Wall clock time and date at job start Mon Mar 30 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47835 * 2 1 4 4 C 1.50697 * 109.47208 * 239.99596 * 2 1 3 5 5 H 1.08000 * 120.00408 * 240.00772 * 4 2 1 6 6 C 1.37881 * 120.00037 * 60.00524 * 4 2 1 7 7 N 1.31512 * 119.99763 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00357 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47477 * 89.99729 * 8 6 4 10 10 H 1.48504 * 109.47229 * 209.99901 * 8 6 4 11 11 H 1.48511 * 109.46957 * 329.99651 * 8 6 4 12 12 N 1.46898 * 109.46619 * 120.00028 * 2 1 3 13 13 C 1.47841 * 111.00452 * 62.71293 * 12 2 1 14 14 C 1.52606 * 111.46304 * 177.41583 * 13 12 2 15 15 O 1.43906 * 111.59548 * 309.50395 * 14 13 12 16 16 C 1.41614 * 110.79179 * 56.13025 * 15 14 13 17 17 H 1.08996 * 110.24152 * 56.16161 * 16 15 14 18 18 C 1.53151 * 116.72159 * 182.95310 * 16 15 14 19 19 C 1.55313 * 102.99269 * 157.01260 * 18 16 15 20 20 C 1.54900 * 106.35033 * 336.05657 * 19 18 16 21 21 C 1.45392 * 110.91378 * 183.08500 * 12 2 1 22 22 H 1.09004 * 109.76946 * 293.19970 * 21 12 2 23 23 H 1.08997 * 109.47289 * 173.06739 * 1 2 3 24 24 H 1.09001 * 109.46922 * 293.07438 * 1 2 3 25 25 H 1.09000 * 109.46627 * 53.06871 * 1 2 3 26 26 H 0.96996 * 120.00312 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.07266 * 56.92291 * 13 12 2 28 28 H 1.09004 * 109.06828 * 297.90031 * 13 12 2 29 29 H 1.09006 * 109.05135 * 70.04572 * 14 13 12 30 30 H 1.08996 * 109.05839 * 189.02805 * 14 13 12 31 31 H 1.09005 * 110.71359 * 275.38719 * 18 16 15 32 32 H 1.09001 * 110.71366 * 38.46388 * 18 16 15 33 33 H 1.08998 * 110.08056 * 95.27766 * 19 18 16 34 34 H 1.08997 * 110.07851 * 216.83658 * 19 18 16 35 35 H 1.08995 * 110.26472 * 115.53763 * 20 19 18 36 36 H 1.08993 * 110.26801 * 237.49842 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4867 -0.1415 -5.1123 11 1 3.6295 -1.7585 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 1.5996 -2.1100 1.2015 14 6 2.1559 -2.8555 2.4113 15 8 3.5732 -2.6512 2.5536 16 6 3.8765 -1.2702 2.6331 17 1 3.3233 -0.8091 3.4512 18 6 5.3588 -0.8944 2.7171 19 6 5.3783 0.5684 2.1956 20 6 4.1213 0.7307 1.3051 21 6 3.4712 -0.6479 1.2684 22 1 3.8971 -1.2348 0.4546 23 1 -0.3634 -1.0201 -0.1240 24 1 -0.3633 0.4028 0.9455 25 1 -0.3632 0.6175 -0.8215 26 1 0.7084 1.1608 -3.4844 27 1 1.9597 -2.5895 0.2912 28 1 0.5109 -2.1588 1.2228 29 1 1.6529 -2.4997 3.3106 30 1 1.9611 -3.9214 2.2930 31 1 5.7106 -0.9409 3.7478 32 1 5.9577 -1.5425 2.0773 33 1 5.3361 1.2649 3.0330 34 1 6.2789 0.7440 1.6073 35 1 3.4389 1.4582 1.7443 36 1 4.4079 1.0412 0.3004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043425394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:30 Heat of formation + Delta-G solvation = -43.910160 kcal Electronic energy + Delta-G solvation = -16871.813695 eV Core-core repulsion = 14355.651879 eV Total energy + Delta-G solvation = -2516.161816 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.77948 -35.83857 -35.53615 -32.49458 -29.47182 -28.64785 -27.64835 -25.15932 -24.76983 -22.11851 -20.45719 -20.02547 -18.85434 -16.27820 -16.01758 -15.40836 -15.08033 -14.57895 -14.30774 -13.77753 -13.33411 -13.10189 -12.62563 -12.17430 -11.98344 -11.46289 -11.21153 -11.03048 -10.89139 -10.80078 -10.62319 -10.48117 -10.39894 -10.18364 -10.00200 -9.81795 -9.61531 -9.26541 -8.70384 -8.41252 -7.22248 -6.01374 -4.12840 3.25520 3.32886 3.36405 4.13784 4.38773 4.93652 5.07127 5.12962 5.25352 5.43539 5.64772 5.70266 5.77478 5.85381 5.90257 6.00678 6.07286 6.11870 6.31675 6.36783 6.51429 6.58537 6.71241 6.78557 6.89153 6.91195 7.02869 7.16791 7.52447 7.62708 7.68854 7.92767 8.12469 8.29068 8.38414 8.96076 9.54482 10.99872 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028097 B = 0.010000 C = 0.009298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.303301 B = 2799.413301 C = 3010.799872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.202 3.798 3 H 0.043 0.957 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.518 5.518 13 C 0.019 3.981 14 C 0.064 3.936 15 O -0.380 6.380 16 C 0.075 3.925 17 H 0.065 0.935 18 C -0.111 4.111 19 C -0.117 4.117 20 C -0.108 4.108 21 C 0.056 3.944 22 H 0.053 0.947 23 H 0.026 0.974 24 H 0.014 0.986 25 H 0.080 0.920 26 H 0.261 0.739 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 -2.424 8.610 10.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.096 3.904 3 H 0.061 0.939 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.525 5.525 8 Si 0.714 3.286 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.242 5.242 13 C -0.110 4.110 14 C -0.013 4.013 15 O -0.299 6.299 16 C 0.017 3.983 17 H 0.083 0.917 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.146 4.146 21 C -0.054 4.054 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.318 -2.194 8.896 10.129 hybrid contribution 0.331 -0.730 -1.830 1.997 sum 4.649 -2.923 7.067 8.950 Atomic orbital electron populations 1.21767 0.97815 0.99887 0.99174 1.19330 0.92264 0.94372 0.84410 0.93923 1.21668 1.31859 1.12875 0.91670 0.92583 1.24887 0.94825 0.94799 0.98815 1.69892 1.36449 1.22704 1.23430 0.86689 0.79310 0.79553 0.83042 1.20704 1.21163 1.20023 1.63315 1.07709 1.11210 1.41949 1.22645 1.00632 0.90547 0.97170 1.22706 0.81021 0.99756 0.97846 1.87932 1.23602 1.24204 1.94159 1.22818 0.95861 0.81965 0.97699 0.91696 1.22092 0.94994 0.96784 1.01040 1.22413 0.98625 0.95357 0.99132 1.21731 0.95701 0.97232 0.99964 1.22400 0.90474 0.96454 0.96108 0.92862 0.95452 0.96651 0.90164 0.92931 0.93002 0.90398 0.93439 0.89581 0.91583 0.91002 0.91858 0.91717 0.91312 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.50 37.16 0.32 -2.78 16 2 C 0.20 5.01 2.23 -68.86 -0.15 4.86 16 3 H 0.04 1.16 7.35 -51.93 -0.38 0.78 16 4 C -0.54 -14.51 7.07 -34.44 -0.24 -14.76 16 5 H 0.06 1.54 5.56 -52.49 -0.29 1.25 16 6 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 7 N -0.89 -24.90 11.40 55.43 0.63 -24.27 16 8 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.52 -11.16 4.80 -219.53 -1.05 -12.22 16 13 C 0.02 0.37 4.88 -3.51 -0.02 0.35 16 14 C 0.06 1.07 6.86 36.96 0.25 1.33 16 15 O -0.38 -7.02 10.88 -35.18 -0.38 -7.40 16 16 C 0.08 1.31 3.08 -25.39 -0.08 1.23 16 17 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 18 C -0.11 -1.63 6.74 -25.43 -0.17 -1.80 16 19 C -0.12 -1.66 6.88 -24.50 -0.17 -1.83 16 20 C -0.11 -1.95 5.61 -26.00 -0.15 -2.10 16 21 C 0.06 1.12 1.60 -67.54 -0.11 1.01 16 22 H 0.05 1.23 6.81 -51.93 -0.35 0.88 16 23 H 0.03 0.64 6.87 -51.93 -0.36 0.28 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 2.11 6.29 -51.93 -0.33 1.78 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.05 1.15 6.19 -51.93 -0.32 0.83 16 28 H 0.08 1.51 6.63 -51.93 -0.34 1.17 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 272.07 15.07 4.10 4.10 Total: -1.00 -28.11 272.07 -8.07 -36.18 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.74 Total: 0.05 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.61 Total: -12.68 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.42 Total: -36.49 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.38 Total: -7.40 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.11 -8.07 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043425394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.731 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds