Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 108.56605 * 2 1 4 4 C 1.51795 * 108.61361 * 117.93592 * 2 1 3 5 5 C 1.53060 * 110.74309 * 187.92485 * 4 2 1 6 6 C 1.51422 * 108.49588 * 275.08602 * 5 4 2 7 7 O 1.21280 * 119.88928 * 251.23019 * 6 5 4 8 8 N 1.33364 * 120.22127 * 71.25115 * 6 5 4 9 9 C 1.46502 * 119.78865 * 180.26461 * 8 6 5 10 10 C 1.53000 * 109.46838 * 90.00214 * 9 8 6 11 11 C 1.50708 * 109.46973 * 180.02562 * 10 9 8 12 12 H 1.07991 * 119.99789 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00008 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00089 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.47197 * 120.42687 * 0.53938 * 8 6 5 20 20 C 1.51778 * 108.61199 * 242.19430 * 2 1 3 21 21 H 1.08999 * 109.46932 * 302.06694 * 1 2 3 22 22 H 1.09000 * 109.47440 * 62.06236 * 1 2 3 23 23 H 1.08996 * 109.47247 * 182.06695 * 1 2 3 24 24 H 1.08996 * 109.22538 * 67.59884 * 4 2 1 25 25 H 1.09003 * 109.22085 * 308.24783 * 4 2 1 26 26 H 1.08997 * 109.63512 * 155.38081 * 5 4 2 27 27 H 1.08999 * 109.79747 * 34.88223 * 5 4 2 28 28 H 1.08996 * 109.46899 * 330.00267 * 9 8 6 29 29 H 1.08996 * 109.47057 * 209.99417 * 9 8 6 30 30 H 1.08994 * 109.48028 * 60.00077 * 10 9 8 31 31 H 1.09000 * 109.47206 * 299.99931 * 10 9 8 32 32 H 0.96997 * 119.99848 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.60558 * 47.51711 * 19 8 6 34 34 H 1.08994 * 109.60906 * 168.01805 * 19 8 6 35 35 H 1.08996 * 109.19664 * 292.23723 * 20 2 1 36 36 H 1.08996 * 109.19305 * 51.56935 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8770 1.0332 0.0000 4 6 2.0145 -0.6739 1.2709 5 6 3.5311 -0.5283 1.4175 6 6 4.1983 -1.6396 0.6348 7 8 4.7461 -2.5481 1.2225 8 7 4.1859 -1.6226 -0.6987 9 6 4.8293 -2.7057 -1.4464 10 6 3.8137 -3.8205 -1.7047 11 6 4.4757 -4.9350 -2.4733 12 1 5.5167 -4.8563 -2.7495 13 6 3.7525 -6.0556 -2.8229 14 7 4.3303 -7.0285 -3.4933 15 14 1.9520 -6.1921 -2.3445 16 1 1.8413 -6.8407 -1.0132 17 1 1.2320 -7.0088 -3.3544 18 1 1.3512 -4.8353 -2.2856 19 6 3.5352 -0.5194 -1.4241 20 6 2.0144 -0.6710 -1.2723 21 1 -0.3633 0.5456 0.8709 22 1 -0.3634 0.4815 -0.9079 23 1 -0.3633 -1.0269 0.0371 24 1 1.7574 -1.7326 1.2362 25 1 1.5252 -0.2144 2.1297 26 1 3.8064 -0.6047 2.4693 27 1 3.8488 0.4377 1.0251 28 1 5.6636 -3.1013 -0.8672 29 1 5.1971 -2.3218 -2.3979 30 1 2.9793 -3.4250 -2.2838 31 1 3.4458 -4.2044 -0.7532 32 1 3.8214 -7.8166 -3.7395 33 1 3.8535 0.4338 -1.0021 34 1 3.8071 -0.5643 -2.4786 35 1 1.7596 -1.7302 -1.2383 36 1 1.5224 -0.2114 -2.1295 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070612300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = -59.099657 kcal Electronic energy + Delta-G solvation = -16280.865547 eV Core-core repulsion = 13764.045066 eV Total energy + Delta-G solvation = -2516.820482 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.09631 -36.94629 -35.23364 -32.94540 -31.39090 -30.62982 -28.53922 -25.36623 -23.81709 -23.65599 -20.78352 -20.18504 -18.48138 -16.87011 -16.84785 -15.79773 -15.01180 -14.41985 -14.26645 -14.01846 -13.44569 -13.39158 -13.10615 -12.62645 -12.56536 -12.24449 -12.04324 -11.88234 -11.60067 -11.27711 -10.95422 -10.83371 -10.63144 -10.52607 -10.27871 -10.00402 -9.77295 -9.33173 -9.09566 -8.52345 -8.12915 -6.03520 -4.01591 3.09131 3.32650 3.39104 3.42047 3.50466 4.46521 4.55598 4.67599 4.72632 4.82948 5.24740 5.28391 5.31064 5.43666 5.45367 5.55304 5.56674 5.65506 5.78608 5.83433 5.98828 6.03369 6.09200 6.12602 6.18674 6.37780 6.45480 6.70002 6.82575 7.30050 7.40096 7.78566 7.93605 8.51840 8.67424 9.00350 9.58869 11.09815 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028088 B = 0.008644 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.641293 B = 3238.620935 C = 3670.561263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.108 4.108 5 C -0.137 4.137 6 C 0.507 3.493 7 O -0.549 6.549 8 N -0.606 5.606 9 C 0.123 3.877 10 C -0.021 4.021 11 C -0.519 4.519 12 H 0.073 0.927 13 C 0.069 3.931 14 N -0.902 5.902 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.267 1.267 19 C 0.112 3.888 20 C -0.140 4.140 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.263 0.737 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 17.726 5.912 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.177 4.177 6 C 0.295 3.705 7 O -0.427 6.427 8 N -0.337 5.337 9 C 0.002 3.998 10 C -0.059 4.059 11 C -0.557 4.557 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.192 1.192 19 C -0.011 4.011 20 C -0.178 4.178 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.677 17.068 6.124 19.324 hybrid contribution -1.042 -0.231 0.091 1.071 sum -7.719 16.837 6.215 19.537 Atomic orbital electron populations 1.21901 0.95218 1.02051 1.01487 1.20778 0.95945 0.99679 0.94577 0.91387 1.21283 0.93570 1.02054 0.97704 1.21980 0.96380 0.98133 1.01253 1.20409 0.80064 0.87456 0.82611 1.90719 1.45416 1.37466 1.69110 1.48094 1.55370 1.24384 1.05900 1.21690 0.96840 0.86748 0.94535 1.19853 0.95265 0.94132 0.96660 1.21002 0.98988 1.00947 1.34775 0.90874 1.24974 0.98238 0.95473 0.94557 1.69910 1.36744 1.07935 1.39536 0.86769 0.85702 0.78317 0.78413 1.20274 1.21398 1.19189 1.21873 0.92054 0.89397 0.97784 1.22037 0.95750 1.02763 0.97281 0.92811 0.92616 0.92590 0.91377 0.91002 0.89001 0.89743 0.90442 0.91309 0.96624 0.96673 0.92722 0.91206 0.89515 0.90481 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.03 37.16 0.34 -1.04 16 2 C -0.09 -0.92 2.22 -91.85 -0.20 -1.13 16 3 H 0.07 0.57 7.88 -51.93 -0.41 0.17 16 4 C -0.11 -1.23 4.91 -27.31 -0.13 -1.37 16 5 C -0.14 -1.72 5.56 -27.50 -0.15 -1.87 16 6 C 0.51 9.10 6.79 -11.26 -0.08 9.02 16 7 O -0.55 -12.54 16.60 5.56 0.09 -12.45 16 8 N -0.61 -10.43 2.45 -172.87 -0.42 -10.85 16 9 C 0.12 2.57 5.33 -4.04 -0.02 2.55 16 10 C -0.02 -0.52 4.36 -27.88 -0.12 -0.64 16 11 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 12 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 15 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 16 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 19 C 0.11 1.41 5.95 -3.36 -0.02 1.39 16 20 C -0.14 -1.68 5.00 -27.05 -0.14 -1.82 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 25 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 27 H 0.08 0.84 6.78 -51.93 -0.35 0.49 16 28 H 0.08 1.78 7.37 -51.93 -0.38 1.39 16 29 H 0.07 1.32 7.84 -51.93 -0.41 0.91 16 30 H 0.02 0.38 6.96 -51.93 -0.36 0.02 16 31 H 0.01 0.40 7.57 -51.93 -0.39 0.01 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.07 0.69 6.71 -51.93 -0.35 0.34 16 34 H 0.09 1.03 7.76 -51.93 -0.40 0.63 16 35 H 0.08 1.19 7.80 -51.93 -0.41 0.79 16 36 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 LS Contribution 285.00 15.07 4.29 4.29 Total: -1.00 -33.93 285.00 -6.87 -40.80 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.98 Total: -3.62 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -0.96 Total: -8.44 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.35 Total: -38.40 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.93 -6.87 -40.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070612300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.296 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds