Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47073 * 2 1 4 4 C 1.50707 * 109.47103 * 240.00315 * 2 1 3 5 5 H 1.07996 * 119.99571 * 239.99599 * 4 2 1 6 6 C 1.37869 * 120.00256 * 60.00173 * 4 2 1 7 7 N 1.31517 * 119.99983 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47589 * 89.99263 * 8 6 4 10 10 H 1.48501 * 109.47287 * 209.99521 * 8 6 4 11 11 H 1.48509 * 109.46824 * 329.99510 * 8 6 4 12 12 C 1.50695 * 109.47239 * 120.00008 * 2 1 3 13 13 O 1.21281 * 119.99802 * 106.84909 * 12 2 1 14 14 N 1.34777 * 120.00224 * 286.84562 * 12 2 1 15 15 C 1.47606 * 118.64331 * 353.65236 * 14 12 2 16 16 C 1.53942 * 112.07689 * 137.79577 * 15 14 12 17 17 C 1.50879 * 110.09303 * 319.48334 * 16 15 14 18 18 C 1.52569 * 109.35317 * 91.88569 * 17 16 15 19 19 C 1.47095 * 114.32483 * 274.97868 * 18 17 16 20 20 C 1.44524 * 118.60913 * 173.74418 * 14 12 2 21 21 H 1.09005 * 109.47338 * 54.36002 * 1 2 3 22 22 H 1.09007 * 109.47279 * 174.35288 * 1 2 3 23 23 H 1.09000 * 109.47783 * 294.35686 * 1 2 3 24 24 H 0.96999 * 120.00077 * 180.02562 * 7 6 4 25 25 H 1.09007 * 108.94343 * 17.15326 * 15 14 12 26 26 H 1.09001 * 108.95011 * 258.44656 * 15 14 12 27 27 H 1.09004 * 109.36054 * 79.67356 * 16 15 14 28 28 H 1.08995 * 109.36757 * 199.28544 * 16 15 14 29 29 H 1.09007 * 109.48648 * 211.84516 * 17 16 15 30 30 H 1.08993 * 109.49126 * 331.91834 * 17 16 15 31 31 H 1.09004 * 108.51577 * 36.23973 * 18 17 16 32 32 H 1.09001 * 108.51131 * 153.88713 * 18 17 16 33 33 H 1.09000 * 109.32484 * 183.06416 * 19 18 17 34 34 H 1.09001 * 109.33314 * 302.54567 * 19 18 17 35 35 H 1.09002 * 109.47947 * 150.76176 * 20 14 12 36 36 H 1.08996 * 109.48358 * 30.77615 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3429 -2.1616 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 6 2.0323 -0.7104 1.2304 13 8 2.5214 -1.8161 1.1350 14 7 1.9380 -0.1170 2.4369 15 6 1.4702 1.2814 2.5030 16 6 0.4811 1.5065 3.6609 17 6 -0.4657 0.3366 3.7687 18 6 0.1050 -0.6873 4.7452 19 6 1.0587 -1.6320 4.1439 20 6 2.3013 -0.8762 3.6117 21 1 -0.3634 0.5988 -0.8352 22 1 -0.3634 -1.0227 -0.1011 23 1 -0.3635 0.4238 0.9362 24 1 0.7082 1.1610 -3.4844 25 1 0.9790 1.5350 1.5635 26 1 2.3307 1.9364 2.6401 27 1 1.0348 1.6106 4.5941 28 1 -0.0889 2.4172 3.4775 29 1 -1.4334 0.6842 4.1304 30 1 -0.5874 -0.1241 2.7884 31 1 0.6080 -0.1537 5.5516 32 1 -0.7210 -1.2570 5.1712 33 1 1.3718 -2.3563 4.8960 34 1 0.5756 -2.1572 3.3200 35 1 2.6718 -0.1994 4.3817 36 1 3.0800 -1.5941 3.3543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049811381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = -50.099272 kcal Electronic energy + Delta-G solvation = -16650.732143 eV Core-core repulsion = 14134.301947 eV Total energy + Delta-G solvation = -2516.430196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71889 -36.92867 -33.95779 -33.24698 -32.22945 -30.30090 -26.47403 -25.17607 -25.06954 -22.60258 -20.82959 -20.20022 -18.05709 -16.37782 -16.16738 -15.55273 -14.92542 -14.60785 -14.16592 -13.82190 -13.45489 -13.08613 -12.78375 -12.36711 -12.29033 -11.85577 -11.45173 -11.04770 -10.96216 -10.81414 -10.68227 -10.59709 -10.47938 -10.27331 -10.25328 -10.11315 -9.92544 -8.91368 -8.52408 -8.27333 -7.92697 -6.00362 -4.02398 3.35644 3.41162 3.47863 3.73136 3.80785 4.49382 4.83687 5.00574 5.08608 5.28143 5.33064 5.36283 5.56294 5.72267 5.84013 5.88886 5.97274 6.01855 6.13284 6.22600 6.26947 6.35492 6.45055 6.46968 6.55396 6.74211 6.89521 6.99754 7.34083 7.51103 7.78583 8.01950 8.12773 8.43766 9.05328 9.30269 9.62654 11.07693 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043364 B = 0.008085 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.538527 B = 3462.449820 C = 3768.008717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.048 0.952 4 C -0.499 4.499 5 H 0.072 0.928 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.517 3.483 13 O -0.546 6.546 14 N -0.621 5.621 15 C 0.104 3.896 16 C -0.129 4.129 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.136 4.136 20 C 0.118 3.882 21 H 0.089 0.911 22 H 0.032 0.968 23 H 0.018 0.982 24 H 0.260 0.740 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 2.396 12.938 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.422 6.422 14 N -0.356 5.356 15 C -0.019 4.019 16 C -0.167 4.167 17 C -0.158 4.158 18 C -0.149 4.149 19 C -0.175 4.175 20 C -0.006 4.006 21 H 0.108 0.892 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.155 1.917 12.754 13.076 hybrid contribution 0.215 -0.340 -0.720 0.824 sum -1.940 1.577 12.034 12.291 Atomic orbital electron populations 1.21808 0.96336 1.00836 0.99968 1.18868 0.94142 0.96663 0.89553 0.93432 1.21147 1.30964 1.12564 0.89127 0.91026 1.24936 0.95171 0.95056 0.99044 1.69880 1.37229 1.23110 1.23449 0.86472 0.79441 0.79268 0.82153 1.20691 1.21316 1.19809 1.22019 0.76225 0.86221 0.84666 1.90511 1.44189 1.21320 1.86145 1.47878 1.67874 1.13335 1.06508 1.22034 0.97093 0.82071 1.00669 1.21747 0.97537 0.98722 0.98675 1.21131 0.97778 0.95977 1.00949 1.20426 0.98593 0.97567 0.98303 1.21215 0.97334 0.98186 1.00727 1.21212 0.96491 0.95214 0.87663 0.89202 0.94852 0.96300 0.93032 0.88284 0.92791 0.92184 0.91033 0.92398 0.90662 0.92790 0.93065 0.91790 0.91630 0.91919 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.43 37.15 0.31 -2.76 16 2 C 0.03 0.73 1.76 -92.93 -0.16 0.56 16 3 H 0.05 1.22 7.01 -51.93 -0.36 0.86 16 4 C -0.50 -14.39 8.36 -34.44 -0.29 -14.67 16 5 H 0.07 2.19 6.83 -52.49 -0.36 1.83 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.28 11.38 55.43 0.63 -24.65 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.52 12.14 6.82 -10.99 -0.07 12.07 16 13 O -0.55 -14.58 14.96 5.56 0.08 -14.50 16 14 N -0.62 -11.40 2.23 -172.58 -0.38 -11.78 16 15 C 0.10 1.61 5.36 -2.95 -0.02 1.59 16 16 C -0.13 -1.57 5.71 -27.30 -0.16 -1.73 16 17 C -0.12 -1.57 5.51 -28.02 -0.15 -1.72 16 18 C -0.11 -1.36 5.15 -29.79 -0.15 -1.52 16 19 C -0.14 -1.93 5.73 -28.58 -0.16 -2.10 16 20 C 0.12 1.88 5.44 -4.11 -0.02 1.85 16 21 H 0.09 2.27 6.24 -51.93 -0.32 1.95 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.02 0.37 4.73 -51.93 -0.25 0.12 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.10 1.70 4.35 -51.92 -0.23 1.47 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.66 7.32 -51.93 -0.38 0.28 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.07 1.19 5.79 -51.93 -0.30 0.89 16 31 H 0.05 0.59 7.36 -51.93 -0.38 0.21 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 LS Contribution 273.23 15.07 4.12 4.12 Total: -1.00 -30.72 273.23 -7.02 -37.73 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.47 Total: -1.09 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -0.97 Total: -6.88 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.25 Total: -36.43 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.08 Total: -14.50 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.72 -7.02 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049811381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.366 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds