Wall clock time and date at job start Mon Mar 30 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47351 * 2 1 4 4 H 1.08999 * 109.47477 * 178.68007 * 3 2 1 5 5 C 1.50705 * 109.47303 * 58.67772 * 3 2 1 6 6 H 1.07995 * 119.99843 * 240.00591 * 5 3 2 7 7 C 1.37873 * 120.00041 * 59.99994 * 5 3 2 8 8 N 1.31518 * 119.99951 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00016 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47295 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46942 * 120.00324 * 9 7 5 12 12 H 1.48502 * 109.46937 * 239.99920 * 9 7 5 13 13 N 1.46902 * 109.47097 * 298.68083 * 3 2 1 14 14 C 1.50334 * 110.99512 * 300.65216 * 13 3 2 15 15 C 1.50936 * 101.80175 * 212.10930 * 14 13 3 16 16 H 1.09003 * 110.29692 * 292.29992 * 15 14 13 17 17 C 1.50170 * 126.41999 * 154.49050 * 15 14 13 18 18 O 1.45597 * 105.10291 * 218.20739 * 17 15 14 19 19 C 1.46105 * 108.95253 * 7.51854 * 18 17 15 20 20 C 1.50659 * 102.44257 * 25.52989 * 19 18 17 21 21 H 1.08993 * 110.20421 * 69.20300 * 20 19 18 22 22 C 1.49950 * 111.00022 * 181.28478 * 13 3 2 23 23 H 1.08997 * 109.47239 * 303.96393 * 1 2 3 24 24 H 1.08999 * 109.47242 * 63.96583 * 1 2 3 25 25 H 1.09000 * 109.47197 * 183.96316 * 1 2 3 26 26 H 1.08996 * 109.47246 * 239.99577 * 2 1 3 27 27 H 1.09002 * 109.47026 * 119.99723 * 2 1 3 28 28 H 0.97001 * 120.00368 * 179.97438 * 8 7 5 29 29 H 1.09006 * 110.96768 * 330.23929 * 14 13 3 30 30 H 1.09002 * 110.96256 * 93.98551 * 14 13 3 31 31 H 1.09005 * 110.31875 * 337.11011 * 17 15 14 32 32 H 1.09002 * 110.32124 * 99.30097 * 17 15 14 33 33 H 1.09001 * 110.81221 * 267.28842 * 19 18 17 34 34 H 1.09001 * 110.81263 * 143.77403 * 19 18 17 35 35 H 1.09001 * 110.43068 * 232.67003 * 22 13 3 36 36 H 1.08997 * 110.43397 * 355.05599 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4426 0.0237 5 6 1.5111 2.1623 1.2138 6 1 0.8926 3.0395 1.0944 7 6 1.8168 1.7010 2.4765 8 7 2.5704 0.6330 2.6219 9 14 1.1607 2.5929 3.9810 10 1 0.3439 3.7557 3.5500 11 1 0.3185 1.6653 4.7782 12 1 2.2976 3.0662 4.8108 13 7 1.5766 2.1257 -1.2151 14 6 2.0725 1.4252 -2.4493 15 6 2.2384 2.5760 -3.4118 16 1 1.2662 2.9947 -3.6717 17 6 3.1697 2.6267 -4.5888 18 8 3.6728 3.9927 -4.6158 19 6 3.2222 4.6883 -3.4126 20 6 3.0203 3.5560 -2.4394 21 1 3.9811 3.1228 -2.1614 22 6 2.0840 3.5358 -1.2654 23 1 -0.3633 0.5741 0.8523 24 1 -0.3634 0.4510 -0.9234 25 1 -0.3633 -1.0252 0.0710 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.7858 0.3085 3.5103 29 1 3.0269 0.9331 -2.2616 30 1 1.3338 0.7129 -2.8169 31 1 3.9913 1.9235 -4.4519 32 1 2.6293 2.4042 -5.5089 33 1 2.2845 5.2127 -3.5966 34 1 3.9877 5.3761 -3.0532 35 1 1.2598 4.2313 -1.4239 36 1 2.6169 3.7815 -0.3468 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718251375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:27 Heat of formation + Delta-G solvation = -39.717311 kcal Electronic energy + Delta-G solvation = -16529.384037 eV Core-core repulsion = 14013.404037 eV Total energy + Delta-G solvation = -2515.980000 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.68020 -38.43059 -35.76195 -33.40715 -31.61343 -31.09347 -28.45313 -27.42655 -25.72911 -24.03209 -21.61528 -21.50462 -20.75571 -18.01784 -17.91269 -17.04544 -16.41470 -16.06994 -15.78145 -15.26064 -14.95272 -14.87857 -14.15675 -13.78976 -13.60308 -13.44203 -12.93081 -12.86394 -12.71389 -12.51032 -12.37936 -12.22443 -11.86619 -11.78040 -11.51622 -11.22192 -11.12859 -10.81911 -10.57900 -10.49962 -8.99975 -8.09112 -6.18494 1.39823 1.42995 1.53433 2.42145 2.79189 2.83076 3.17968 3.28681 3.71039 3.99159 4.24752 4.30305 4.36869 4.48914 4.58297 4.60872 4.69013 4.73692 4.82945 4.87188 4.90999 4.98568 5.04708 5.11858 5.24368 5.30255 5.39434 5.46064 5.68848 5.73189 5.74379 5.85461 6.21331 6.34580 6.60735 6.93414 7.48928 8.96728 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037703 B = 0.008104 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.468914 B = 3454.235761 C = 3887.783897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C 0.218 3.782 4 H -0.044 1.044 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.519 5.519 14 C 0.062 3.938 15 C -0.139 4.139 16 H 0.098 0.902 17 C 0.073 3.927 18 O -0.410 6.410 19 C 0.078 3.922 20 C -0.162 4.162 21 H 0.060 0.940 22 C 0.071 3.929 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.259 0.741 29 H 0.031 0.969 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 3.921 -10.816 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.145 4.145 3 C 0.110 3.890 4 H -0.027 1.027 5 C -0.539 4.539 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.244 5.244 14 C -0.065 4.065 15 C -0.158 4.158 16 H 0.116 0.884 17 C -0.003 4.003 18 O -0.330 6.330 19 C 0.002 3.998 20 C -0.182 4.182 21 H 0.078 0.922 22 C -0.057 4.057 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.337 3.881 -10.794 11.549 hybrid contribution 0.808 -0.020 1.486 1.692 sum -0.529 3.861 -9.309 10.091 Atomic orbital electron populations 1.21325 0.95644 0.98574 1.01008 1.21406 0.96596 0.97311 0.99169 1.19222 0.90356 0.92093 0.87313 1.02692 1.21252 1.30477 1.11630 0.90582 0.92644 1.25613 0.95575 0.95800 1.01517 1.70022 1.38561 1.24369 1.23062 0.85598 0.78075 0.78826 0.79725 1.19112 1.20786 1.21032 1.65495 1.56005 1.01083 1.01813 1.22248 0.98544 0.95561 0.90172 1.22917 1.00388 0.97784 0.94681 0.88356 1.22236 0.96391 0.83767 0.97902 1.89299 1.76167 1.24681 1.42893 1.22500 1.01221 0.93124 0.82959 1.23193 0.99046 0.99090 0.96889 0.92175 1.21849 0.96309 0.91877 0.95646 0.94465 0.92920 0.94572 0.95340 0.92215 0.93137 0.95096 0.89539 0.91465 0.88100 0.89905 0.88357 0.90222 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.52 71.98 0.69 -3.96 16 2 C -0.11 -5.04 5.27 30.59 0.16 -4.88 16 3 C 0.22 10.78 1.45 44.17 0.06 10.85 16 4 H -0.04 -2.52 8.13 -2.39 -0.02 -2.54 16 5 C -0.50 -26.76 6.22 25.60 0.16 -26.60 16 6 H 0.06 2.98 7.49 -2.91 -0.02 2.96 16 7 C 0.01 0.73 5.30 84.65 0.45 1.18 16 8 N -0.92 -52.50 11.33 21.45 0.24 -52.26 16 9 Si 0.95 43.34 29.54 68.60 2.03 45.36 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 N -0.52 -21.24 4.52 -866.71 -3.92 -25.16 16 14 C 0.06 2.11 5.11 84.96 0.43 2.54 16 15 C -0.14 -3.87 3.02 -10.35 -0.03 -3.90 16 16 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 17 C 0.07 1.79 7.62 71.07 0.54 2.33 16 18 O -0.41 -11.37 11.60 -148.98 -1.73 -13.10 16 19 C 0.08 1.98 7.62 71.22 0.54 2.52 16 20 C -0.16 -5.00 2.97 -10.43 -0.03 -5.03 16 21 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 22 C 0.07 2.61 6.04 84.80 0.51 3.13 16 23 H 0.04 1.75 7.04 -2.39 -0.02 1.73 16 24 H 0.05 2.09 7.76 -2.39 -0.02 2.07 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.03 1.22 7.06 -2.39 -0.02 1.20 16 27 H 0.06 3.22 6.11 -2.39 -0.01 3.20 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.03 1.13 7.81 -2.38 -0.02 1.11 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.05 2.01 6.99 -2.39 -0.02 2.00 16 Total: -1.00 -59.15 278.42 1.14 -58.00 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.03 Total: 8.98 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 3.49 Total: -21.83 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -3.67 Total: -77.42 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.73 Total: -13.10 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -59.15 1.14 -58.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718251375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.284 kcal (2) G-P(sol) polarization free energy of solvation -59.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds