Wall clock time and date at job start Mon Mar 30 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47362 * 2 1 4 4 C 1.50696 * 109.47127 * 120.00537 * 2 1 3 5 5 H 1.08001 * 120.00223 * 119.99940 * 4 2 1 6 6 C 1.37879 * 119.99768 * 299.99805 * 4 2 1 7 7 N 1.31511 * 119.99944 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00220 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47155 * 89.99807 * 8 6 4 10 10 H 1.48498 * 109.47488 * 210.00463 * 8 6 4 11 11 H 1.48504 * 109.47006 * 330.00172 * 8 6 4 12 12 C 1.50708 * 109.46952 * 240.00217 * 2 1 3 13 13 O 1.21281 * 120.00013 * 259.83200 * 12 2 1 14 14 N 1.34770 * 119.99720 * 79.82942 * 12 2 1 15 15 C 1.44587 * 118.64230 * 184.48767 * 14 12 2 16 16 C 1.54311 * 109.90768 * 270.85762 * 15 14 12 17 17 C 1.47096 * 110.29389 * 288.75533 * 16 15 14 18 18 C 1.52569 * 114.32560 * 62.73141 * 17 16 15 19 19 C 1.50882 * 109.35961 * 274.98181 * 18 17 16 20 20 C 1.47601 * 118.64661 * 4.75387 * 14 12 2 21 21 H 1.08994 * 109.46827 * 305.16725 * 1 2 3 22 22 H 1.08995 * 109.47430 * 185.16225 * 1 2 3 23 23 H 1.09006 * 109.46888 * 65.16156 * 1 2 3 24 24 H 0.97002 * 120.00385 * 179.97438 * 7 6 4 25 25 H 1.09003 * 109.44485 * 30.76359 * 15 14 12 26 26 H 1.09002 * 109.45064 * 150.68227 * 15 14 12 27 27 H 1.09004 * 109.39970 * 168.46863 * 16 15 14 28 28 H 1.08999 * 109.14311 * 48.88043 * 16 15 14 29 29 H 1.09004 * 108.51128 * 301.48437 * 17 16 15 30 30 H 1.08999 * 108.39040 * 183.90044 * 17 16 15 31 31 H 1.09003 * 109.48775 * 155.02144 * 18 17 16 32 32 H 1.09002 * 109.49383 * 34.94836 * 18 17 16 33 33 H 1.09006 * 109.36160 * 331.69676 * 19 18 17 34 34 H 1.08998 * 109.37137 * 212.08492 * 19 18 17 35 35 H 1.08999 * 108.94958 * 258.55118 * 20 14 12 36 36 H 1.09001 * 108.95108 * 17.27161 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5564 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8724 2.6998 10 1 0.9760 1.9949 3.9068 11 1 0.8470 2.1763 1.4921 12 6 2.0324 -0.7104 -1.2306 13 8 2.4093 -1.8607 -1.1553 14 7 2.0626 -0.0674 -2.4146 15 6 2.4565 -0.8052 -3.5940 16 6 3.9867 -0.7258 -3.7768 17 6 4.3811 0.6285 -4.1939 18 6 4.0638 1.7177 -3.1738 19 6 2.6386 2.1770 -3.3594 20 6 1.6981 1.3624 -2.4529 21 1 -0.3633 0.5919 0.8401 22 1 -0.3634 -1.0234 0.0925 23 1 -0.3633 0.4317 -0.9327 24 1 1.9041 -0.5277 4.4375 25 1 2.1625 -1.8490 -3.4841 26 1 1.9647 -0.3802 -4.4691 27 1 4.2982 -1.4424 -4.5368 28 1 4.4726 -0.9681 -2.8317 29 1 3.8679 0.8669 -5.1256 30 1 5.4549 0.6317 -4.3810 31 1 4.7394 2.5606 -3.3197 32 1 4.1896 1.3205 -2.1665 33 1 2.3470 2.0383 -4.4005 34 1 2.5629 3.2336 -3.1025 35 1 0.6779 1.4577 -2.8248 36 1 1.7451 1.7669 -1.4418 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049811380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:49 Heat of formation + Delta-G solvation = -40.917655 kcal Electronic energy + Delta-G solvation = -16634.721050 eV Core-core repulsion = 14118.688999 eV Total energy + Delta-G solvation = -2516.032051 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83719 -37.08525 -34.07534 -33.31483 -32.31864 -31.05071 -26.68894 -25.25619 -25.13252 -22.85407 -20.87535 -20.29428 -18.09568 -16.89705 -16.14253 -15.82183 -15.23525 -14.66086 -14.28174 -13.77858 -13.52381 -13.19286 -13.07216 -12.72780 -12.34834 -12.25415 -11.77623 -11.54357 -11.20366 -11.01942 -10.79790 -10.58265 -10.56991 -10.47708 -10.27248 -10.20646 -9.61504 -9.05384 -8.60618 -8.53962 -8.08471 -6.03953 -4.03486 3.24683 3.30234 3.36749 3.56300 3.65437 4.38861 4.74740 4.95085 4.98675 5.17818 5.24424 5.26801 5.43504 5.59251 5.72434 5.76461 5.82667 5.89322 6.01330 6.08472 6.17483 6.20674 6.22533 6.33139 6.39857 6.43226 6.50526 6.55504 6.71857 7.19607 7.22898 7.58372 8.03154 8.56114 9.11704 9.15893 9.55307 11.09240 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.009018 C = 0.008360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.496212 B = 3104.148685 C = 3348.313407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.006 4.006 3 H 0.048 0.952 4 C -0.503 4.503 5 H 0.089 0.911 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.526 3.474 13 O -0.531 6.531 14 N -0.621 5.621 15 C 0.121 3.879 16 C -0.138 4.138 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.130 4.130 20 C 0.105 3.895 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.034 0.966 24 H 0.264 0.736 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 7.634 -15.284 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 H 0.066 0.934 4 C -0.541 4.541 5 H 0.107 0.893 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.316 3.684 13 O -0.406 6.406 14 N -0.356 5.356 15 C -0.002 4.002 16 C -0.176 4.176 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.168 4.168 20 C -0.018 4.018 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.138 6.993 -15.052 16.597 hybrid contribution -0.609 0.916 0.178 1.115 sum -0.748 7.909 -14.874 16.862 Atomic orbital electron populations 1.22066 0.97084 1.01866 0.98959 1.19364 0.93339 0.97246 0.92768 0.93440 1.20923 1.32045 1.13792 0.87335 0.89261 1.24975 0.95812 0.96608 0.95752 1.69884 1.45549 1.40183 0.97853 0.86913 0.80854 0.83820 0.76962 1.20510 1.22307 1.19292 1.21306 0.76172 0.86915 0.83980 1.90569 1.46595 1.18469 1.84921 1.47887 1.69622 1.10076 1.08017 1.21126 0.94027 0.97433 0.87660 1.21127 0.97422 0.96790 1.02304 1.20429 1.00676 0.95319 0.98494 1.21079 0.95908 0.97943 1.00753 1.21768 0.95608 0.99517 0.99901 1.22022 0.97152 0.80750 1.01860 0.93463 0.92170 0.94721 0.92591 0.90521 0.91788 0.91619 0.91230 0.92776 0.92925 0.92249 0.91024 0.91939 0.90989 0.92487 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.73 16 2 C -0.01 -0.14 1.43 -92.92 -0.13 -0.27 16 3 H 0.05 1.08 5.12 -51.93 -0.27 0.81 16 4 C -0.50 -14.69 8.93 -34.44 -0.31 -15.00 16 5 H 0.09 2.98 7.18 -52.49 -0.38 2.60 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 8 Si 0.88 21.43 24.32 -169.99 -4.13 17.30 16 9 H -0.28 -6.57 6.92 56.52 0.39 -6.18 16 10 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.27 -5.96 6.53 56.52 0.37 -5.59 16 12 C 0.53 11.82 6.76 -10.98 -0.07 11.75 16 13 O -0.53 -13.92 15.17 5.56 0.08 -13.84 16 14 N -0.62 -10.72 2.25 -172.88 -0.39 -11.11 16 15 C 0.12 1.82 5.30 -4.38 -0.02 1.79 16 16 C -0.14 -1.91 5.72 -28.88 -0.17 -2.07 16 17 C -0.11 -1.32 5.15 -29.79 -0.15 -1.47 16 18 C -0.12 -1.48 5.51 -28.02 -0.15 -1.63 16 19 C -0.13 -1.46 5.71 -27.30 -0.16 -1.62 16 20 C 0.11 1.48 5.24 -2.94 -0.02 1.47 16 21 H 0.05 1.03 3.42 -51.93 -0.18 0.85 16 22 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 23 H 0.03 0.61 7.45 -51.93 -0.39 0.22 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.08 1.27 7.37 -51.93 -0.38 0.89 16 26 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 33 H 0.06 0.63 7.32 -51.93 -0.38 0.25 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.09 1.40 5.36 -51.93 -0.28 1.12 16 LS Contribution 271.35 15.07 4.09 4.09 Total: -1.00 -32.68 271.35 -6.11 -38.80 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.57 Total: -0.27 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -0.96 Total: -7.84 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.38 Total: -38.24 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.13 Total: 17.30 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.68 -6.11 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049811380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.122 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds