Wall clock time and date at job start Mon Mar 30 2020 03:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 119.99658 * 2 1 4 4 N 1.34769 * 120.00237 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00173 * 5.40328 * 4 2 1 6 6 C 1.50700 * 109.47003 * 275.18681 * 5 4 2 7 7 H 1.07996 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99960 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99822 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00045 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47088 * 89.99969 * 10 8 6 12 12 H 1.48504 * 109.47060 * 210.00368 * 10 8 6 13 13 H 1.48506 * 109.46938 * 330.00028 * 10 8 6 14 14 C 1.46500 * 120.00046 * 185.39988 * 4 2 1 15 15 C 1.52996 * 109.47079 * 295.48412 * 14 4 2 16 16 C 1.52998 * 109.47129 * 180.02562 * 15 14 4 17 17 C 1.52997 * 109.47102 * 300.00063 * 16 15 14 18 18 C 1.52996 * 109.47180 * 59.99968 * 17 16 15 19 19 C 1.52997 * 109.47215 * 55.48514 * 14 4 2 20 20 H 1.09005 * 109.47230 * 264.75886 * 1 2 3 21 21 H 1.08999 * 109.47433 * 24.76037 * 1 2 3 22 22 H 1.09006 * 109.47385 * 144.75694 * 1 2 3 23 23 H 1.09006 * 109.47139 * 35.18235 * 5 4 2 24 24 H 1.08993 * 109.47667 * 155.18278 * 5 4 2 25 25 H 0.96996 * 119.99564 * 180.02562 * 9 8 6 26 26 H 1.09001 * 109.46950 * 175.48278 * 14 4 2 27 27 H 1.09006 * 109.47395 * 299.99422 * 15 14 4 28 28 H 1.08991 * 109.47346 * 60.00121 * 15 14 4 29 29 H 1.09001 * 109.47755 * 179.97438 * 16 15 14 30 30 H 1.09001 * 109.47538 * 59.99795 * 16 15 14 31 31 H 1.09001 * 109.47423 * 300.00040 * 17 16 15 32 32 H 1.09000 * 109.47298 * 180.02562 * 17 16 15 33 33 H 1.09007 * 109.47275 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47339 * 60.00019 * 18 17 16 35 35 H 1.09001 * 109.46969 * 299.99752 * 19 14 4 36 36 H 1.09000 * 109.47039 * 60.00128 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4533 -2.4331 -0.1184 6 6 0.9775 -2.8688 1.2435 7 1 1.1956 -2.2635 2.1109 8 6 0.2637 -4.0404 1.3822 9 7 -0.0015 -4.7778 0.3259 10 14 -0.3267 -4.5801 3.0702 11 1 -1.6774 -4.0182 3.3251 12 1 -0.3895 -6.0629 3.1219 13 1 0.6175 -4.0883 4.1055 14 6 3.6410 -1.1698 0.1199 15 6 4.2542 -0.4901 -1.1060 16 6 5.7791 -0.4935 -0.9816 17 6 6.1894 0.2662 0.2814 18 6 5.5763 -0.4135 1.5073 19 6 4.0508 -0.4097 1.3829 20 1 -0.3634 -0.0939 1.0234 21 1 -0.3634 0.9332 -0.4304 22 1 -0.3634 -0.8393 -0.5930 23 1 0.5953 -2.2987 -0.7771 24 1 2.1140 -3.1944 -0.5331 25 1 -0.5039 -5.6017 0.4234 26 1 3.9985 -2.1976 0.1824 27 1 3.9623 -1.0317 -2.0058 28 1 3.8967 0.5376 -1.1684 29 1 6.2161 -0.0097 -1.8551 30 1 6.1363 -1.5214 -0.9194 31 1 5.8323 1.2942 0.2193 32 1 7.2759 0.2642 0.3698 33 1 5.8690 0.1275 2.4072 34 1 5.9334 -1.4414 1.5695 35 1 3.6933 0.6181 1.3204 36 1 3.6140 -0.8940 2.2562 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075597054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:15 Heat of formation + Delta-G solvation = -63.712816 kcal Electronic energy + Delta-G solvation = -16438.976158 eV Core-core repulsion = 13921.955634 eV Total energy + Delta-G solvation = -2517.020523 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56407 -37.06903 -34.65770 -32.50631 -30.35277 -30.27621 -28.03415 -26.63553 -22.93961 -22.16479 -22.15935 -19.60828 -18.07697 -16.57689 -15.94568 -15.52753 -14.46926 -14.41718 -14.20056 -13.79554 -13.60107 -12.95427 -12.50758 -12.22377 -12.01413 -11.85287 -11.80134 -11.45221 -11.29584 -11.02591 -10.95208 -10.65088 -10.62332 -10.43624 -10.20406 -9.92859 -9.70983 -9.56451 -8.73697 -8.52160 -7.61842 -6.17632 -4.24782 3.22260 3.29656 3.32731 3.50930 4.03674 4.34479 5.06265 5.14807 5.15249 5.25113 5.49041 5.65898 5.80710 5.87500 5.90333 5.95708 5.98161 6.04533 6.14481 6.22429 6.30249 6.38770 6.44812 6.55031 6.63400 6.67924 6.81987 6.85678 6.93599 7.24074 7.65097 7.79043 8.07794 8.43548 8.82697 9.12612 9.43318 10.88940 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029508 B = 0.008526 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.675289 B = 3283.402951 C = 3609.566314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.515 3.485 3 O -0.580 6.580 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.534 4.534 7 H 0.060 0.940 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.158 3.842 15 C -0.135 4.135 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.135 4.135 20 H 0.089 0.911 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.038 0.962 24 H 0.035 0.965 25 H 0.265 0.735 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.812 5.641 -0.844 8.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.305 3.695 3 O -0.463 6.463 4 N -0.324 5.324 5 C 0.117 3.883 6 C -0.572 4.572 7 H 0.079 0.921 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.054 3.946 15 C -0.173 4.173 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.173 4.173 20 H 0.107 0.893 21 H 0.089 0.911 22 H 0.105 0.895 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.017 5.957 -0.911 9.250 hybrid contribution -0.499 -0.703 0.963 1.293 sum 6.518 5.254 0.052 8.372 Atomic orbital electron populations 1.21852 0.92798 1.03228 1.04699 1.20595 0.90490 0.83114 0.75333 1.90524 1.70858 1.31948 1.52955 1.48352 1.05995 1.08024 1.70030 1.19463 0.92060 0.79385 0.97343 1.21509 1.35040 1.06990 0.93710 0.92129 1.24952 0.95773 0.96205 0.96983 1.69926 1.39734 1.14548 1.28901 0.86526 0.79220 0.77773 0.84145 1.20492 1.21111 1.19838 1.20836 0.80411 0.99218 0.94090 1.21966 0.94576 1.02954 0.97813 1.21466 0.96066 1.00172 0.97407 1.21522 0.99163 0.99793 0.95018 1.21480 0.95869 1.00373 0.97406 1.21940 0.94839 1.02902 0.97666 0.89255 0.91068 0.89496 0.94439 0.94710 0.92562 0.90212 0.92584 0.90046 0.92457 0.92319 0.91997 0.92714 0.92457 0.92324 0.89803 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.49 36.00 0.34 -2.75 16 2 C 0.52 10.87 7.14 -10.99 -0.08 10.80 16 3 O -0.58 -12.99 13.34 5.56 0.07 -12.91 16 4 N -0.59 -12.64 2.42 -167.48 -0.41 -13.04 16 5 C 0.24 5.64 4.89 -5.19 -0.03 5.61 16 6 C -0.53 -13.78 9.11 -34.44 -0.31 -14.09 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.68 5.46 -17.81 -0.10 1.58 16 9 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 10 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 C 0.16 3.01 2.53 -67.93 -0.17 2.84 16 15 C -0.13 -2.29 5.20 -26.73 -0.14 -2.43 16 16 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 17 C -0.12 -1.58 5.92 -26.73 -0.16 -1.73 16 18 C -0.11 -1.64 5.92 -26.71 -0.16 -1.80 16 19 C -0.14 -2.44 5.06 -26.71 -0.14 -2.57 16 20 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 21 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 22 H 0.09 1.64 6.10 -51.93 -0.32 1.33 16 23 H 0.04 0.92 6.20 -51.93 -0.32 0.60 16 24 H 0.03 0.87 7.85 -51.93 -0.41 0.46 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.08 1.54 7.77 -51.93 -0.40 1.14 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.54 6.32 -51.93 -0.33 1.21 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.66 6.03 -51.93 -0.31 1.35 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 284.37 15.07 4.29 4.29 Total: -1.00 -27.73 284.37 -7.29 -35.01 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.86 Total: 1.25 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.09 Total: -6.28 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.33 Total: -36.84 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.73 -7.29 -35.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.699 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds