Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47073 * 2 1 4 4 C 1.50707 * 109.47103 * 240.00315 * 2 1 3 5 5 H 1.07996 * 119.99571 * 239.99599 * 4 2 1 6 6 C 1.37869 * 120.00256 * 60.00173 * 4 2 1 7 7 N 1.31517 * 119.99983 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47589 * 89.99263 * 8 6 4 10 10 H 1.48501 * 109.47287 * 209.99521 * 8 6 4 11 11 H 1.48509 * 109.46824 * 329.99510 * 8 6 4 12 12 C 1.50695 * 109.47239 * 120.00008 * 2 1 3 13 13 O 1.21281 * 119.99802 * 106.84909 * 12 2 1 14 14 N 1.34777 * 120.00224 * 286.84562 * 12 2 1 15 15 C 1.47606 * 118.64331 * 353.65236 * 14 12 2 16 16 C 1.53942 * 112.07689 * 137.79577 * 15 14 12 17 17 C 1.50879 * 110.09303 * 319.48334 * 16 15 14 18 18 C 1.52569 * 109.35317 * 91.88569 * 17 16 15 19 19 C 1.47095 * 114.32483 * 274.97868 * 18 17 16 20 20 C 1.44524 * 118.60913 * 173.74418 * 14 12 2 21 21 H 1.09005 * 109.47338 * 54.36002 * 1 2 3 22 22 H 1.09007 * 109.47279 * 174.35288 * 1 2 3 23 23 H 1.09000 * 109.47783 * 294.35686 * 1 2 3 24 24 H 0.96999 * 120.00077 * 180.02562 * 7 6 4 25 25 H 1.09007 * 108.94343 * 17.15326 * 15 14 12 26 26 H 1.09001 * 108.95011 * 258.44656 * 15 14 12 27 27 H 1.09004 * 109.36054 * 79.67356 * 16 15 14 28 28 H 1.08995 * 109.36757 * 199.28544 * 16 15 14 29 29 H 1.09007 * 109.48648 * 211.84516 * 17 16 15 30 30 H 1.08993 * 109.49126 * 331.91834 * 17 16 15 31 31 H 1.09004 * 108.51577 * 36.23973 * 18 17 16 32 32 H 1.09001 * 108.51131 * 153.88713 * 18 17 16 33 33 H 1.09000 * 109.32484 * 183.06416 * 19 18 17 34 34 H 1.09001 * 109.33314 * 302.54567 * 19 18 17 35 35 H 1.09002 * 109.47947 * 150.76176 * 20 14 12 36 36 H 1.08996 * 109.48358 * 30.77615 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3429 -2.1616 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 6 2.0323 -0.7104 1.2304 13 8 2.5214 -1.8161 1.1350 14 7 1.9380 -0.1170 2.4369 15 6 1.4702 1.2814 2.5030 16 6 0.4811 1.5065 3.6609 17 6 -0.4657 0.3366 3.7687 18 6 0.1050 -0.6873 4.7452 19 6 1.0587 -1.6320 4.1439 20 6 2.3013 -0.8762 3.6117 21 1 -0.3634 0.5988 -0.8352 22 1 -0.3634 -1.0227 -0.1011 23 1 -0.3635 0.4238 0.9362 24 1 0.7082 1.1610 -3.4844 25 1 0.9790 1.5350 1.5635 26 1 2.3307 1.9364 2.6401 27 1 1.0348 1.6106 4.5941 28 1 -0.0889 2.4172 3.4775 29 1 -1.4334 0.6842 4.1304 30 1 -0.5874 -0.1241 2.7884 31 1 0.6080 -0.1537 5.5516 32 1 -0.7210 -1.2570 5.1712 33 1 1.3718 -2.3563 4.8960 34 1 0.5756 -2.1572 3.3200 35 1 2.6718 -0.1994 4.3817 36 1 3.0800 -1.5941 3.3543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049811381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = -68.499511 kcal Electronic energy + Delta-G solvation = -16651.530037 eV Core-core repulsion = 14134.301947 eV Total energy + Delta-G solvation = -2517.228090 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.27778 -38.40350 -35.93123 -34.71502 -33.52695 -32.23074 -27.81664 -27.26645 -26.32653 -24.30032 -22.35545 -21.24646 -19.63408 -18.35787 -17.84326 -17.14330 -16.47204 -16.32083 -15.52000 -15.27680 -14.96964 -14.53506 -14.15702 -14.08116 -13.70602 -13.30463 -13.04678 -12.93915 -12.65988 -12.60285 -12.28567 -12.25205 -12.02921 -11.81183 -11.52342 -11.38554 -11.23485 -11.01835 -10.59036 -10.21281 -9.43625 -8.16302 -6.25971 1.38740 1.39545 1.51313 1.92204 2.27329 2.46869 3.13130 3.75515 3.91608 4.04526 4.10042 4.24091 4.33868 4.48652 4.61983 4.69036 4.75903 4.76950 4.89513 4.96753 5.01849 5.02594 5.11920 5.26657 5.31145 5.34756 5.42332 5.46640 5.55860 5.72271 5.83907 6.01742 6.19235 6.59812 6.81503 7.39490 7.54199 8.89991 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043364 B = 0.008085 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.538527 B = 3462.449820 C = 3768.008717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.027 3.973 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.279 1.279 12 C 0.513 3.487 13 O -0.591 6.591 14 N -0.608 5.608 15 C 0.095 3.905 16 C -0.119 4.119 17 C -0.124 4.124 18 C -0.111 4.111 19 C -0.129 4.129 20 C 0.112 3.888 21 H 0.071 0.929 22 H 0.013 0.987 23 H 0.053 0.947 24 H 0.265 0.735 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.101 0.899 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.868 3.623 14.765 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.006 3.994 3 H 0.058 0.942 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.204 1.204 12 C 0.304 3.696 13 O -0.471 6.471 14 N -0.341 5.341 15 C -0.027 4.027 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.148 4.148 19 C -0.167 4.167 20 C -0.011 4.011 21 H 0.089 0.911 22 H 0.032 0.968 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.119 0.881 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.686 3.190 14.620 15.203 hybrid contribution 0.376 -0.683 -1.238 1.463 sum -2.310 2.507 13.382 13.809 Atomic orbital electron populations 1.21582 0.95173 0.99375 1.00998 1.18770 0.95036 0.95873 0.89692 0.94160 1.21285 1.31793 1.12524 0.91386 0.93842 1.25580 0.95199 0.95742 1.01322 1.69948 1.37119 1.23457 1.24322 0.85615 0.78584 0.78592 0.79210 1.20138 1.19627 1.20434 1.21681 0.76247 0.85646 0.85995 1.90478 1.46491 1.23117 1.87052 1.47830 1.66208 1.14409 1.05627 1.22290 0.98673 0.80217 1.01489 1.21739 0.96774 0.99181 0.98003 1.21165 0.99305 0.96321 0.99349 1.20420 0.98603 0.97266 0.98505 1.21171 0.96756 0.98799 0.99993 1.21468 0.96876 0.95498 0.87271 0.91055 0.96778 0.92837 0.92543 0.90447 0.91025 0.89652 0.88966 0.90243 0.94240 0.90113 0.91851 0.89593 0.95440 0.88070 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.43 8.43 71.98 0.61 -4.82 16 2 C 0.03 1.43 1.76 -12.29 -0.02 1.41 16 3 H 0.04 2.13 7.01 -2.39 -0.02 2.12 16 4 C -0.53 -31.81 8.36 25.60 0.21 -31.59 16 5 H 0.04 2.79 6.83 -2.91 -0.02 2.77 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -51.63 11.38 21.44 0.24 -51.38 16 8 Si 0.95 45.82 29.54 68.60 2.03 47.84 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 12 C 0.51 24.87 6.82 87.66 0.60 25.47 16 13 O -0.59 -33.16 14.96 -3.03 -0.05 -33.21 16 14 N -0.61 -22.00 2.23 -818.30 -1.82 -23.82 16 15 C 0.09 2.75 5.36 86.49 0.46 3.21 16 16 C -0.12 -2.43 5.71 30.22 0.17 -2.26 16 17 C -0.12 -2.82 5.51 29.76 0.16 -2.66 16 18 C -0.11 -2.31 5.15 28.62 0.15 -2.16 16 19 C -0.13 -3.45 5.73 29.40 0.17 -3.28 16 20 C 0.11 3.38 5.44 87.39 0.47 3.86 16 21 H 0.07 3.67 6.24 -2.38 -0.01 3.65 16 22 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 23 H 0.05 2.13 4.73 -2.39 -0.01 2.12 16 24 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.08 2.59 4.35 -2.38 -0.01 2.58 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 1.38 7.32 -2.38 -0.02 1.36 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.04 1.19 5.79 -2.39 -0.01 1.18 16 31 H 0.08 1.31 7.36 -2.39 -0.02 1.30 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.03 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.10 2.30 8.07 -2.39 -0.02 2.28 16 36 H 0.05 1.88 7.22 -2.39 -0.02 1.87 16 Total: -1.00 -69.16 273.23 4.90 -64.27 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.06 Total: 7.48 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 3.44 Total: -11.18 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -1.58 Total: -75.21 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.05 Total: -33.21 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.16 4.90 -64.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049811381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.231 kcal (2) G-P(sol) polarization free energy of solvation -69.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds