Wall clock time and date at job start Mon Mar 30 2020 03:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20757 * 120.00378 * 2 1 4 4 C 1.50694 * 119.99833 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47510 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47614 * 180.02562 * 5 4 2 7 7 N 1.46898 * 109.47097 * 180.02562 * 6 5 4 8 8 C 1.46901 * 110.99819 * 189.99918 * 7 6 5 9 9 C 1.50703 * 109.46845 * 161.83123 * 8 7 6 10 10 H 1.07994 * 120.00217 * 354.37366 * 9 8 7 11 11 C 1.37880 * 119.99625 * 174.36548 * 9 8 7 12 12 N 1.31514 * 120.00199 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99885 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47447 * 59.99859 * 13 11 9 15 15 H 1.48502 * 109.47325 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47014 * 300.00073 * 13 11 9 17 17 C 1.46897 * 111.00043 * 66.04892 * 7 6 5 18 18 C 1.53010 * 117.49527 * 261.90852 * 17 7 6 19 19 C 1.53006 * 117.49451 * 193.25369 * 17 7 6 20 20 H 1.09001 * 109.47049 * 240.00139 * 1 2 3 21 21 H 1.09006 * 109.46761 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47402 * 119.99504 * 1 2 3 23 23 H 1.09002 * 109.47360 * 59.99891 * 4 2 1 24 24 H 1.09005 * 109.47498 * 299.99739 * 4 2 1 25 25 H 1.09002 * 109.46738 * 59.99706 * 5 4 2 26 26 H 1.08996 * 109.46673 * 300.00655 * 5 4 2 27 27 H 1.09004 * 109.47013 * 300.00292 * 6 5 4 28 28 H 1.09002 * 109.47339 * 60.00036 * 6 5 4 29 29 H 1.08994 * 109.47496 * 281.83550 * 8 7 6 30 30 H 1.09003 * 109.47416 * 41.83693 * 8 7 6 31 31 H 0.97004 * 120.00219 * 180.02562 * 12 11 9 32 32 H 1.08992 * 115.55133 * 47.57934 * 17 7 6 33 33 H 1.08998 * 117.49436 * 0.02562 * 18 17 7 34 34 H 1.08993 * 117.49466 * 145.02300 * 18 17 7 35 35 H 1.09004 * 117.49566 * 214.97626 * 19 17 7 36 36 H 1.08998 * 117.50007 * 359.97238 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2604 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5297 -2.3506 -0.0023 7 7 5.9740 -2.0822 -0.0022 8 6 6.7383 -3.3137 -0.2415 9 6 8.1376 -2.9601 -0.6751 10 1 8.4037 -1.9285 -0.8518 11 6 9.0781 -3.9537 -0.8458 12 7 8.7539 -5.2101 -0.6309 13 14 10.8128 -3.5155 -1.3825 14 1 11.4271 -2.6086 -0.3797 15 1 11.6246 -4.7541 -1.4934 16 1 10.7659 -2.8353 -2.7018 17 6 6.3899 -1.4398 1.2516 18 6 6.5459 0.0824 1.2476 19 6 7.7856 -0.8144 1.2957 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5137 -0.8900 23 1 1.9971 -1.8763 -0.8908 24 1 1.9972 -1.8771 0.8892 25 1 4.0284 -0.4542 0.8889 26 1 4.0277 -0.4538 -0.8910 27 1 4.2667 -2.9228 0.8874 28 1 4.2660 -2.9216 -0.8926 29 1 6.7795 -3.8999 0.6764 30 1 6.2521 -3.8969 -1.0236 31 1 9.4157 -5.9091 -0.7507 32 1 6.0178 -1.9051 2.1643 33 1 6.3395 0.6069 0.3147 34 1 6.2768 0.6182 2.1578 35 1 8.3316 -0.8680 2.2377 36 1 8.3953 -0.8800 0.3946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050146508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:52 Heat of formation + Delta-G solvation = -37.645152 kcal Electronic energy + Delta-G solvation = -15527.638376 eV Core-core repulsion = 13011.748232 eV Total energy + Delta-G solvation = -2515.890144 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46489 -39.34123 -35.66570 -35.03263 -33.35227 -31.21049 -29.09550 -26.48421 -24.13935 -23.07500 -22.73625 -21.00779 -20.34275 -18.56329 -16.91206 -16.87399 -16.65549 -16.20945 -16.00917 -15.90321 -15.03570 -14.70870 -14.44235 -13.85456 -13.48257 -13.17619 -13.04712 -12.98069 -12.81731 -12.62792 -12.44229 -12.41537 -12.13071 -11.75213 -11.70414 -11.21708 -10.98124 -10.73912 -10.51369 -10.47199 -9.01205 -8.15118 -6.22494 1.10944 1.41859 1.44374 1.51804 2.42352 3.01151 3.13826 3.17923 3.38195 4.06685 4.11925 4.17643 4.18141 4.27679 4.49438 4.50536 4.63963 4.72423 4.75494 4.83279 4.84547 4.88350 4.95107 5.11339 5.18700 5.28903 5.29592 5.34773 5.42303 5.49637 5.78729 6.12676 6.42964 6.67579 6.69404 6.92177 7.45156 8.95463 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043076 B = 0.005668 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.863313 B = 4938.490259 C = 5291.621118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.354 3.646 3 O -0.509 6.509 4 C -0.170 4.170 5 C -0.093 4.093 6 C 0.060 3.940 7 N -0.523 5.523 8 C 0.210 3.790 9 C -0.509 4.509 10 H 0.068 0.932 11 C 0.002 3.998 12 N -0.938 5.938 13 Si 0.961 3.039 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.008 3.992 18 C -0.149 4.149 19 C -0.171 4.171 20 H 0.115 0.885 21 H 0.073 0.927 22 H 0.114 0.886 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.027 0.973 28 H 0.066 0.934 29 H -0.034 1.034 30 H 0.001 0.999 31 H 0.262 0.738 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.437 7.390 3.232 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.233 3.767 3 O -0.386 6.386 4 C -0.207 4.207 5 C -0.132 4.132 6 C -0.068 4.068 7 N -0.247 5.247 8 C 0.084 3.916 9 C -0.547 4.547 10 H 0.086 0.914 11 C -0.196 4.196 12 N -0.579 5.579 13 Si 0.786 3.214 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.101 4.101 18 C -0.187 4.187 19 C -0.208 4.208 20 H 0.133 0.867 21 H 0.092 0.908 22 H 0.132 0.868 23 H 0.136 0.864 24 H 0.137 0.863 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.084 0.916 29 H -0.017 1.017 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.956 8.074 2.837 16.371 hybrid contribution 0.904 -0.986 0.323 1.376 sum -13.052 7.089 3.160 15.185 Atomic orbital electron populations 1.22328 0.91379 1.05147 1.06606 1.25221 0.93639 0.89668 0.68152 1.90418 1.73361 1.36753 1.38091 1.22172 0.94261 0.97684 1.06610 1.21231 0.93805 0.96045 1.02074 1.22113 0.87647 0.97088 0.99968 1.61821 1.03853 1.27054 1.31956 1.19364 0.93040 0.86006 0.93141 1.21531 0.95521 0.93681 1.43951 0.91377 1.25830 1.03060 0.94764 0.95903 1.70077 1.36108 1.00460 1.51246 0.85562 0.79266 0.77473 0.79111 1.19194 1.21037 1.19577 1.22147 1.01606 0.95133 0.91243 1.23003 1.01408 0.91437 1.02804 1.23120 0.91156 1.03440 1.03073 0.86695 0.90755 0.86783 0.86372 0.86295 0.92390 0.93206 0.95447 0.91573 1.01661 0.98066 0.92921 0.91132 0.89598 0.87322 0.88739 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.24 10.26 71.24 0.73 -1.51 16 2 C 0.35 7.33 7.27 29.10 0.21 7.54 16 3 O -0.51 -15.63 16.71 -1.44 -0.02 -15.65 16 4 C -0.17 -3.34 5.64 29.85 0.17 -3.18 16 5 C -0.09 -2.79 4.33 30.59 0.13 -2.66 16 6 C 0.06 2.13 4.95 86.30 0.43 2.56 16 7 N -0.52 -23.24 4.58 -875.51 -4.01 -27.25 16 8 C 0.21 11.36 4.75 85.56 0.41 11.77 16 9 C -0.51 -28.90 7.82 25.60 0.20 -28.70 16 10 H 0.07 3.81 5.55 -2.91 -0.02 3.79 16 11 C 0.00 0.10 5.46 84.66 0.46 0.56 16 12 N -0.94 -56.87 13.29 21.45 0.28 -56.58 16 13 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 17 C 0.01 0.31 4.20 44.92 0.19 0.50 16 18 C -0.15 -5.11 9.31 30.62 0.29 -4.82 16 19 C -0.17 -6.77 9.41 30.62 0.29 -6.48 16 20 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 21 H 0.07 0.94 8.12 -2.38 -0.02 0.93 16 22 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.06 1.84 6.57 -2.39 -0.02 1.83 16 26 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 27 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 28 H 0.07 2.34 7.84 -2.39 -0.02 2.32 16 29 H -0.03 -2.03 8.02 -2.39 -0.02 -2.05 16 30 H 0.00 0.07 7.77 -2.39 -0.02 0.06 16 31 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.09 3.08 8.14 -2.39 -0.02 3.07 16 34 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.09 4.13 5.32 -2.39 -0.01 4.12 16 Total: -1.00 -69.73 297.66 2.81 -66.92 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.04 Total: 10.17 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 3.50 Total: -24.42 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -3.73 Total: -83.84 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.02 Total: -15.65 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.73 2.81 -66.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050146508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.278 kcal (2) G-P(sol) polarization free energy of solvation -69.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds