Wall clock time and date at job start Mon Mar 30 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47835 * 2 1 4 4 C 1.50697 * 109.47208 * 239.99596 * 2 1 3 5 5 H 1.08000 * 120.00408 * 240.00772 * 4 2 1 6 6 C 1.37881 * 120.00037 * 60.00524 * 4 2 1 7 7 N 1.31512 * 119.99763 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00357 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47477 * 89.99729 * 8 6 4 10 10 H 1.48504 * 109.47229 * 209.99901 * 8 6 4 11 11 H 1.48511 * 109.46957 * 329.99651 * 8 6 4 12 12 N 1.46898 * 109.46619 * 120.00028 * 2 1 3 13 13 C 1.47841 * 111.00452 * 62.71293 * 12 2 1 14 14 C 1.52606 * 111.46304 * 177.41583 * 13 12 2 15 15 O 1.43906 * 111.59548 * 309.50395 * 14 13 12 16 16 C 1.41614 * 110.79179 * 56.13025 * 15 14 13 17 17 H 1.08996 * 110.24152 * 56.16161 * 16 15 14 18 18 C 1.53151 * 116.72159 * 182.95310 * 16 15 14 19 19 C 1.55313 * 102.99269 * 157.01260 * 18 16 15 20 20 C 1.54900 * 106.35033 * 336.05657 * 19 18 16 21 21 C 1.45392 * 110.91378 * 183.08500 * 12 2 1 22 22 H 1.09004 * 109.76946 * 293.19970 * 21 12 2 23 23 H 1.08997 * 109.47289 * 173.06739 * 1 2 3 24 24 H 1.09001 * 109.46922 * 293.07438 * 1 2 3 25 25 H 1.09000 * 109.46627 * 53.06871 * 1 2 3 26 26 H 0.96996 * 120.00312 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.07266 * 56.92291 * 13 12 2 28 28 H 1.09004 * 109.06828 * 297.90031 * 13 12 2 29 29 H 1.09006 * 109.05135 * 70.04572 * 14 13 12 30 30 H 1.08996 * 109.05839 * 189.02805 * 14 13 12 31 31 H 1.09005 * 110.71359 * 275.38719 * 18 16 15 32 32 H 1.09001 * 110.71366 * 38.46388 * 18 16 15 33 33 H 1.08998 * 110.08056 * 95.27766 * 19 18 16 34 34 H 1.08997 * 110.07851 * 216.83658 * 19 18 16 35 35 H 1.08995 * 110.26472 * 115.53763 * 20 19 18 36 36 H 1.08993 * 110.26801 * 237.49842 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4867 -0.1415 -5.1123 11 1 3.6295 -1.7585 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 1.5996 -2.1100 1.2015 14 6 2.1559 -2.8555 2.4113 15 8 3.5732 -2.6512 2.5536 16 6 3.8765 -1.2702 2.6331 17 1 3.3233 -0.8091 3.4512 18 6 5.3588 -0.8944 2.7171 19 6 5.3783 0.5684 2.1956 20 6 4.1213 0.7307 1.3051 21 6 3.4712 -0.6479 1.2684 22 1 3.8971 -1.2348 0.4546 23 1 -0.3634 -1.0201 -0.1240 24 1 -0.3633 0.4028 0.9455 25 1 -0.3632 0.6175 -0.8215 26 1 0.7084 1.1608 -3.4844 27 1 1.9597 -2.5895 0.2912 28 1 0.5109 -2.1588 1.2228 29 1 1.6529 -2.4997 3.3106 30 1 1.9611 -3.9214 2.2930 31 1 5.7106 -0.9409 3.7478 32 1 5.9577 -1.5425 2.0773 33 1 5.3361 1.2649 3.0330 34 1 6.2789 0.7440 1.6073 35 1 3.4389 1.4582 1.7443 36 1 4.4079 1.0412 0.3004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043425394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:30 Heat of formation + Delta-G solvation = -62.502943 kcal Electronic energy + Delta-G solvation = -16872.619938 eV Core-core repulsion = 14355.651879 eV Total energy + Delta-G solvation = -2516.968059 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.28957 -37.55191 -36.92557 -34.48342 -31.29589 -30.15539 -29.02556 -27.25371 -26.33230 -23.65412 -22.13796 -21.42239 -20.55915 -18.21546 -17.45988 -17.12774 -16.63487 -16.29107 -15.82831 -15.37253 -15.01519 -14.63893 -14.35688 -13.68836 -13.53155 -13.27511 -13.07203 -12.74009 -12.66999 -12.33469 -12.23754 -12.17571 -11.98836 -11.82009 -11.62330 -11.38036 -11.25190 -11.13113 -10.53163 -10.24266 -9.07486 -8.09917 -6.29500 1.32400 1.34605 1.43338 2.36082 2.79727 3.11310 3.29592 3.75008 3.83485 4.11728 4.21260 4.32731 4.43352 4.46244 4.53797 4.61294 4.70695 4.79596 4.87451 4.99663 5.06030 5.08505 5.10676 5.15461 5.20057 5.23730 5.31202 5.44535 5.52066 5.65896 5.94157 6.12964 6.20948 6.32457 6.52875 6.89071 7.40578 8.88096 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028097 B = 0.010000 C = 0.009298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.303301 B = 2799.413301 C = 3010.799872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.207 3.793 3 H 0.013 0.987 4 C -0.548 4.548 5 H 0.043 0.957 6 C 0.024 3.976 7 N -0.910 5.910 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.516 5.516 13 C 0.019 3.981 14 C 0.067 3.933 15 O -0.391 6.391 16 C 0.080 3.920 17 H 0.073 0.927 18 C -0.106 4.106 19 C -0.106 4.106 20 C -0.109 4.109 21 C 0.048 3.952 22 H 0.015 0.985 23 H 0.027 0.973 24 H 0.032 0.968 25 H 0.056 0.944 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 -3.081 10.081 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.031 0.969 4 C -0.587 4.587 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.549 5.549 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.202 1.202 12 N -0.239 5.239 13 C -0.109 4.109 14 C -0.009 4.009 15 O -0.310 6.310 16 C 0.022 3.978 17 H 0.091 0.909 18 C -0.143 4.143 19 C -0.144 4.144 20 C -0.148 4.148 21 C -0.062 4.062 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.165 -2.859 10.376 11.938 hybrid contribution 0.045 -0.520 -2.280 2.339 sum 5.210 -3.378 8.096 10.203 Atomic orbital electron populations 1.21587 0.97299 0.99431 0.99107 1.19107 0.92579 0.93025 0.85262 0.96881 1.21811 1.31541 1.12467 0.92837 0.93907 1.25560 0.95140 0.95521 1.01383 1.69998 1.37238 1.23664 1.24024 0.85780 0.78629 0.78636 0.79947 1.20102 1.20522 1.20222 1.63290 1.08852 1.12095 1.39707 1.22709 1.00974 0.89549 0.97694 1.22790 0.80431 1.00902 0.96806 1.87930 1.24394 1.24658 1.93981 1.22924 0.97909 0.81331 0.95622 0.90867 1.22144 0.92798 0.96470 1.02920 1.22385 0.96790 0.95903 0.99281 1.21730 0.97538 0.95875 0.99621 1.22517 0.89284 0.97489 0.96906 0.96685 0.95396 0.94887 0.92501 0.92829 0.95993 0.90060 0.91449 0.86946 0.88369 0.91482 0.89201 0.90342 0.91828 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.50 71.98 0.61 -5.06 16 2 C 0.21 10.56 2.23 44.17 0.10 10.66 16 3 H 0.01 0.75 7.35 -2.39 -0.02 0.73 16 4 C -0.55 -30.22 7.07 25.60 0.18 -30.04 16 5 H 0.04 2.44 5.56 -2.91 -0.02 2.42 16 6 C 0.02 1.34 5.30 84.66 0.45 1.79 16 7 N -0.91 -52.16 11.40 21.45 0.24 -51.91 16 8 Si 0.94 44.28 29.54 68.60 2.03 46.31 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 N -0.52 -22.41 4.80 -848.46 -4.07 -26.48 16 13 C 0.02 0.76 4.88 85.99 0.42 1.18 16 14 C 0.07 2.13 6.86 71.85 0.49 2.62 16 15 O -0.39 -13.62 10.88 -148.81 -1.62 -15.24 16 16 C 0.08 2.66 3.08 31.46 0.10 2.75 16 17 H 0.07 2.32 8.12 -2.39 -0.02 2.31 16 18 C -0.11 -2.78 6.74 31.44 0.21 -2.56 16 19 C -0.11 -2.73 6.88 32.04 0.22 -2.51 16 20 C -0.11 -3.95 5.61 31.07 0.17 -3.78 16 21 C 0.05 1.95 1.60 45.84 0.07 2.02 16 22 H 0.02 0.72 6.81 -2.39 -0.02 0.71 16 23 H 0.03 1.31 6.87 -2.39 -0.02 1.29 16 24 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 3.04 6.29 -2.39 -0.02 3.03 16 26 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.02 0.99 6.19 -2.38 -0.01 0.98 16 28 H 0.08 3.11 6.63 -2.39 -0.02 3.09 16 29 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -61.25 272.07 0.65 -60.60 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.04 Total: 9.67 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 3.03 Total: -22.94 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -3.83 Total: -78.39 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.62 Total: -15.24 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -61.25 0.65 -60.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043425394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.905 kcal (2) G-P(sol) polarization free energy of solvation -61.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds