Wall clock time and date at job start Mon Mar 30 2020 03:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99884 * 2 1 4 4 N 1.34780 * 119.99892 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99887 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47175 * 34.99778 * 5 4 2 7 7 C 1.52996 * 109.46993 * 274.99908 * 5 4 2 8 8 C 1.53002 * 109.46972 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47415 * 59.99860 * 8 7 5 10 10 C 1.53006 * 109.47164 * 300.00027 * 9 8 7 11 11 C 1.52997 * 109.47204 * 154.99884 * 5 4 2 12 12 H 1.09000 * 109.47140 * 59.99873 * 11 5 4 13 13 C 1.53006 * 109.46974 * 300.00267 * 11 5 4 14 14 C 1.50703 * 109.46970 * 174.99915 * 13 11 5 15 15 H 1.08003 * 120.00045 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99608 * 179.97438 * 14 13 11 17 17 N 1.31512 * 120.00300 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99597 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47337 * 90.00317 * 18 16 14 20 20 H 1.48501 * 109.47197 * 209.99943 * 18 16 14 21 21 H 1.48503 * 109.47479 * 330.00195 * 18 16 14 22 22 H 1.09002 * 109.47098 * 239.99875 * 1 2 3 23 23 H 1.08996 * 109.47464 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47348 * 120.00368 * 1 2 3 25 25 H 0.96999 * 119.99852 * 359.97438 * 4 2 1 26 26 H 1.08992 * 109.47534 * 60.00265 * 7 5 4 27 27 H 1.08996 * 109.47134 * 299.99460 * 7 5 4 28 28 H 1.09000 * 109.46986 * 299.99742 * 8 7 5 29 29 H 1.09001 * 109.47601 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46922 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47140 * 59.99976 * 9 8 7 32 32 H 1.08993 * 109.46955 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.47050 * 300.00004 * 10 9 8 34 34 H 1.08998 * 109.46741 * 294.99449 * 13 11 5 35 35 H 1.08994 * 109.47134 * 55.00148 * 13 11 5 36 36 H 0.97000 * 119.99809 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0094 -0.3255 0.5884 7 6 4.1553 -1.0412 -1.4382 8 6 5.6853 -1.0419 -1.4389 9 6 6.1951 -2.3496 -0.8299 10 6 5.6856 -2.4756 0.6073 11 6 4.1561 -2.4747 0.6081 12 1 3.7925 -3.3164 0.0186 13 6 3.6466 -2.6007 2.0453 14 6 4.0455 -3.9424 2.6038 15 1 4.6067 -4.6356 1.9948 16 6 3.6949 -4.2843 3.8927 17 7 3.0129 -3.4395 4.6348 18 14 4.1900 -5.9471 4.5852 19 1 5.5177 -5.8348 5.2410 20 1 3.1814 -6.3883 5.5819 21 1 4.2645 -6.9400 3.4835 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3634 -0.5139 -0.8900 25 1 1.6958 -2.0073 -0.0005 26 1 3.7919 -0.1098 -1.8722 27 1 3.7918 -1.8829 -2.0277 28 1 6.0492 -0.2004 -0.8493 29 1 6.0483 -0.9516 -2.4627 30 1 7.2851 -2.3498 -0.8300 31 1 5.8311 -3.1911 -1.4195 32 1 6.0492 -3.4070 1.0412 33 1 6.0495 -1.6341 1.1969 34 1 4.0815 -1.8092 2.6556 35 1 2.5603 -2.5116 2.0548 36 1 2.7666 -3.6800 5.5416 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075597035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:20 Heat of formation + Delta-G solvation = -97.592975 kcal Electronic energy + Delta-G solvation = -16129.063059 eV Core-core repulsion = 13610.573382 eV Total energy + Delta-G solvation = -2518.489677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.02262 -39.13108 -35.32170 -35.09535 -32.88958 -31.51602 -29.50868 -28.24334 -25.10616 -23.46188 -21.81696 -21.42740 -20.61101 -18.50372 -17.67598 -17.27237 -16.54452 -16.15171 -15.43293 -15.20986 -14.83269 -14.61908 -14.29634 -13.93366 -13.63454 -13.53420 -13.19633 -13.04579 -12.87652 -12.58951 -12.48351 -12.15373 -11.92650 -11.70631 -11.50585 -11.36271 -11.05036 -10.85440 -10.69290 -10.50078 -9.86099 -8.15817 -6.25242 1.41354 1.41883 1.52474 1.71678 2.41758 2.42654 3.17874 3.78652 3.92360 4.01962 4.11837 4.31245 4.38232 4.52539 4.57720 4.63284 4.67710 4.69840 4.78477 4.95368 5.05305 5.15215 5.18972 5.24372 5.28977 5.46182 5.49048 5.50877 5.59833 5.61213 5.83404 5.89895 6.28787 6.67632 6.91619 7.34123 7.43377 8.95675 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023165 B = 0.008797 C = 0.006736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.445697 B = 3182.164936 C = 4156.071307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.499 3.501 3 O -0.606 6.606 4 N -0.713 5.713 5 C 0.151 3.849 6 H 0.044 0.956 7 C -0.115 4.115 8 C -0.112 4.112 9 C -0.112 4.112 10 C -0.102 4.102 11 C -0.074 4.074 12 H 0.073 0.927 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.065 0.935 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.958 3.042 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.260 1.260 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.411 0.589 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.038 0.962 34 H -0.028 1.028 35 H 0.001 0.999 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 0.821 -12.823 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.288 3.712 3 O -0.488 6.488 4 N -0.363 5.363 5 C 0.046 3.954 6 H 0.062 0.938 7 C -0.154 4.154 8 C -0.150 4.150 9 C -0.149 4.149 10 C -0.140 4.140 11 C -0.093 4.093 12 H 0.091 0.909 13 C 0.000 4.000 14 C -0.564 4.564 15 H 0.083 0.917 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.784 3.216 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.184 1.184 22 H 0.115 0.885 23 H 0.111 0.889 24 H 0.135 0.865 25 H 0.247 0.753 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.057 0.943 34 H -0.010 1.010 35 H 0.019 0.981 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.455 1.561 -12.660 12.764 hybrid contribution -0.102 -0.851 1.190 1.466 sum -0.557 0.710 -11.470 11.505 Atomic orbital electron populations 1.21909 0.88318 1.05986 1.06095 1.21625 0.92413 0.82900 0.74250 1.90645 1.72328 1.33066 1.52765 1.46130 1.07366 1.09121 1.73657 1.20964 0.79781 0.97897 0.96768 0.93794 1.21808 0.96763 1.01759 0.95074 1.21483 0.94092 0.97732 1.01660 1.21561 1.00720 0.97848 0.94810 1.21420 0.94198 1.01202 0.97188 1.21290 0.96322 0.95081 0.96630 0.90894 1.18982 0.94965 0.94695 0.91382 1.21646 1.34296 1.02036 0.98399 0.91688 1.25926 0.95328 1.00799 0.97805 1.70116 1.40423 1.37615 1.09418 0.85547 0.77743 0.79990 0.78359 1.20400 1.21211 1.18352 0.88459 0.88940 0.86480 0.75324 0.92948 0.90364 0.93120 0.89604 0.90769 0.90959 0.92128 0.94309 1.00980 0.98060 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 10.32 71.24 0.74 -2.87 16 2 C 0.50 16.64 7.90 87.66 0.69 17.33 16 3 O -0.61 -25.61 16.75 -3.03 -0.05 -25.66 16 4 N -0.71 -23.27 4.30 -442.54 -1.91 -25.18 16 5 C 0.15 5.39 1.90 44.99 0.09 5.48 16 6 H 0.04 1.89 7.58 -2.39 -0.02 1.88 16 7 C -0.12 -3.31 5.50 30.59 0.17 -3.14 16 8 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 9 C -0.11 -2.96 5.92 30.60 0.18 -2.78 16 10 C -0.10 -3.65 5.01 30.58 0.15 -3.49 16 11 C -0.07 -2.87 1.71 -10.81 -0.02 -2.89 16 12 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 13 C 0.04 1.87 4.36 29.85 0.13 2.00 16 14 C -0.53 -28.52 8.41 25.60 0.22 -28.30 16 15 H 0.06 3.34 7.05 -2.91 -0.02 3.32 16 16 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 17 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 18 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.09 1.95 8.12 -2.39 -0.02 1.94 16 24 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.41 11.73 8.39 -92.71 -0.78 10.95 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 2.32 6.95 -2.39 -0.02 2.30 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 35 H 0.00 0.06 7.30 -2.39 -0.02 0.04 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -69.53 290.88 3.61 -65.92 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.27 Total: 16.58 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 2.99 Total: -20.95 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -1.62 Total: -81.38 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.53 3.61 -65.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.671 kcal (2) G-P(sol) polarization free energy of solvation -69.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds