Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 108.56605 * 2 1 4 4 C 1.51795 * 108.61361 * 117.93592 * 2 1 3 5 5 C 1.53060 * 110.74309 * 187.92485 * 4 2 1 6 6 C 1.51422 * 108.49588 * 275.08602 * 5 4 2 7 7 O 1.21280 * 119.88928 * 251.23019 * 6 5 4 8 8 N 1.33364 * 120.22127 * 71.25115 * 6 5 4 9 9 C 1.46502 * 119.78865 * 180.26461 * 8 6 5 10 10 C 1.53000 * 109.46838 * 90.00214 * 9 8 6 11 11 C 1.50708 * 109.46973 * 180.02562 * 10 9 8 12 12 H 1.07991 * 119.99789 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00008 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00089 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.47197 * 120.42687 * 0.53938 * 8 6 5 20 20 C 1.51778 * 108.61199 * 242.19430 * 2 1 3 21 21 H 1.08999 * 109.46932 * 302.06694 * 1 2 3 22 22 H 1.09000 * 109.47440 * 62.06236 * 1 2 3 23 23 H 1.08996 * 109.47247 * 182.06695 * 1 2 3 24 24 H 1.08996 * 109.22538 * 67.59884 * 4 2 1 25 25 H 1.09003 * 109.22085 * 308.24783 * 4 2 1 26 26 H 1.08997 * 109.63512 * 155.38081 * 5 4 2 27 27 H 1.08999 * 109.79747 * 34.88223 * 5 4 2 28 28 H 1.08996 * 109.46899 * 330.00267 * 9 8 6 29 29 H 1.08996 * 109.47057 * 209.99417 * 9 8 6 30 30 H 1.08994 * 109.48028 * 60.00077 * 10 9 8 31 31 H 1.09000 * 109.47206 * 299.99931 * 10 9 8 32 32 H 0.96997 * 119.99848 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.60558 * 47.51711 * 19 8 6 34 34 H 1.08994 * 109.60906 * 168.01805 * 19 8 6 35 35 H 1.08996 * 109.19664 * 292.23723 * 20 2 1 36 36 H 1.08996 * 109.19305 * 51.56935 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8770 1.0332 0.0000 4 6 2.0145 -0.6739 1.2709 5 6 3.5311 -0.5283 1.4175 6 6 4.1983 -1.6396 0.6348 7 8 4.7461 -2.5481 1.2225 8 7 4.1859 -1.6226 -0.6987 9 6 4.8293 -2.7057 -1.4464 10 6 3.8137 -3.8205 -1.7047 11 6 4.4757 -4.9350 -2.4733 12 1 5.5167 -4.8563 -2.7495 13 6 3.7525 -6.0556 -2.8229 14 7 4.3303 -7.0285 -3.4933 15 14 1.9520 -6.1921 -2.3445 16 1 1.8413 -6.8407 -1.0132 17 1 1.2320 -7.0088 -3.3544 18 1 1.3512 -4.8353 -2.2856 19 6 3.5352 -0.5194 -1.4241 20 6 2.0144 -0.6710 -1.2723 21 1 -0.3633 0.5456 0.8709 22 1 -0.3634 0.4815 -0.9079 23 1 -0.3633 -1.0269 0.0371 24 1 1.7574 -1.7326 1.2362 25 1 1.5252 -0.2144 2.1297 26 1 3.8064 -0.6047 2.4693 27 1 3.8488 0.4377 1.0251 28 1 5.6636 -3.1013 -0.8672 29 1 5.1971 -2.3218 -2.3979 30 1 2.9793 -3.4250 -2.2838 31 1 3.4458 -4.2044 -0.7532 32 1 3.8214 -7.8166 -3.7395 33 1 3.8535 0.4338 -1.0021 34 1 3.8071 -0.5643 -2.4786 35 1 1.7596 -1.7302 -1.2383 36 1 1.5224 -0.2114 -2.1295 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070612300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = -81.527052 kcal Electronic energy + Delta-G solvation = -16281.838072 eV Core-core repulsion = 13764.045066 eV Total energy + Delta-G solvation = -2517.793006 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.38834 -38.08779 -36.72122 -35.00813 -32.65764 -32.21710 -29.76297 -27.01648 -25.04243 -24.71796 -22.70558 -21.04645 -19.88023 -18.95794 -18.09104 -17.23338 -16.60015 -15.99328 -15.35930 -15.23726 -14.87657 -14.77033 -14.56531 -14.35441 -13.80796 -13.60662 -13.27197 -12.97591 -12.86510 -12.81513 -12.39911 -12.20413 -12.00463 -11.79069 -11.59086 -11.58199 -11.35580 -11.27105 -10.83826 -10.62663 -9.60268 -8.36280 -6.40541 1.27226 1.29525 1.40592 1.72278 2.17677 2.28843 2.98603 3.55189 3.79177 3.89896 3.91108 4.25803 4.30035 4.42915 4.48738 4.56262 4.58028 4.75425 4.78811 4.82434 4.89049 4.93245 5.01185 5.08339 5.19451 5.22062 5.32478 5.34072 5.39906 5.48550 5.57793 5.71207 6.18937 6.58198 6.65880 7.23249 7.29760 8.80275 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028088 B = 0.008644 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.641293 B = 3238.620935 C = 3670.561263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 H 0.102 0.898 4 C -0.106 4.106 5 C -0.123 4.123 6 C 0.494 3.506 7 O -0.612 6.612 8 N -0.604 5.604 9 C 0.132 3.868 10 C -0.007 4.007 11 C -0.533 4.533 12 H 0.038 0.962 13 C 0.011 3.989 14 N -0.945 5.945 15 Si 0.947 3.053 16 H -0.278 1.278 17 H -0.273 1.273 18 H -0.248 1.248 19 C 0.104 3.896 20 C -0.139 4.139 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.034 0.966 24 H 0.031 0.969 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.028 0.972 31 H -0.008 1.008 32 H 0.268 0.732 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.035 0.965 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 20.999 6.249 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.120 0.880 4 C -0.144 4.144 5 C -0.163 4.163 6 C 0.284 3.716 7 O -0.495 6.495 8 N -0.335 5.335 9 C 0.009 3.991 10 C -0.045 4.045 11 C -0.571 4.571 12 H 0.057 0.943 13 C -0.187 4.187 14 N -0.585 5.585 15 Si 0.771 3.229 16 H -0.204 1.204 17 H -0.199 1.199 18 H -0.172 1.172 19 C -0.017 4.017 20 C -0.177 4.177 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.141 0.859 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.010 0.990 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.054 0.946 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.872 20.394 6.438 23.154 hybrid contribution -0.282 -1.261 -0.043 1.292 sum -9.154 19.134 6.396 22.154 Atomic orbital electron populations 1.21889 0.94566 1.01176 1.02882 1.20795 0.96466 1.00859 0.92584 0.87961 1.21323 0.92801 1.00354 0.99910 1.22001 0.96444 0.97238 1.00635 1.21554 0.79124 0.88079 0.82813 1.90686 1.48192 1.40281 1.70346 1.48176 1.54958 1.24303 1.06040 1.21280 0.95101 0.87313 0.95383 1.19668 0.96122 0.94056 0.94684 1.21329 0.97871 1.02768 1.35176 0.94326 1.25910 1.03386 0.95007 0.94402 1.70042 1.38910 1.08751 1.40813 0.85708 0.79772 0.79379 0.78049 1.20425 1.19854 1.17181 1.22293 0.92127 0.89132 0.98120 1.22040 0.95436 1.00655 0.99585 0.91167 0.91498 0.94652 0.94983 0.88116 0.88565 0.85895 0.93513 0.89443 0.95384 0.98981 0.92287 0.87188 0.88761 0.94591 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.03 71.98 0.65 -1.53 16 2 C -0.09 -1.41 2.22 -11.59 -0.03 -1.44 16 3 H 0.10 1.03 7.88 -2.39 -0.02 1.01 16 4 C -0.11 -2.09 4.91 30.22 0.15 -1.94 16 5 C -0.12 -2.71 5.56 30.10 0.17 -2.54 16 6 C 0.49 17.48 6.79 88.11 0.60 18.08 16 7 O -0.61 -28.97 16.60 -3.03 -0.05 -29.02 16 8 N -0.60 -20.23 2.45 -820.02 -2.01 -22.23 16 9 C 0.13 5.64 5.33 86.38 0.46 6.10 16 10 C -0.01 -0.35 4.36 29.85 0.13 -0.22 16 11 C -0.53 -32.29 9.66 25.60 0.25 -32.04 16 12 H 0.04 2.53 7.99 -2.92 -0.02 2.50 16 13 C 0.01 0.64 5.47 84.65 0.46 1.10 16 14 N -0.94 -60.86 13.96 21.45 0.30 -60.56 16 15 Si 0.95 46.78 27.47 68.60 1.88 48.67 16 16 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 17 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 19 C 0.10 2.26 5.95 86.44 0.51 2.77 16 20 C -0.14 -2.89 5.00 30.39 0.15 -2.73 16 21 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 22 H 0.07 0.84 8.09 -2.39 -0.02 0.83 16 23 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.03 0.86 7.86 -2.39 -0.02 0.84 16 25 H 0.10 1.44 8.10 -2.39 -0.02 1.42 16 26 H 0.10 2.06 8.13 -2.39 -0.02 2.04 16 27 H 0.12 1.77 6.78 -2.39 -0.02 1.75 16 28 H 0.05 2.26 7.37 -2.39 -0.02 2.24 16 29 H 0.09 3.35 7.84 -2.39 -0.02 3.33 16 30 H 0.03 1.34 6.96 -2.39 -0.02 1.33 16 31 H -0.01 -0.45 7.57 -2.39 -0.02 -0.47 16 32 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 33 H 0.11 1.55 6.71 -2.39 -0.02 1.54 16 34 H 0.09 1.92 7.76 -2.39 -0.02 1.90 16 35 H 0.04 1.05 7.80 -2.39 -0.02 1.03 16 36 H 0.10 1.57 8.06 -2.39 -0.02 1.56 16 Total: -1.00 -78.48 285.00 4.61 -73.87 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 0.98 Total: 3.66 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 3.51 Total: -14.39 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.71 Total: -82.79 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.05 Total: -29.02 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.88 Total: 48.67 kcal Total: -78.48 4.61 -73.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070612300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.653 kcal (2) G-P(sol) polarization free energy of solvation -78.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds