Wall clock time and date at job start Mon Mar 30 2020 03:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99884 * 2 1 4 4 N 1.34780 * 119.99892 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99887 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47175 * 34.99778 * 5 4 2 7 7 C 1.52996 * 109.46993 * 274.99908 * 5 4 2 8 8 C 1.53002 * 109.46972 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47415 * 59.99860 * 8 7 5 10 10 C 1.53006 * 109.47164 * 300.00027 * 9 8 7 11 11 C 1.52997 * 109.47204 * 154.99884 * 5 4 2 12 12 H 1.09000 * 109.47140 * 59.99873 * 11 5 4 13 13 C 1.53006 * 109.46974 * 300.00267 * 11 5 4 14 14 C 1.50703 * 109.46970 * 174.99915 * 13 11 5 15 15 H 1.08003 * 120.00045 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99608 * 179.97438 * 14 13 11 17 17 N 1.31512 * 120.00300 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99597 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47337 * 90.00317 * 18 16 14 20 20 H 1.48501 * 109.47197 * 209.99943 * 18 16 14 21 21 H 1.48503 * 109.47479 * 330.00195 * 18 16 14 22 22 H 1.09002 * 109.47098 * 239.99875 * 1 2 3 23 23 H 1.08996 * 109.47464 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47348 * 120.00368 * 1 2 3 25 25 H 0.96999 * 119.99852 * 359.97438 * 4 2 1 26 26 H 1.08992 * 109.47534 * 60.00265 * 7 5 4 27 27 H 1.08996 * 109.47134 * 299.99460 * 7 5 4 28 28 H 1.09000 * 109.46986 * 299.99742 * 8 7 5 29 29 H 1.09001 * 109.47601 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46922 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47140 * 59.99976 * 9 8 7 32 32 H 1.08993 * 109.46955 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.47050 * 300.00004 * 10 9 8 34 34 H 1.08998 * 109.46741 * 294.99449 * 13 11 5 35 35 H 1.08994 * 109.47134 * 55.00148 * 13 11 5 36 36 H 0.97000 * 119.99809 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0094 -0.3255 0.5884 7 6 4.1553 -1.0412 -1.4382 8 6 5.6853 -1.0419 -1.4389 9 6 6.1951 -2.3496 -0.8299 10 6 5.6856 -2.4756 0.6073 11 6 4.1561 -2.4747 0.6081 12 1 3.7925 -3.3164 0.0186 13 6 3.6466 -2.6007 2.0453 14 6 4.0455 -3.9424 2.6038 15 1 4.6067 -4.6356 1.9948 16 6 3.6949 -4.2843 3.8927 17 7 3.0129 -3.4395 4.6348 18 14 4.1900 -5.9471 4.5852 19 1 5.5177 -5.8348 5.2410 20 1 3.1814 -6.3883 5.5819 21 1 4.2645 -6.9400 3.4835 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3634 -0.5139 -0.8900 25 1 1.6958 -2.0073 -0.0005 26 1 3.7919 -0.1098 -1.8722 27 1 3.7918 -1.8829 -2.0277 28 1 6.0492 -0.2004 -0.8493 29 1 6.0483 -0.9516 -2.4627 30 1 7.2851 -2.3498 -0.8300 31 1 5.8311 -3.1911 -1.4195 32 1 6.0492 -3.4070 1.0412 33 1 6.0495 -1.6341 1.1969 34 1 4.0815 -1.8092 2.6556 35 1 2.5603 -2.5116 2.0548 36 1 2.7666 -3.6800 5.5416 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075597035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:20 Heat of formation + Delta-G solvation = -77.726426 kcal Electronic energy + Delta-G solvation = -16128.201581 eV Core-core repulsion = 13610.573382 eV Total energy + Delta-G solvation = -2517.628199 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.61993 -37.70771 -33.75108 -33.33170 -31.13544 -30.30971 -28.21738 -26.47501 -23.29616 -22.09093 -20.29384 -20.03826 -19.19825 -16.57945 -16.24650 -15.78514 -14.86810 -14.59723 -14.05907 -13.84223 -13.43929 -13.22305 -12.69027 -12.52217 -12.11967 -12.02841 -11.86633 -11.65182 -11.27755 -10.88355 -10.79494 -10.67954 -10.40247 -10.19221 -9.94575 -9.76277 -9.41063 -9.23000 -8.96765 -8.46034 -8.33703 -6.01138 -4.03332 3.03564 3.29758 3.36745 3.38887 3.69203 4.43756 5.10154 5.16276 5.25751 5.34070 5.35002 5.48101 5.57580 5.65207 5.76569 5.92118 5.99849 6.02243 6.05361 6.08590 6.21452 6.45489 6.52269 6.55525 6.58986 6.94180 6.98649 7.07018 7.12090 7.65687 7.78918 7.97827 7.99180 8.40482 8.65009 9.03313 9.60520 11.09784 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023165 B = 0.008797 C = 0.006736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.445697 B = 3182.164936 C = 4156.071307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.509 3.491 3 O -0.559 6.559 4 N -0.714 5.714 5 C 0.147 3.853 6 H 0.081 0.919 7 C -0.125 4.125 8 C -0.113 4.113 9 C -0.122 4.122 10 C -0.101 4.101 11 C -0.087 4.087 12 H 0.060 0.940 13 C 0.029 3.971 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.401 0.599 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.015 0.985 35 H 0.018 0.982 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 2.379 -10.956 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.296 3.704 3 O -0.438 6.438 4 N -0.364 5.364 5 C 0.043 3.957 6 H 0.099 0.901 7 C -0.164 4.164 8 C -0.151 4.151 9 C -0.160 4.160 10 C -0.139 4.139 11 C -0.105 4.105 12 H 0.079 0.921 13 C -0.008 4.008 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.236 0.764 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.566 3.147 -10.774 11.239 hybrid contribution -0.056 -1.369 0.568 1.483 sum -0.622 1.778 -10.206 10.379 Atomic orbital electron populations 1.21909 0.92477 1.04902 1.04132 1.20704 0.90380 0.83781 0.75576 1.90670 1.70957 1.31572 1.50631 1.46094 1.07776 1.08456 1.74058 1.21129 0.78755 1.00450 0.95352 0.90097 1.21894 0.95818 1.01297 0.97408 1.21464 0.95161 0.98423 1.00103 1.21639 0.99572 0.97058 0.97717 1.21452 0.95270 1.02725 0.94495 1.21470 0.95276 0.93775 1.00027 0.92132 1.19126 0.96276 0.96859 0.88549 1.21238 1.34893 1.01276 0.98094 0.92594 1.25015 0.95286 0.96891 0.97224 1.69969 1.38897 1.35406 1.09053 0.86656 0.78275 0.84515 0.78904 1.20734 1.21331 1.19939 0.89278 0.89495 0.89873 0.76431 0.92373 0.92312 0.92074 0.92635 0.92683 0.92443 0.90691 0.92563 0.96681 0.96363 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.32 36.01 0.37 -1.69 16 2 C 0.51 8.49 7.90 -10.98 -0.09 8.41 16 3 O -0.56 -11.54 16.75 5.56 0.09 -11.44 16 4 N -0.71 -11.70 4.30 -53.81 -0.23 -11.93 16 5 C 0.15 2.61 1.90 -67.93 -0.13 2.48 16 6 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 7 C -0.13 -1.90 5.50 -26.73 -0.15 -2.05 16 8 C -0.11 -1.59 5.92 -26.73 -0.16 -1.74 16 9 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 10 C -0.10 -1.83 5.01 -26.75 -0.13 -1.96 16 11 C -0.09 -1.67 1.71 -90.64 -0.16 -1.82 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.03 0.71 4.36 -27.88 -0.12 0.59 16 14 C -0.52 -13.89 8.41 -34.44 -0.29 -14.18 16 15 H 0.06 1.46 7.05 -52.48 -0.37 1.09 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.40 5.89 8.39 -40.82 -0.34 5.55 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.45 6.95 -51.93 -0.36 1.09 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.47 7.30 -51.93 -0.38 0.09 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 290.88 15.07 4.38 4.38 Total: -1.00 -31.25 290.88 -7.20 -38.45 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.05 Total: 2.41 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.11 Total: -12.42 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.50 Total: -37.57 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.25 -7.20 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.280 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds