Wall clock time and date at job start Mon Mar 30 2020 03:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 120.00236 * 2 1 4 4 N 1.34776 * 120.00314 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00139 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.46913 * 35.00537 * 5 4 2 7 7 C 1.52997 * 109.47269 * 275.00485 * 5 4 2 8 8 C 1.53004 * 109.47236 * 299.99844 * 7 5 4 9 9 C 1.52997 * 109.47024 * 300.00477 * 8 7 5 10 10 C 1.52997 * 109.47504 * 59.99687 * 9 8 7 11 11 C 1.52997 * 109.46834 * 155.00103 * 5 4 2 12 12 H 1.09004 * 109.46881 * 179.97438 * 11 5 4 13 13 C 1.52997 * 109.47504 * 300.00238 * 11 5 4 14 14 C 1.50701 * 109.47212 * 184.99949 * 13 11 5 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 H 1.08998 * 109.46774 * 269.99814 * 1 2 3 23 23 H 1.08995 * 109.46828 * 29.99836 * 1 2 3 24 24 H 1.09003 * 109.46878 * 149.99967 * 1 2 3 25 25 H 0.96997 * 119.99966 * 0.02562 * 4 2 1 26 26 H 1.09004 * 109.47346 * 180.02562 * 7 5 4 27 27 H 1.09001 * 109.47630 * 59.99974 * 7 5 4 28 28 H 1.09000 * 109.47403 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46741 * 59.99889 * 8 7 5 30 30 H 1.09004 * 109.47325 * 299.99623 * 9 8 7 31 31 H 1.09002 * 109.47016 * 179.97438 * 9 8 7 32 32 H 1.09001 * 109.47630 * 180.02562 * 10 9 8 33 33 H 1.09004 * 109.47346 * 59.99924 * 10 9 8 34 34 H 1.09002 * 109.47153 * 64.99951 * 13 11 5 35 35 H 1.09001 * 109.46832 * 305.00142 * 13 11 5 36 36 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1671 0.0000 6 1 4.0095 -0.3249 0.5888 7 6 4.1555 -1.0422 -1.4373 8 6 3.6452 -2.2244 -2.2638 9 6 4.1554 -3.5313 -1.6535 10 6 3.6459 -3.6562 -0.2163 11 6 4.1562 -2.4740 0.6102 12 1 5.2462 -2.4742 0.6094 13 6 3.6467 -2.5989 2.0475 14 6 4.2478 -3.8229 2.6890 15 1 4.9258 -4.4489 2.1279 16 6 3.9331 -4.1430 3.9926 17 7 4.4581 -5.2109 4.5526 18 14 2.7610 -3.0599 4.9634 19 1 1.3690 -3.5403 4.7712 20 1 3.1107 -3.1203 6.4053 21 1 2.8714 -1.6583 4.4854 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6960 -2.0072 0.0005 26 1 5.2455 -1.0426 -1.4378 27 1 3.7920 -0.1111 -1.8721 28 1 4.0085 -2.1357 -3.2877 29 1 2.5552 -2.2244 -2.2634 30 1 5.2455 -3.5314 -1.6539 31 1 3.7915 -4.3735 -2.2421 32 1 4.0098 -4.5871 0.2187 33 1 2.5559 -3.6562 -0.2159 34 1 2.5604 -2.6883 2.0414 35 1 3.9353 -1.7132 2.6135 36 1 4.2364 -5.4364 5.4696 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075597029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:17 Heat of formation + Delta-G solvation = -91.417081 kcal Electronic energy + Delta-G solvation = -16356.528653 eV Core-core repulsion = 13838.306782 eV Total energy + Delta-G solvation = -2518.221870 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.23764 -39.11493 -35.30946 -34.62468 -33.19601 -31.60391 -29.81893 -28.62136 -24.73642 -23.44919 -22.18201 -21.49486 -19.94140 -18.99388 -17.86569 -16.74619 -16.57289 -16.19911 -15.89203 -15.06956 -14.85183 -14.77490 -14.55416 -13.96460 -13.75127 -13.39163 -13.22645 -13.01692 -12.90600 -12.85546 -12.44664 -12.16038 -11.82587 -11.79437 -11.49472 -11.27973 -10.98510 -10.85029 -10.77109 -10.68711 -9.90024 -8.27313 -6.28848 1.31441 1.36121 1.46543 1.72680 2.35185 2.42443 3.08129 3.78183 3.93143 3.95265 4.04771 4.30018 4.35693 4.52480 4.59526 4.64494 4.66640 4.70057 4.77310 4.84678 5.04466 5.08991 5.15732 5.18193 5.24220 5.38448 5.42733 5.48794 5.56890 5.59311 5.71596 5.74759 6.32427 6.67643 6.79007 7.34480 7.34976 8.89042 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.010013 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.440090 B = 2795.831492 C = 3631.308129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.500 3.500 3 O -0.604 6.604 4 N -0.708 5.708 5 C 0.151 3.849 6 H 0.054 0.946 7 C -0.121 4.121 8 C -0.106 4.106 9 C -0.115 4.115 10 C -0.101 4.101 11 C -0.074 4.074 12 H 0.062 0.938 13 C 0.000 4.000 14 C -0.515 4.515 15 H 0.041 0.959 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.941 3.059 19 H -0.260 1.260 20 H -0.289 1.289 21 H -0.260 1.260 22 H 0.101 0.899 23 H 0.098 0.902 24 H 0.107 0.893 25 H 0.410 0.590 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.023 0.977 35 H -0.001 1.001 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 6.347 -13.159 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.289 3.711 3 O -0.486 6.486 4 N -0.361 5.361 5 C 0.046 3.954 6 H 0.072 0.928 7 C -0.160 4.160 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.138 4.138 11 C -0.092 4.092 12 H 0.081 0.919 13 C -0.038 4.038 14 C -0.553 4.553 15 H 0.059 0.941 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.766 3.234 19 H -0.185 1.185 20 H -0.215 1.215 21 H -0.185 1.185 22 H 0.119 0.881 23 H 0.116 0.884 24 H 0.126 0.874 25 H 0.247 0.753 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.018 0.982 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.818 6.969 -13.006 16.699 hybrid contribution -0.137 -0.252 1.159 1.194 sum -7.955 6.717 -11.847 15.772 Atomic orbital electron populations 1.21906 0.88378 1.06346 1.05819 1.21609 0.92316 0.82884 0.74291 1.90662 1.72207 1.33070 1.52670 1.46205 1.07100 1.09100 1.73668 1.20895 0.80410 0.97367 0.96698 0.92772 1.21831 1.00989 0.98912 0.94260 1.21439 1.01019 0.93197 0.98692 1.21560 1.00642 0.98006 0.95031 1.21424 1.00286 0.97356 0.94776 1.21187 0.99787 0.93615 0.94660 0.91923 1.19507 0.96237 0.94495 0.93536 1.21433 1.26939 1.09359 0.97575 0.94089 1.25894 0.97893 0.96244 0.98986 1.70056 1.46582 1.27956 1.14549 0.85787 0.79950 0.80134 0.77517 1.18505 1.21476 1.18451 0.88067 0.88363 0.87420 0.75254 0.90988 0.92527 0.90639 0.91460 0.92497 0.90695 0.93406 0.91735 0.95894 0.98232 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 10.30 71.24 0.73 -2.21 16 2 C 0.50 14.38 7.90 87.66 0.69 15.07 16 3 O -0.60 -22.92 16.76 -3.04 -0.05 -22.97 16 4 N -0.71 -19.88 3.62 -442.53 -1.60 -21.48 16 5 C 0.15 4.88 2.23 44.99 0.10 4.98 16 6 H 0.05 2.05 7.58 -2.39 -0.02 2.04 16 7 C -0.12 -3.25 5.60 30.59 0.17 -3.08 16 8 C -0.11 -2.34 5.77 30.59 0.18 -2.16 16 9 C -0.11 -2.85 5.92 30.59 0.18 -2.67 16 10 C -0.10 -3.22 4.84 30.59 0.15 -3.07 16 11 C -0.07 -2.69 1.93 -10.79 -0.02 -2.72 16 12 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 13 C 0.00 -0.02 3.28 29.85 0.10 0.08 16 14 C -0.51 -28.64 8.96 25.60 0.23 -28.41 16 15 H 0.04 2.49 7.30 -2.91 -0.02 2.47 16 16 C 0.01 0.37 5.47 84.66 0.46 0.83 16 17 N -0.95 -58.95 13.96 21.45 0.30 -58.66 16 18 Si 0.94 44.44 27.47 68.60 1.88 46.33 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 22 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.41 9.85 6.67 -92.71 -0.62 9.24 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.38 7.60 -2.39 -0.02 1.36 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.84 6.95 -2.39 -0.02 1.82 16 33 H 0.06 1.84 6.51 -2.39 -0.02 1.83 16 34 H 0.02 0.98 7.04 -2.39 -0.02 0.97 16 35 H 0.00 -0.03 7.20 -2.39 -0.02 -0.05 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -69.92 283.20 3.88 -66.04 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.38 Total: 14.10 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 2.97 Total: -23.35 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -1.30 Total: -80.13 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -69.92 3.88 -66.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.379 kcal (2) G-P(sol) polarization free energy of solvation -69.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds