Wall clock time and date at job start Mon Mar 30 2020 03:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 120.00236 * 2 1 4 4 N 1.34776 * 120.00314 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00139 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.46913 * 35.00537 * 5 4 2 7 7 C 1.52997 * 109.47269 * 275.00485 * 5 4 2 8 8 C 1.53004 * 109.47236 * 299.99844 * 7 5 4 9 9 C 1.52997 * 109.47024 * 300.00477 * 8 7 5 10 10 C 1.52997 * 109.47504 * 59.99687 * 9 8 7 11 11 C 1.52997 * 109.46834 * 155.00103 * 5 4 2 12 12 H 1.09004 * 109.46881 * 179.97438 * 11 5 4 13 13 C 1.52997 * 109.47504 * 300.00238 * 11 5 4 14 14 C 1.50701 * 109.47212 * 184.99949 * 13 11 5 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 H 1.08998 * 109.46774 * 269.99814 * 1 2 3 23 23 H 1.08995 * 109.46828 * 29.99836 * 1 2 3 24 24 H 1.09003 * 109.46878 * 149.99967 * 1 2 3 25 25 H 0.96997 * 119.99966 * 0.02562 * 4 2 1 26 26 H 1.09004 * 109.47346 * 180.02562 * 7 5 4 27 27 H 1.09001 * 109.47630 * 59.99974 * 7 5 4 28 28 H 1.09000 * 109.47403 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46741 * 59.99889 * 8 7 5 30 30 H 1.09004 * 109.47325 * 299.99623 * 9 8 7 31 31 H 1.09002 * 109.47016 * 179.97438 * 9 8 7 32 32 H 1.09001 * 109.47630 * 180.02562 * 10 9 8 33 33 H 1.09004 * 109.47346 * 59.99924 * 10 9 8 34 34 H 1.09002 * 109.47153 * 64.99951 * 13 11 5 35 35 H 1.09001 * 109.46832 * 305.00142 * 13 11 5 36 36 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1671 0.0000 6 1 4.0095 -0.3249 0.5888 7 6 4.1555 -1.0422 -1.4373 8 6 3.6452 -2.2244 -2.2638 9 6 4.1554 -3.5313 -1.6535 10 6 3.6459 -3.6562 -0.2163 11 6 4.1562 -2.4740 0.6102 12 1 5.2462 -2.4742 0.6094 13 6 3.6467 -2.5989 2.0475 14 6 4.2478 -3.8229 2.6890 15 1 4.9258 -4.4489 2.1279 16 6 3.9331 -4.1430 3.9926 17 7 4.4581 -5.2109 4.5526 18 14 2.7610 -3.0599 4.9634 19 1 1.3690 -3.5403 4.7712 20 1 3.1107 -3.1203 6.4053 21 1 2.8714 -1.6583 4.4854 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6960 -2.0072 0.0005 26 1 5.2455 -1.0426 -1.4378 27 1 3.7920 -0.1111 -1.8721 28 1 4.0085 -2.1357 -3.2877 29 1 2.5552 -2.2244 -2.2634 30 1 5.2455 -3.5314 -1.6539 31 1 3.7915 -4.3735 -2.2421 32 1 4.0098 -4.5871 0.2187 33 1 2.5559 -3.6562 -0.2159 34 1 2.5604 -2.6883 2.0414 35 1 3.9353 -1.7132 2.6135 36 1 4.2364 -5.4364 5.4696 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075597029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:17 Heat of formation + Delta-G solvation = -71.053003 kcal Electronic energy + Delta-G solvation = -16355.645600 eV Core-core repulsion = 13838.306782 eV Total energy + Delta-G solvation = -2517.338818 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.95230 -37.80226 -33.41344 -33.35941 -31.39983 -30.48988 -28.63532 -26.97948 -23.03381 -22.17335 -20.93503 -19.96120 -18.66641 -17.08427 -16.46545 -15.47253 -15.23099 -14.70442 -14.24020 -13.86509 -13.62474 -13.20287 -12.67920 -12.60072 -12.52439 -12.15234 -12.01594 -11.73952 -11.54501 -11.36273 -10.86642 -10.63359 -10.38975 -10.03842 -9.91760 -9.61199 -9.57902 -9.44247 -9.04784 -8.62548 -8.52925 -6.06333 -4.03779 2.90381 3.27604 3.36862 3.41901 3.58407 4.43430 4.99470 5.11378 5.12758 5.16478 5.28047 5.28732 5.45939 5.59332 5.64981 5.80332 5.90586 5.93173 5.95264 6.00955 6.07270 6.29316 6.36253 6.46798 6.55214 6.75047 6.84523 6.89622 7.00159 7.25212 7.38539 7.75571 7.86210 8.51074 8.51967 8.98752 9.56770 11.06855 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.010013 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.440090 B = 2795.831492 C = 3631.308129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.507 3.493 3 O -0.558 6.558 4 N -0.712 5.712 5 C 0.145 3.855 6 H 0.082 0.918 7 C -0.128 4.128 8 C -0.114 4.114 9 C -0.122 4.122 10 C -0.105 4.105 11 C -0.080 4.080 12 H 0.077 0.923 13 C -0.006 4.006 14 C -0.516 4.516 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.400 0.600 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.011 0.989 35 H 0.015 0.985 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 5.644 -11.731 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.293 3.707 3 O -0.437 6.437 4 N -0.364 5.364 5 C 0.041 3.959 6 H 0.100 0.900 7 C -0.166 4.166 8 C -0.152 4.152 9 C -0.160 4.160 10 C -0.143 4.143 11 C -0.099 4.099 12 H 0.095 0.905 13 C -0.044 4.044 14 C -0.554 4.554 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 H 0.109 0.891 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.236 0.764 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.033 0.967 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.688 6.284 -11.558 14.333 hybrid contribution -0.875 0.007 0.721 1.134 sum -6.563 6.291 -10.837 14.146 Atomic orbital electron populations 1.21882 0.92510 1.04318 1.04621 1.20727 0.90378 0.83850 0.75705 1.90679 1.70845 1.31552 1.50638 1.46214 1.07830 1.08394 1.73940 1.21141 0.79154 1.00013 0.95609 0.90013 1.21896 1.00758 0.98104 0.95853 1.21478 1.00451 0.95096 0.98138 1.21622 1.00788 0.96480 0.97062 1.21507 0.99460 1.00100 0.93223 1.21336 1.00590 0.91331 0.96603 0.90450 1.19591 0.95891 0.97531 0.91337 1.21133 1.27988 1.08591 0.97654 0.90786 1.25015 0.95879 0.94881 0.97657 1.69911 1.44491 1.25846 1.14000 0.86834 0.81512 0.81946 0.79334 1.20423 1.21466 1.19054 0.89052 0.89325 0.90417 0.76384 0.91286 0.92226 0.92857 0.92461 0.92169 0.92695 0.90191 0.93237 0.97117 0.96694 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.30 36.01 0.37 -1.49 16 2 C 0.51 7.81 7.90 -10.99 -0.09 7.73 16 3 O -0.56 -10.83 16.76 5.55 0.09 -10.73 16 4 N -0.71 -10.73 3.62 -53.81 -0.19 -10.93 16 5 C 0.15 2.40 2.23 -67.93 -0.15 2.25 16 6 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 7 C -0.13 -1.82 5.60 -26.73 -0.15 -1.97 16 8 C -0.11 -1.44 5.77 -26.73 -0.15 -1.60 16 9 C -0.12 -1.66 5.92 -26.73 -0.16 -1.81 16 10 C -0.11 -1.74 4.84 -26.73 -0.13 -1.87 16 11 C -0.08 -1.46 1.93 -90.62 -0.18 -1.64 16 12 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 13 C -0.01 -0.14 3.28 -27.88 -0.09 -0.23 16 14 C -0.52 -14.01 8.96 -34.44 -0.31 -14.32 16 15 H 0.07 2.15 7.30 -52.49 -0.38 1.76 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 18 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.40 5.42 6.67 -40.82 -0.27 5.15 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.71 7.60 -51.93 -0.39 0.31 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 33 H 0.05 0.76 6.51 -51.93 -0.34 0.42 16 34 H 0.01 0.24 7.04 -51.93 -0.37 -0.13 16 35 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 283.20 15.07 4.27 4.27 Total: -1.00 -31.59 283.20 -6.71 -38.30 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.85 Total: 1.92 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.13 Total: -13.14 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.58 Total: -37.53 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.59 -6.71 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.753 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds