0.172 4.172 16 H 0.107 0.893 17 C -0.006 4.006 18 O -0.317 6.317 19 C -0.004 4.004 20 C -0.186 4.186 21 H 0.098 0.902 22 C -0.059 4.059 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.380 3.140 -9.387 9.906 hybrid contribution 0.491 0.214 1.086 1.210 sum 0.111 3.353 -8.302 8.954 Atomic orbital electron populations 1.21468 0.97223 0.97594 1.01502 1.21523 0.95325 0.98011 0.99952 1.19488 0.93003 0.91303 0.86022 0.98493 1.21062 1.30958 1.11881 0.89532 0.91974 1.24905 0.95245 0.95107 0.98898 1.69891 1.37464 1.23150 1.22627 0.86518 0.78678 0.79781 0.82936 1.19728 1.21042 1.21202 1.65559 1.55820 1.00152 1.02060 1.22242 0.98914 0.94641 0.90777 1.23018 0.99728 0.99770 0.94729 0.89253 1.22139 0.96526 0.84284 0.97627 1.89306 1.75722 1.24038 1.42677 1.22427 0.99824 0.93907 0.84243 1.23354 1.00559 0.97298 0.97379 0.90193 1.21933 0.95494 0.92737 0.95690 0.92112 0.94191 0.96581 0.96901 0.89136 0.93052 0.93841 0.90759 0.91623 0.90750 0.91679 0.89659 0.91648 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.52 37.16 0.35 -2.29 16 2 C -0.11 -2.58 5.27 -26.73 -0.14 -2.72 16 3 C 0.21 5.05 1.45 -68.86 -0.10 4.95 16 4 H 0.00 -0.07 8.13 -51.93 -0.42 -0.49 16 5 C -0.50 -13.01 6.22 -34.44 -0.21 -13.22 16 6 H 0.06 1.65 7.49 -52.49 -0.39 1.26 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -24.84 11.33 55.43 0.63 -24.21 16 9 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.51 -10.53 4.52 -225.30 -1.02 -11.55 16 14 C 0.06 1.09 5.11 -2.93 -0.01 1.07 16 15 C -0.15 -2.32 3.02 -89.93 -0.27 -2.59 16 16 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 17 C 0.07 0.97 7.62 35.75 0.27 1.24 16 18 O -0.40 -6.07 11.60 -35.23 -0.41 -6.48 16 19 C 0.07 1.01 7.62 35.99 0.27 1.28 16 20 C -0.17 -2.65 2.97 -90.06 -0.27 -2.92 16 21 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 22 C 0.07 1.29 6.04 -3.51 -0.02 1.27 16 23 H 0.06 1.45 7.04 -51.93 -0.37 1.08 16 24 H 0.04 0.83 7.76 -51.93 -0.40 0.42 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.01 0.27 7.06 -51.93 -0.37 -0.10 16 27 H 0.09 2.38 6.11 -51.93 -0.32 2.07 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.04 0.80 7.81 -51.93 -0.41 0.39 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.57 6.99 -51.93 -0.36 1.21 16 LS Contribution 278.42 15.07 4.20 4.20 Total: -1.00 -27.50 278.42 -7.82 -35.33 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.97 Total: -0.77 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.22 Total: -12.43 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.39 Total: -35.76 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.41 Total: -6.48 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.50 -7.82 -35.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718251375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.221 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds