Wall clock time and date at job start Mon Mar 30 2020 03:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99903 * 2 1 4 4 C 1.50702 * 109.47267 * 297.61684 * 3 2 1 5 5 H 1.08004 * 119.99908 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00174 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99726 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99989 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46870 * 269.99691 * 8 6 4 10 10 H 1.48490 * 109.47194 * 30.00047 * 8 6 4 11 11 H 1.48504 * 109.46640 * 150.00073 * 8 6 4 12 12 C 1.46899 * 110.99953 * 123.95524 * 2 1 3 13 13 H 1.08997 * 109.44134 * 297.21435 * 12 2 1 14 14 C 1.55004 * 109.43649 * 177.29010 * 12 2 1 15 15 C 1.47201 * 109.94419 * 170.26635 * 14 12 2 16 16 C 1.52205 * 114.84209 * 63.37182 * 15 14 12 17 17 C 1.50994 * 109.23868 * 272.20723 * 16 15 14 18 18 C 1.54049 * 109.49315 * 93.65183 * 17 16 15 19 19 C 1.48981 * 109.44093 * 57.11368 * 12 2 1 20 20 O 1.20756 * 118.65956 * 29.44378 * 19 12 2 21 21 H 1.08996 * 109.47380 * 58.10724 * 1 2 3 22 22 H 1.09000 * 109.47160 * 178.11101 * 1 2 3 23 23 H 1.09002 * 109.47172 * 298.10775 * 1 2 3 24 24 H 1.08994 * 109.46982 * 177.61353 * 3 2 1 25 25 H 1.09006 * 109.47024 * 57.61137 * 3 2 1 26 26 H 0.97000 * 119.99888 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.38940 * 290.41005 * 14 12 2 28 28 H 1.08995 * 109.39585 * 50.11934 * 14 12 2 29 29 H 1.09002 * 108.40536 * 184.75721 * 15 14 12 30 30 H 1.08994 * 108.41228 * 302.15073 * 15 14 12 31 31 H 1.09005 * 109.51167 * 32.13811 * 16 15 14 32 32 H 1.08994 * 109.51074 * 152.27905 * 16 15 14 33 33 H 1.09000 * 109.46663 * 213.65278 * 17 16 15 34 34 H 1.09002 * 109.46786 * 333.64357 * 17 16 15 35 35 H 1.08994 * 109.06004 * 80.46322 * 18 17 16 36 36 H 1.09004 * 109.05333 * 199.37935 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5606 2.0765 -1.2589 5 1 0.9542 1.5575 -1.9865 6 6 1.9378 3.3837 -1.4824 7 7 2.6766 4.0155 -0.5966 8 14 1.3993 4.2573 -3.0433 9 1 2.4148 4.0438 -4.1055 10 1 0.0928 3.7114 -3.4905 11 1 1.2624 5.7114 -2.7745 12 6 1.9955 -0.7660 1.1376 13 1 1.6866 -0.2911 2.0687 14 6 3.5434 -0.8000 1.0644 15 6 4.0928 -1.3586 2.3106 16 6 3.7097 -2.8056 2.5862 17 6 2.3999 -2.8392 3.3367 18 6 1.2382 -2.9922 2.3366 19 6 1.4610 -2.1558 1.0894 20 8 1.1941 -2.6367 0.0143 21 1 -0.3634 0.5429 -0.8725 22 1 -0.3633 -1.0271 -0.0339 23 1 -0.3634 0.4842 0.9065 24 1 3.0842 1.3427 0.0428 25 1 1.6117 1.9079 0.8678 26 1 2.9417 4.9352 -0.7537 27 1 3.8523 -1.4200 0.2228 28 1 3.9215 0.2126 0.9241 29 1 5.1800 -1.2926 2.2673 30 1 3.7452 -0.7482 3.1440 31 1 3.6022 -3.3399 1.6422 32 1 4.4858 -3.2795 3.1871 33 1 2.3983 -3.6827 4.0270 34 1 2.2779 -1.9117 3.8961 35 1 1.1501 -4.0404 2.0511 36 1 0.3118 -2.6761 2.8162 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062749559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:54 Heat of formation + Delta-G solvation = -60.169225 kcal Electronic energy + Delta-G solvation = -16327.249132 eV Core-core repulsion = 13810.382271 eV Total energy + Delta-G solvation = -2516.866862 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.45187 -38.09738 -37.33268 -34.68096 -33.11938 -30.69403 -29.28428 -26.90174 -25.70985 -24.18260 -22.57457 -21.30419 -19.66490 -18.56231 -17.51093 -17.00945 -16.48557 -16.07948 -15.80233 -15.28464 -15.05775 -14.85335 -14.51871 -14.22985 -13.88615 -13.64870 -13.28934 -13.03675 -12.80578 -12.60368 -12.39630 -12.36400 -12.03936 -11.81605 -11.68825 -11.49324 -11.33423 -11.11809 -10.61310 -10.31490 -9.04221 -8.22856 -6.31827 1.01482 1.39189 1.40733 1.51751 2.38353 2.90096 3.09546 3.37618 3.73949 3.84460 4.03184 4.10084 4.14729 4.33649 4.40259 4.48102 4.53728 4.69879 4.75526 4.90538 4.94488 5.00387 5.07004 5.15154 5.20589 5.27121 5.29937 5.32955 5.37471 5.49933 5.62380 6.01711 6.23797 6.47728 6.71792 6.83113 7.37059 8.88194 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043431 B = 0.007137 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.550674 B = 3922.028614 C = 4307.624970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.543 5.543 3 C 0.208 3.792 4 C -0.530 4.530 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.967 3.033 9 H -0.274 1.274 10 H -0.268 1.268 11 H -0.278 1.278 12 C 0.031 3.969 13 H 0.062 0.938 14 C -0.097 4.097 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.109 4.109 18 C -0.159 4.159 19 C 0.369 3.631 20 O -0.485 6.485 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.018 0.982 24 H 0.023 0.977 25 H -0.034 1.034 26 H 0.266 0.734 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -12.453 10.277 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.268 5.268 3 C 0.082 3.918 4 C -0.568 4.568 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.199 1.199 10 H -0.193 1.193 11 H -0.203 1.203 12 C -0.078 4.078 13 H 0.079 0.921 14 C -0.135 4.135 15 C -0.159 4.159 16 C -0.161 4.161 17 C -0.146 4.146 18 C -0.197 4.197 19 C 0.245 3.755 20 O -0.359 6.359 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.037 0.963 24 H 0.041 0.959 25 H -0.017 1.017 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.247 -12.773 9.313 15.809 hybrid contribution -0.450 1.390 -0.286 1.489 sum -0.203 -11.383 9.027 14.529 Atomic orbital electron populations 1.22197 0.87920 1.00350 1.00355 1.61895 1.07870 1.15813 1.41207 1.19485 0.94929 0.82677 0.94684 1.21473 1.32713 0.97283 1.05379 0.92572 1.25837 0.95101 0.98042 1.00234 1.70061 1.37788 1.12303 1.36826 0.85418 0.78861 0.77449 0.79105 1.19928 1.19262 1.20313 1.22316 0.97646 0.94141 0.93698 0.92063 1.20809 0.91227 1.01927 0.99537 1.20501 1.01620 0.97162 0.96568 1.21238 0.98796 0.95545 1.00557 1.21499 0.91873 1.04468 0.96785 1.22607 1.02444 1.00440 0.94202 1.24989 0.71171 0.88397 0.90910 1.90359 1.39593 1.72116 1.33846 0.92208 0.91975 0.96342 0.95938 1.01682 0.92558 0.93011 0.91938 0.90799 0.90926 0.93388 0.88769 0.88070 0.90411 0.88595 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.73 8.95 127.69 1.14 2.87 16 2 N -0.54 -25.42 4.34 -905.12 -3.93 -29.35 16 3 C 0.21 11.32 4.50 85.56 0.39 11.70 16 4 C -0.53 -31.13 8.46 25.60 0.22 -30.92 16 5 H 0.06 3.31 6.85 -2.91 -0.02 3.29 16 6 C 0.01 0.36 5.46 84.65 0.46 0.83 16 7 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 8 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.03 1.16 1.72 44.32 0.08 1.23 16 13 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 14 C -0.10 -3.34 4.92 29.47 0.15 -3.20 16 15 C -0.12 -2.89 5.11 28.53 0.15 -2.75 16 16 C -0.12 -2.35 5.49 29.68 0.16 -2.18 16 17 C -0.11 -1.73 5.80 30.30 0.18 -1.55 16 18 C -0.16 -3.29 6.00 30.56 0.18 -3.11 16 19 C 0.37 11.97 3.97 28.93 0.11 12.08 16 20 O -0.48 -19.55 15.96 -1.44 -0.02 -19.58 16 21 H 0.06 2.77 6.56 -2.39 -0.02 2.75 16 22 H 0.06 2.47 6.15 -2.39 -0.01 2.45 16 23 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.02 1.29 5.76 -2.39 -0.01 1.28 16 25 H -0.03 -2.00 8.14 -2.38 -0.02 -2.02 16 26 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 27 H 0.05 1.90 8.12 -2.39 -0.02 1.89 16 28 H 0.06 2.49 5.81 -2.39 -0.01 2.48 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.61 7.24 -2.39 -0.02 1.60 16 31 H 0.05 1.09 7.07 -2.38 -0.02 1.07 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.19 7.24 -2.39 -0.02 1.17 16 35 H 0.10 1.84 8.12 -2.39 -0.02 1.82 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -69.37 279.03 2.61 -66.76 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.05 Total: 5.53 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 3.21 Total: -15.00 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.65 Total: -85.00 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.02 Total: -19.58 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.37 2.61 -66.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062749559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.587 kcal (2) G-P(sol) polarization free energy of solvation -69.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds