Wall clock time and date at job start Mon Mar 30 2020 03:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 119.99658 * 2 1 4 4 N 1.34769 * 120.00237 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00173 * 5.40328 * 4 2 1 6 6 C 1.50700 * 109.47003 * 275.18681 * 5 4 2 7 7 H 1.07996 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99960 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99822 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00045 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47088 * 89.99969 * 10 8 6 12 12 H 1.48504 * 109.47060 * 210.00368 * 10 8 6 13 13 H 1.48506 * 109.46938 * 330.00028 * 10 8 6 14 14 C 1.46500 * 120.00046 * 185.39988 * 4 2 1 15 15 C 1.52996 * 109.47079 * 295.48412 * 14 4 2 16 16 C 1.52998 * 109.47129 * 180.02562 * 15 14 4 17 17 C 1.52997 * 109.47102 * 300.00063 * 16 15 14 18 18 C 1.52996 * 109.47180 * 59.99968 * 17 16 15 19 19 C 1.52997 * 109.47215 * 55.48514 * 14 4 2 20 20 H 1.09005 * 109.47230 * 264.75886 * 1 2 3 21 21 H 1.08999 * 109.47433 * 24.76037 * 1 2 3 22 22 H 1.09006 * 109.47385 * 144.75694 * 1 2 3 23 23 H 1.09006 * 109.47139 * 35.18235 * 5 4 2 24 24 H 1.08993 * 109.47667 * 155.18278 * 5 4 2 25 25 H 0.96996 * 119.99564 * 180.02562 * 9 8 6 26 26 H 1.09001 * 109.46950 * 175.48278 * 14 4 2 27 27 H 1.09006 * 109.47395 * 299.99422 * 15 14 4 28 28 H 1.08991 * 109.47346 * 60.00121 * 15 14 4 29 29 H 1.09001 * 109.47755 * 179.97438 * 16 15 14 30 30 H 1.09001 * 109.47538 * 59.99795 * 16 15 14 31 31 H 1.09001 * 109.47423 * 300.00040 * 17 16 15 32 32 H 1.09000 * 109.47298 * 180.02562 * 17 16 15 33 33 H 1.09007 * 109.47275 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47339 * 60.00019 * 18 17 16 35 35 H 1.09001 * 109.46969 * 299.99752 * 19 14 4 36 36 H 1.09000 * 109.47039 * 60.00128 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4533 -2.4331 -0.1184 6 6 0.9775 -2.8688 1.2435 7 1 1.1956 -2.2635 2.1109 8 6 0.2637 -4.0404 1.3822 9 7 -0.0015 -4.7778 0.3259 10 14 -0.3267 -4.5801 3.0702 11 1 -1.6774 -4.0182 3.3251 12 1 -0.3895 -6.0629 3.1219 13 1 0.6175 -4.0883 4.1055 14 6 3.6410 -1.1698 0.1199 15 6 4.2542 -0.4901 -1.1060 16 6 5.7791 -0.4935 -0.9816 17 6 6.1894 0.2662 0.2814 18 6 5.5763 -0.4135 1.5073 19 6 4.0508 -0.4097 1.3829 20 1 -0.3634 -0.0939 1.0234 21 1 -0.3634 0.9332 -0.4304 22 1 -0.3634 -0.8393 -0.5930 23 1 0.5953 -2.2987 -0.7771 24 1 2.1140 -3.1944 -0.5331 25 1 -0.5039 -5.6017 0.4234 26 1 3.9985 -2.1976 0.1824 27 1 3.9623 -1.0317 -2.0058 28 1 3.8967 0.5376 -1.1684 29 1 6.2161 -0.0097 -1.8551 30 1 6.1363 -1.5214 -0.9194 31 1 5.8323 1.2942 0.2193 32 1 7.2759 0.2642 0.3698 33 1 5.8690 0.1275 2.4072 34 1 5.9334 -1.4414 1.5695 35 1 3.6933 0.6181 1.3204 36 1 3.6140 -0.8940 2.2562 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075597054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:15 Heat of formation + Delta-G solvation = -78.217138 kcal Electronic energy + Delta-G solvation = -16439.605112 eV Core-core repulsion = 13921.955634 eV Total energy + Delta-G solvation = -2517.649478 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17003 -38.49015 -36.42901 -34.43011 -31.75855 -31.63621 -29.70670 -28.40498 -24.87173 -23.56791 -23.46561 -20.91362 -19.73109 -18.59618 -17.52097 -17.26324 -16.26634 -15.92813 -15.75307 -15.12529 -14.82358 -14.50263 -14.31745 -13.82484 -13.56808 -13.48575 -13.09555 -13.08444 -12.85677 -12.80648 -12.64582 -12.18387 -12.09996 -11.99830 -11.69154 -11.54915 -11.12629 -11.05238 -10.62078 -10.33196 -9.36814 -8.19617 -6.34166 1.41255 1.43330 1.52526 1.81521 2.34153 2.48598 3.10254 3.71988 3.89810 4.02451 4.11196 4.34037 4.38848 4.48806 4.58744 4.63132 4.66028 4.68152 4.69600 4.84723 4.98421 5.04763 5.13398 5.18446 5.27192 5.29310 5.32513 5.33108 5.45013 5.54406 5.69679 5.97714 6.07615 6.61211 6.86245 7.33688 7.46188 8.85754 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029508 B = 0.008526 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.675289 B = 3283.402951 C = 3609.566314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.507 3.493 3 O -0.594 6.594 4 N -0.598 5.598 5 C 0.252 3.748 6 C -0.540 4.540 7 H 0.052 0.948 8 C 0.021 3.979 9 N -0.921 5.921 10 Si 0.956 3.044 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.149 3.851 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.128 4.128 20 H 0.090 0.910 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.030 0.970 24 H 0.018 0.982 25 H 0.268 0.732 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.710 5.854 -0.306 9.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.298 3.702 3 O -0.477 6.477 4 N -0.328 5.328 5 C 0.131 3.869 6 C -0.579 4.579 7 H 0.070 0.930 8 C -0.180 4.180 9 N -0.561 5.561 10 Si 0.782 3.218 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.198 1.198 14 C 0.046 3.954 15 C -0.165 4.165 16 C -0.147 4.147 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.166 4.166 20 H 0.109 0.891 21 H 0.113 0.887 22 H 0.099 0.901 23 H 0.048 0.952 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.925 6.182 -0.374 10.058 hybrid contribution -0.776 -0.753 0.773 1.329 sum 7.149 5.430 0.399 8.986 Atomic orbital electron populations 1.21835 0.90974 1.04307 1.04853 1.21022 0.91531 0.82750 0.74935 1.90515 1.71445 1.32183 1.53589 1.48382 1.07082 1.07289 1.70043 1.19124 0.91506 0.79962 0.96294 1.21648 1.35078 1.07063 0.94103 0.92999 1.25654 0.95856 0.96229 1.00223 1.70014 1.40379 1.14971 1.30687 0.85579 0.78837 0.77384 0.80029 1.19744 1.20720 1.19773 1.21067 0.79291 0.99324 0.95739 1.21873 0.97036 1.01136 0.96470 1.21477 0.93324 1.01231 0.98677 1.21513 1.00851 0.98889 0.93865 1.21483 0.92923 1.01418 0.98903 1.21846 0.97610 1.01004 0.96186 0.89114 0.88661 0.90055 0.95216 0.96412 0.92340 0.90829 0.93031 0.92017 0.90486 0.91318 0.92842 0.89708 0.90955 0.91476 0.91762 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.90 9.49 71.23 0.68 -5.22 16 2 C 0.51 21.54 7.14 87.66 0.63 22.16 16 3 O -0.59 -26.66 13.34 -3.02 -0.04 -26.70 16 4 N -0.60 -25.83 2.42 -802.17 -1.94 -27.77 16 5 C 0.25 12.19 4.89 85.63 0.42 12.61 16 6 C -0.54 -28.07 9.11 25.60 0.23 -27.84 16 7 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 8 C 0.02 1.08 5.46 84.66 0.46 1.54 16 9 N -0.92 -50.68 13.29 21.45 0.28 -50.40 16 10 Si 0.96 41.70 29.54 68.60 2.03 43.73 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.15 5.69 2.53 44.99 0.11 5.80 16 15 C -0.13 -4.25 5.20 30.59 0.16 -4.09 16 16 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 17 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 18 C -0.11 -2.97 5.92 30.61 0.18 -2.79 16 19 C -0.13 -4.61 5.06 30.61 0.16 -4.45 16 20 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 21 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 22 H 0.08 3.07 6.10 -2.38 -0.01 3.06 16 23 H 0.03 1.49 6.20 -2.38 -0.01 1.47 16 24 H 0.02 0.92 7.85 -2.39 -0.02 0.90 16 25 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 26 H 0.07 2.87 7.77 -2.39 -0.02 2.85 16 27 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.06 2.32 6.32 -2.39 -0.02 2.31 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.06 2.56 6.03 -2.39 -0.01 2.55 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -58.32 284.37 4.76 -53.57 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.04 Total: 15.02 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 3.39 Total: -7.45 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.66 Total: -78.17 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.04 Total: -26.70 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -58.32 4.76 -53.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.652 kcal (2) G-P(sol) polarization free energy of solvation -58.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds