Wall clock time and date at job start Mon Mar 30 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47362 * 2 1 4 4 C 1.50696 * 109.47127 * 120.00537 * 2 1 3 5 5 H 1.08001 * 120.00223 * 119.99940 * 4 2 1 6 6 C 1.37879 * 119.99768 * 299.99805 * 4 2 1 7 7 N 1.31511 * 119.99944 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00220 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47155 * 89.99807 * 8 6 4 10 10 H 1.48498 * 109.47488 * 210.00463 * 8 6 4 11 11 H 1.48504 * 109.47006 * 330.00172 * 8 6 4 12 12 C 1.50708 * 109.46952 * 240.00217 * 2 1 3 13 13 O 1.21281 * 120.00013 * 259.83200 * 12 2 1 14 14 N 1.34770 * 119.99720 * 79.82942 * 12 2 1 15 15 C 1.44587 * 118.64230 * 184.48767 * 14 12 2 16 16 C 1.54311 * 109.90768 * 270.85762 * 15 14 12 17 17 C 1.47096 * 110.29389 * 288.75533 * 16 15 14 18 18 C 1.52569 * 114.32560 * 62.73141 * 17 16 15 19 19 C 1.50882 * 109.35961 * 274.98181 * 18 17 16 20 20 C 1.47601 * 118.64661 * 4.75387 * 14 12 2 21 21 H 1.08994 * 109.46827 * 305.16725 * 1 2 3 22 22 H 1.08995 * 109.47430 * 185.16225 * 1 2 3 23 23 H 1.09006 * 109.46888 * 65.16156 * 1 2 3 24 24 H 0.97002 * 120.00385 * 179.97438 * 7 6 4 25 25 H 1.09003 * 109.44485 * 30.76359 * 15 14 12 26 26 H 1.09002 * 109.45064 * 150.68227 * 15 14 12 27 27 H 1.09004 * 109.39970 * 168.46863 * 16 15 14 28 28 H 1.08999 * 109.14311 * 48.88043 * 16 15 14 29 29 H 1.09004 * 108.51128 * 301.48437 * 17 16 15 30 30 H 1.08999 * 108.39040 * 183.90044 * 17 16 15 31 31 H 1.09003 * 109.48775 * 155.02144 * 18 17 16 32 32 H 1.09002 * 109.49383 * 34.94836 * 18 17 16 33 33 H 1.09006 * 109.36160 * 331.69676 * 19 18 17 34 34 H 1.08998 * 109.37137 * 212.08492 * 19 18 17 35 35 H 1.08999 * 108.94958 * 258.55118 * 20 14 12 36 36 H 1.09001 * 108.95108 * 17.27161 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5564 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8724 2.6998 10 1 0.9760 1.9949 3.9068 11 1 0.8470 2.1763 1.4921 12 6 2.0324 -0.7104 -1.2306 13 8 2.4093 -1.8607 -1.1553 14 7 2.0626 -0.0674 -2.4146 15 6 2.4565 -0.8052 -3.5940 16 6 3.9867 -0.7258 -3.7768 17 6 4.3811 0.6285 -4.1939 18 6 4.0638 1.7177 -3.1738 19 6 2.6386 2.1770 -3.3594 20 6 1.6981 1.3624 -2.4529 21 1 -0.3633 0.5919 0.8401 22 1 -0.3634 -1.0234 0.0925 23 1 -0.3633 0.4317 -0.9327 24 1 1.9041 -0.5277 4.4375 25 1 2.1625 -1.8490 -3.4841 26 1 1.9647 -0.3802 -4.4691 27 1 4.2982 -1.4424 -4.5368 28 1 4.4726 -0.9681 -2.8317 29 1 3.8679 0.8669 -5.1256 30 1 5.4549 0.6317 -4.3810 31 1 4.7394 2.5606 -3.3197 32 1 4.1896 1.3205 -2.1665 33 1 2.3470 2.0383 -4.4005 34 1 2.5629 3.2336 -3.1025 35 1 0.6779 1.4577 -2.8248 36 1 1.7451 1.7669 -1.4418 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049811380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:49 Heat of formation + Delta-G solvation = -63.617169 kcal Electronic energy + Delta-G solvation = -16635.705375 eV Core-core repulsion = 14118.688999 eV Total energy + Delta-G solvation = -2517.016376 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.32097 -38.48510 -35.95904 -34.77812 -33.60102 -32.92448 -27.95559 -27.18654 -26.40558 -24.48115 -22.30315 -21.29540 -19.61723 -18.86204 -17.77031 -17.35404 -16.59705 -16.44729 -15.45169 -15.16109 -15.10811 -14.71821 -14.36263 -14.21404 -13.93210 -13.68436 -13.26102 -13.11948 -12.78461 -12.49410 -12.36110 -12.12211 -11.92691 -11.59418 -11.48620 -11.45264 -11.24583 -11.14731 -10.77039 -10.34351 -9.48837 -8.28882 -6.36496 1.31948 1.38160 1.49821 1.85422 2.24453 2.33337 3.04590 3.71751 3.84992 3.99650 4.08729 4.20687 4.23118 4.32418 4.46266 4.60052 4.63102 4.72503 4.72974 4.78400 4.90173 4.93721 5.01503 5.12562 5.23770 5.29616 5.32627 5.40644 5.43627 5.51494 5.52693 5.91158 6.22719 6.53089 6.77373 7.24606 7.49133 8.89273 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.009018 C = 0.008360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.496212 B = 3104.148685 C = 3348.313407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.007 4.007 3 H 0.068 0.932 4 C -0.520 4.520 5 H 0.021 0.979 6 C 0.005 3.995 7 N -0.953 5.953 8 Si 0.959 3.041 9 H -0.262 1.262 10 H -0.296 1.296 11 H -0.226 1.226 12 C 0.519 3.481 13 O -0.588 6.588 14 N -0.606 5.606 15 C 0.116 3.884 16 C -0.132 4.132 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.121 4.121 20 C 0.092 3.908 21 H 0.050 0.950 22 H 0.039 0.961 23 H 0.081 0.919 24 H 0.268 0.732 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.021 0.979 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 11.357 -18.266 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.086 0.914 4 C -0.559 4.559 5 H 0.040 0.960 6 C -0.191 4.191 7 N -0.593 5.593 8 Si 0.783 3.217 9 H -0.188 1.188 10 H -0.224 1.224 11 H -0.149 1.149 12 C 0.309 3.691 13 O -0.468 6.468 14 N -0.339 5.339 15 C -0.007 4.007 16 C -0.171 4.171 17 C -0.148 4.148 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.029 4.029 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.040 0.960 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.963 10.757 -18.105 21.151 hybrid contribution 0.071 -0.337 1.064 1.118 sum -1.891 10.420 -17.041 20.063 Atomic orbital electron populations 1.21957 0.94617 1.01259 1.01509 1.19300 0.95231 0.97318 0.90968 0.91425 1.21073 1.31718 1.12461 0.90598 0.96032 1.26065 0.97428 1.00908 0.94691 1.70083 1.47665 1.42857 0.98744 0.85712 0.78713 0.78976 0.78277 1.18754 1.22400 1.14907 1.21181 0.76141 0.86289 0.85470 1.90544 1.49374 1.20920 1.85965 1.47863 1.67654 1.11568 1.06826 1.21360 0.95096 0.96340 0.87925 1.21093 0.96296 0.99139 1.00575 1.20427 1.01562 0.93440 0.99393 1.21121 0.97750 0.98670 0.98526 1.21771 0.93484 1.00045 1.00619 1.22392 0.99770 0.78469 1.02289 0.93140 0.94137 0.90065 0.92357 0.93010 0.87318 0.89693 0.95957 0.89687 0.92286 0.90338 0.95201 0.89304 0.88616 0.89359 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 8.52 71.98 0.61 -4.90 16 2 C -0.01 -0.32 1.43 -12.28 -0.02 -0.34 16 3 H 0.07 2.95 5.12 -2.39 -0.01 2.93 16 4 C -0.52 -32.07 8.93 25.60 0.23 -31.84 16 5 H 0.02 1.57 7.18 -2.91 -0.02 1.55 16 6 C 0.01 0.32 5.45 84.66 0.46 0.78 16 7 N -0.95 -62.31 13.96 21.45 0.30 -62.01 16 8 Si 0.96 43.47 24.32 68.60 1.67 45.14 16 9 H -0.26 -11.18 6.92 99.48 0.69 -10.49 16 10 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.23 -8.70 6.53 99.48 0.65 -8.05 16 12 C 0.52 23.91 6.76 87.66 0.59 24.50 16 13 O -0.59 -33.11 15.17 -3.03 -0.05 -33.15 16 14 N -0.61 -20.02 2.25 -819.27 -1.84 -21.86 16 15 C 0.12 3.26 5.30 87.18 0.46 3.72 16 16 C -0.13 -3.55 5.72 29.20 0.17 -3.38 16 17 C -0.11 -2.26 5.15 28.62 0.15 -2.12 16 18 C -0.12 -2.69 5.51 29.76 0.16 -2.52 16 19 C -0.12 -2.10 5.71 30.23 0.17 -1.93 16 20 C 0.09 2.21 5.24 86.49 0.45 2.66 16 21 H 0.05 2.00 3.42 -2.39 -0.01 1.99 16 22 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.08 2.51 7.45 -2.38 -0.02 2.49 16 24 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 25 H 0.05 1.73 7.37 -2.39 -0.02 1.71 16 26 H 0.11 2.13 8.06 -2.39 -0.02 2.12 16 27 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 1.28 7.36 -2.39 -0.02 1.26 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.03 0.90 7.48 -2.39 -0.02 0.88 16 33 H 0.09 1.15 7.32 -2.38 -0.02 1.13 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 36 H 0.08 2.07 5.36 -2.39 -0.01 2.05 16 Total: -1.00 -79.70 271.35 4.50 -75.20 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.98 Total: 12.05 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 3.44 Total: -15.36 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.54 Total: -83.87 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.05 Total: -33.15 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.67 Total: 45.14 kcal Total: -79.70 4.50 -75.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049811380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.584 kcal (2) G-P(sol) polarization free energy of solvation -79.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds