Wall clock time and date at job start Mon Mar 30 2020 03:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99903 * 2 1 4 4 C 1.50702 * 109.47267 * 297.61684 * 3 2 1 5 5 H 1.08004 * 119.99908 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00174 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99726 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99989 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46870 * 269.99691 * 8 6 4 10 10 H 1.48490 * 109.47194 * 30.00047 * 8 6 4 11 11 H 1.48504 * 109.46640 * 150.00073 * 8 6 4 12 12 C 1.46899 * 110.99953 * 123.95524 * 2 1 3 13 13 H 1.08997 * 109.44134 * 297.21435 * 12 2 1 14 14 C 1.55004 * 109.43649 * 177.29010 * 12 2 1 15 15 C 1.47201 * 109.94419 * 170.26635 * 14 12 2 16 16 C 1.52205 * 114.84209 * 63.37182 * 15 14 12 17 17 C 1.50994 * 109.23868 * 272.20723 * 16 15 14 18 18 C 1.54049 * 109.49315 * 93.65183 * 17 16 15 19 19 C 1.48981 * 109.44093 * 57.11368 * 12 2 1 20 20 O 1.20756 * 118.65956 * 29.44378 * 19 12 2 21 21 H 1.08996 * 109.47380 * 58.10724 * 1 2 3 22 22 H 1.09000 * 109.47160 * 178.11101 * 1 2 3 23 23 H 1.09002 * 109.47172 * 298.10775 * 1 2 3 24 24 H 1.08994 * 109.46982 * 177.61353 * 3 2 1 25 25 H 1.09006 * 109.47024 * 57.61137 * 3 2 1 26 26 H 0.97000 * 119.99888 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.38940 * 290.41005 * 14 12 2 28 28 H 1.08995 * 109.39585 * 50.11934 * 14 12 2 29 29 H 1.09002 * 108.40536 * 184.75721 * 15 14 12 30 30 H 1.08994 * 108.41228 * 302.15073 * 15 14 12 31 31 H 1.09005 * 109.51167 * 32.13811 * 16 15 14 32 32 H 1.08994 * 109.51074 * 152.27905 * 16 15 14 33 33 H 1.09000 * 109.46663 * 213.65278 * 17 16 15 34 34 H 1.09002 * 109.46786 * 333.64357 * 17 16 15 35 35 H 1.08994 * 109.06004 * 80.46322 * 18 17 16 36 36 H 1.09004 * 109.05333 * 199.37935 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5606 2.0765 -1.2589 5 1 0.9542 1.5575 -1.9865 6 6 1.9378 3.3837 -1.4824 7 7 2.6766 4.0155 -0.5966 8 14 1.3993 4.2573 -3.0433 9 1 2.4148 4.0438 -4.1055 10 1 0.0928 3.7114 -3.4905 11 1 1.2624 5.7114 -2.7745 12 6 1.9955 -0.7660 1.1376 13 1 1.6866 -0.2911 2.0687 14 6 3.5434 -0.8000 1.0644 15 6 4.0928 -1.3586 2.3106 16 6 3.7097 -2.8056 2.5862 17 6 2.3999 -2.8392 3.3367 18 6 1.2382 -2.9922 2.3366 19 6 1.4610 -2.1558 1.0894 20 8 1.1941 -2.6367 0.0143 21 1 -0.3634 0.5429 -0.8725 22 1 -0.3633 -1.0271 -0.0339 23 1 -0.3634 0.4842 0.9065 24 1 3.0842 1.3427 0.0428 25 1 1.6117 1.9079 0.8678 26 1 2.9417 4.9352 -0.7537 27 1 3.8523 -1.4200 0.2228 28 1 3.9215 0.2126 0.9241 29 1 5.1800 -1.2926 2.2673 30 1 3.7452 -0.7482 3.1440 31 1 3.6022 -3.3399 1.6422 32 1 4.4858 -3.2795 3.1871 33 1 2.3983 -3.6827 4.0270 34 1 2.2779 -1.9117 3.8961 35 1 1.1501 -4.0404 2.0511 36 1 0.3118 -2.6761 2.8162 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062749559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:54 Heat of formation + Delta-G solvation = -39.639530 kcal Electronic energy + Delta-G solvation = -16326.358898 eV Core-core repulsion = 13810.382271 eV Total energy + Delta-G solvation = -2515.976627 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08199 -36.66198 -35.89912 -32.62036 -31.88578 -29.30365 -27.32415 -25.39972 -24.02695 -23.00629 -20.83748 -20.12821 -18.27786 -16.55413 -16.11447 -15.48728 -14.86302 -14.57398 -14.40136 -13.83466 -13.64040 -13.58727 -12.96895 -12.80994 -12.41671 -11.95112 -11.79352 -11.42243 -11.08621 -10.90958 -10.86275 -10.77288 -10.69003 -10.50284 -10.22108 -10.18860 -9.94772 -9.17600 -8.90138 -8.40825 -7.21574 -6.02882 -4.03186 2.34761 3.33577 3.39164 3.43521 4.19558 4.46346 4.70200 4.85444 4.88482 5.06809 5.20408 5.22577 5.33587 5.53403 5.65886 5.72337 5.76190 5.92306 5.97017 6.06091 6.16824 6.18352 6.25988 6.28655 6.35805 6.54462 6.64536 6.79580 7.26713 7.32387 7.77872 7.90376 8.11043 8.19370 8.54897 9.04290 9.60664 11.08196 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043431 B = 0.007137 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.550674 B = 3922.028614 C = 4307.624970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.524 5.524 3 C 0.190 3.810 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.287 1.287 12 C 0.042 3.958 13 H 0.050 0.950 14 C -0.105 4.105 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.112 4.112 18 C -0.168 4.168 19 C 0.363 3.637 20 O -0.443 6.443 21 H 0.079 0.921 22 H 0.046 0.954 23 H 0.009 0.991 24 H 0.039 0.961 25 H -0.010 1.010 26 H 0.261 0.739 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -11.360 9.057 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.249 5.249 3 C 0.066 3.934 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.213 1.213 12 C -0.068 4.068 13 H 0.068 0.932 14 C -0.142 4.142 15 C -0.160 4.160 16 C -0.164 4.164 17 C -0.150 4.150 18 C -0.207 4.207 19 C 0.237 3.763 20 O -0.314 6.314 21 H 0.098 0.902 22 H 0.065 0.935 23 H 0.028 0.972 24 H 0.057 0.943 25 H 0.008 0.992 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.517 -11.665 8.070 14.194 hybrid contribution -0.563 1.061 0.072 1.203 sum -0.046 -10.604 8.142 13.369 Atomic orbital electron populations 1.22285 0.88654 0.99700 1.00860 1.62015 1.06985 1.17584 1.38291 1.19854 0.96049 0.81015 0.96509 1.21183 1.32345 0.96477 1.04572 0.91792 1.24972 0.95297 0.97392 0.96904 1.69955 1.37095 1.11833 1.35031 0.86486 0.79108 0.78479 0.83290 1.20592 1.19863 1.21334 1.22059 0.96733 0.93069 0.94976 0.93241 1.20879 0.91989 1.03672 0.97671 1.20516 1.01110 0.95581 0.98814 1.21232 0.97107 0.97413 1.00651 1.21434 0.93744 1.02643 0.97140 1.22616 1.00509 1.01089 0.96438 1.24541 0.72965 0.89249 0.89550 1.90366 1.37568 1.71604 1.31848 0.90247 0.93479 0.97231 0.94283 0.99209 0.92945 0.91307 0.88994 0.91926 0.91916 0.91748 0.91555 0.91341 0.91042 0.89760 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 8.95 60.07 0.54 1.25 16 2 N -0.52 -11.92 4.34 -237.44 -1.03 -12.95 16 3 C 0.19 4.97 4.50 -4.98 -0.02 4.95 16 4 C -0.51 -14.47 8.46 -34.44 -0.29 -14.76 16 5 H 0.06 1.83 6.85 -52.48 -0.36 1.47 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.04 0.76 1.72 -68.63 -0.12 0.65 16 13 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 14 C -0.10 -1.76 4.92 -28.46 -0.14 -1.90 16 15 C -0.12 -1.56 5.11 -29.92 -0.15 -1.71 16 16 C -0.13 -1.39 5.49 -28.14 -0.15 -1.54 16 17 C -0.11 -1.12 5.80 -27.19 -0.16 -1.28 16 18 C -0.17 -2.01 6.00 -26.79 -0.16 -2.18 16 19 C 0.36 6.08 3.97 -29.31 -0.12 5.96 16 20 O -0.44 -8.95 15.96 6.00 0.10 -8.86 16 21 H 0.08 1.79 6.56 -51.93 -0.34 1.45 16 22 H 0.05 0.93 6.15 -51.93 -0.32 0.61 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.04 1.06 5.76 -51.93 -0.30 0.76 16 25 H -0.01 -0.27 8.14 -51.93 -0.42 -0.70 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.07 1.22 8.12 -51.93 -0.42 0.79 16 28 H 0.09 1.73 5.81 -51.93 -0.30 1.43 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.76 7.24 -51.93 -0.38 0.39 16 31 H 0.06 0.80 7.07 -51.93 -0.37 0.43 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.70 7.24 -51.93 -0.38 0.32 16 35 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 279.03 15.07 4.20 4.20 Total: -1.00 -31.34 279.03 -7.56 -38.90 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.67 Total: -3.22 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.87 Total: -9.07 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.29 Total: -38.83 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.10 Total: -8.86 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.34 -7.56 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062749559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.740 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds