Wall clock time and date at job start Mon Mar 30 2020 03:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20757 * 120.00378 * 2 1 4 4 C 1.50694 * 119.99833 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47510 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47614 * 180.02562 * 5 4 2 7 7 N 1.46898 * 109.47097 * 180.02562 * 6 5 4 8 8 C 1.46901 * 110.99819 * 189.99918 * 7 6 5 9 9 C 1.50703 * 109.46845 * 161.83123 * 8 7 6 10 10 H 1.07994 * 120.00217 * 354.37366 * 9 8 7 11 11 C 1.37880 * 119.99625 * 174.36548 * 9 8 7 12 12 N 1.31514 * 120.00199 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99885 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47447 * 59.99859 * 13 11 9 15 15 H 1.48502 * 109.47325 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47014 * 300.00073 * 13 11 9 17 17 C 1.46897 * 111.00043 * 66.04892 * 7 6 5 18 18 C 1.53010 * 117.49527 * 261.90852 * 17 7 6 19 19 C 1.53006 * 117.49451 * 193.25369 * 17 7 6 20 20 H 1.09001 * 109.47049 * 240.00139 * 1 2 3 21 21 H 1.09006 * 109.46761 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47402 * 119.99504 * 1 2 3 23 23 H 1.09002 * 109.47360 * 59.99891 * 4 2 1 24 24 H 1.09005 * 109.47498 * 299.99739 * 4 2 1 25 25 H 1.09002 * 109.46738 * 59.99706 * 5 4 2 26 26 H 1.08996 * 109.46673 * 300.00655 * 5 4 2 27 27 H 1.09004 * 109.47013 * 300.00292 * 6 5 4 28 28 H 1.09002 * 109.47339 * 60.00036 * 6 5 4 29 29 H 1.08994 * 109.47496 * 281.83550 * 8 7 6 30 30 H 1.09003 * 109.47416 * 41.83693 * 8 7 6 31 31 H 0.97004 * 120.00219 * 180.02562 * 12 11 9 32 32 H 1.08992 * 115.55133 * 47.57934 * 17 7 6 33 33 H 1.08998 * 117.49436 * 0.02562 * 18 17 7 34 34 H 1.08993 * 117.49466 * 145.02300 * 18 17 7 35 35 H 1.09004 * 117.49566 * 214.97626 * 19 17 7 36 36 H 1.08998 * 117.50007 * 359.97238 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2604 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5297 -2.3506 -0.0023 7 7 5.9740 -2.0822 -0.0022 8 6 6.7383 -3.3137 -0.2415 9 6 8.1376 -2.9601 -0.6751 10 1 8.4037 -1.9285 -0.8518 11 6 9.0781 -3.9537 -0.8458 12 7 8.7539 -5.2101 -0.6309 13 14 10.8128 -3.5155 -1.3825 14 1 11.4271 -2.6086 -0.3797 15 1 11.6246 -4.7541 -1.4934 16 1 10.7659 -2.8353 -2.7018 17 6 6.3899 -1.4398 1.2516 18 6 6.5459 0.0824 1.2476 19 6 7.7856 -0.8144 1.2957 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5137 -0.8900 23 1 1.9971 -1.8763 -0.8908 24 1 1.9972 -1.8771 0.8892 25 1 4.0284 -0.4542 0.8889 26 1 4.0277 -0.4538 -0.8910 27 1 4.2667 -2.9228 0.8874 28 1 4.2660 -2.9216 -0.8926 29 1 6.7795 -3.8999 0.6764 30 1 6.2521 -3.8969 -1.0236 31 1 9.4157 -5.9091 -0.7507 32 1 6.0178 -1.9051 2.1643 33 1 6.3395 0.6069 0.3147 34 1 6.2768 0.6182 2.1578 35 1 8.3316 -0.8680 2.2377 36 1 8.3953 -0.8800 0.3946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050146508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:53 Heat of formation + Delta-G solvation = -17.547635 kcal Electronic energy + Delta-G solvation = -15526.766882 eV Core-core repulsion = 13011.748232 eV Total energy + Delta-G solvation = -2515.018651 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.46592 -37.72778 -34.23978 -33.08186 -31.79920 -30.26800 -27.36091 -25.00033 -22.20313 -21.52769 -21.34619 -19.54118 -19.24124 -16.53498 -15.82890 -15.68047 -15.05008 -14.75888 -14.63412 -14.47613 -13.53149 -13.36501 -12.73732 -12.37584 -12.33394 -12.02315 -11.70769 -11.53592 -11.38378 -10.97958 -10.77437 -10.65869 -10.63808 -10.34887 -9.88828 -9.60324 -9.45294 -9.06174 -9.02275 -8.35723 -7.23133 -5.97481 -3.97091 1.96608 3.36317 3.40105 3.43159 4.02819 4.45561 4.67292 4.82571 4.91714 5.10931 5.17539 5.29372 5.35089 5.39187 5.64466 5.73864 5.79605 5.83140 5.86542 6.01329 6.16614 6.22646 6.29972 6.43710 6.59172 6.72482 6.80431 7.09207 7.26768 7.43231 7.52278 7.90997 8.16746 8.26599 8.60793 9.09145 9.65454 11.13269 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043076 B = 0.005668 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.863313 B = 4938.490259 C = 5291.621118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.351 3.649 3 O -0.456 6.456 4 C -0.172 4.172 5 C -0.105 4.105 6 C 0.061 3.939 7 N -0.512 5.512 8 C 0.195 3.805 9 C -0.498 4.498 10 H 0.068 0.932 11 C 0.054 3.946 12 N -0.902 5.902 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.027 3.973 18 C -0.184 4.184 19 C -0.158 4.158 20 H 0.089 0.911 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.020 0.980 28 H 0.067 0.933 29 H -0.004 1.004 30 H 0.024 0.976 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.423 6.599 2.860 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.226 3.774 3 O -0.330 6.330 4 C -0.210 4.210 5 C -0.143 4.143 6 C -0.068 4.068 7 N -0.236 5.236 8 C 0.071 3.929 9 C -0.537 4.537 10 H 0.086 0.914 11 C -0.147 4.147 12 N -0.542 5.542 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.082 4.082 18 C -0.222 4.222 19 C -0.195 4.195 20 H 0.108 0.892 21 H 0.096 0.904 22 H 0.109 0.891 23 H 0.115 0.885 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.014 0.986 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.913 7.276 2.463 15.025 hybrid contribution 0.649 -0.721 0.426 1.059 sum -12.265 6.554 2.888 14.203 Atomic orbital electron populations 1.22342 0.95018 1.04583 1.04361 1.24693 0.91687 0.90693 0.70296 1.90419 1.72037 1.35228 1.35270 1.22142 0.97630 0.96915 1.04354 1.21410 0.90917 0.98324 1.03678 1.22013 0.89712 0.95338 0.99737 1.61883 1.01944 1.29283 1.30513 1.19707 0.92915 0.84813 0.95503 1.21229 0.94570 0.93597 1.44266 0.91409 1.24977 0.98836 0.94958 0.95928 1.69949 1.34686 0.99430 1.50142 0.86622 0.84349 0.77556 0.79274 1.20212 1.21459 1.20239 1.22023 1.01014 0.93356 0.91818 1.23033 1.04246 0.93161 1.01735 1.23162 0.90964 1.01848 1.03480 0.89201 0.90376 0.89119 0.88512 0.88782 0.91355 0.91044 0.96178 0.91452 0.98565 0.95793 0.93014 0.91612 0.88946 0.90411 0.90328 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.50 10.26 36.01 0.37 -1.14 16 2 C 0.35 3.99 7.27 -29.04 -0.21 3.77 16 3 O -0.46 -7.14 16.71 6.00 0.10 -7.04 16 4 C -0.17 -1.90 5.64 -27.88 -0.16 -2.06 16 5 C -0.11 -1.61 4.33 -26.73 -0.12 -1.73 16 6 C 0.06 1.08 4.95 -3.83 -0.02 1.06 16 7 N -0.51 -11.21 4.58 -228.08 -1.05 -12.26 16 8 C 0.20 5.11 4.75 -4.97 -0.02 5.08 16 9 C -0.50 -13.88 7.82 -34.44 -0.27 -14.14 16 10 H 0.07 1.87 5.55 -52.49 -0.29 1.58 16 11 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 12 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 13 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.03 0.55 4.20 -67.71 -0.28 0.27 16 18 C -0.18 -3.29 9.31 -26.69 -0.25 -3.53 16 19 C -0.16 -3.16 9.41 -26.69 -0.25 -3.41 16 20 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 22 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.12 6.57 -51.93 -0.34 0.78 16 26 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.07 1.19 7.84 -51.93 -0.41 0.78 16 29 H 0.00 -0.10 8.02 -51.93 -0.42 -0.52 16 30 H 0.02 0.66 7.77 -51.93 -0.40 0.26 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.12 2.64 5.32 -51.93 -0.28 2.36 16 LS Contribution 297.66 15.07 4.49 4.49 Total: -1.00 -31.43 297.66 -7.97 -39.40 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.92 Total: -0.76 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.31 Total: -14.40 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.31 Total: -38.38 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: 0.10 Total: -7.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.43 -7.97 -39.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050146508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.854 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds