Wall clock time and date at job start Mon Mar 30 2020 03:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00391 * 2 1 4 4 O 1.42898 * 109.47065 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47415 * 120.00043 * 3 2 1 6 6 C 1.52994 * 109.47479 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47139 * 300.00018 * 6 5 3 8 8 C 1.52995 * 109.47109 * 59.99999 * 7 6 5 9 9 C 1.52999 * 109.47117 * 240.00008 * 3 2 1 10 10 H 1.09000 * 109.47206 * 59.99821 * 9 3 2 11 11 N 1.46498 * 109.47104 * 299.99657 * 9 3 2 12 12 C 1.46507 * 119.99661 * 117.57560 * 11 9 3 13 13 C 1.36938 * 120.00211 * 297.57577 * 11 9 3 14 14 H 1.07993 * 119.99701 * 5.73184 * 13 11 9 15 15 C 1.38814 * 119.99828 * 185.73445 * 13 11 9 16 16 N 1.31620 * 120.00034 * 351.17595 * 15 13 11 17 17 Si 1.86799 * 119.99898 * 171.18224 * 15 13 11 18 18 H 1.48510 * 109.46985 * 59.99514 * 17 15 13 19 19 H 1.48495 * 109.47235 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47085 * 299.99819 * 17 15 13 21 21 H 1.07999 * 120.00540 * 180.02562 * 1 2 3 22 22 H 1.07999 * 119.99676 * 359.97438 * 1 2 3 23 23 H 1.08007 * 119.99974 * 180.02562 * 2 1 3 24 24 H 0.96696 * 114.00402 * 59.99755 * 4 3 2 25 25 H 1.09003 * 109.46727 * 300.00153 * 5 3 2 26 26 H 1.09003 * 109.47573 * 59.99951 * 5 3 2 27 27 H 1.09007 * 109.47214 * 60.00032 * 6 5 3 28 28 H 1.09000 * 109.47293 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.46957 * 179.97438 * 7 6 5 30 30 H 1.08993 * 109.47167 * 299.99822 * 7 6 5 31 31 H 1.09003 * 109.47773 * 59.99898 * 8 7 6 32 32 H 1.08994 * 109.47433 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47427 * 358.90710 * 12 11 9 34 34 H 1.09003 * 109.46986 * 118.91179 * 12 11 9 35 35 H 1.09006 * 109.46723 * 238.90661 * 12 11 9 36 36 H 0.97001 * 119.99505 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 1.1350 2.3912 0.0006 5 6 2.9432 1.3861 1.2492 6 6 3.7087 2.7107 1.2489 7 6 4.5884 2.7911 -0.0003 8 6 3.7088 2.7101 -1.2495 9 6 2.9432 1.3860 -1.2492 10 1 2.3165 1.3283 -2.1392 11 7 3.8951 0.2725 -1.2492 12 6 3.8540 -0.7264 -2.3202 13 6 4.8234 0.1652 -0.2482 14 1 4.7954 0.8464 0.5894 15 6 5.8003 -0.8190 -0.3101 16 7 5.7341 -1.7548 -1.2332 17 14 7.2088 -0.8154 0.9169 18 1 6.6658 -0.9348 2.2941 19 1 8.1099 -1.9626 0.6395 20 1 7.9698 0.4536 0.7932 21 1 -0.5401 -0.9352 0.0004 22 1 -0.5399 0.9353 0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 0.5440 2.4030 0.7658 25 1 2.3165 1.3284 2.1392 26 1 3.6515 0.5575 1.2493 27 1 3.0008 3.5396 1.2487 28 1 4.3351 2.7686 2.1391 29 1 5.1335 3.7350 -0.0008 30 1 5.2963 1.9623 -0.0001 31 1 3.0008 3.5389 -1.2499 32 1 4.3355 2.7669 -2.1395 33 1 3.0436 -0.4875 -3.0089 34 1 4.8018 -0.7212 -2.8585 35 1 3.6859 -1.7137 -1.8898 36 1 6.4165 -2.4428 -1.2762 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075597076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:28 Heat of formation + Delta-G solvation = 33.217820 kcal Electronic energy + Delta-G solvation = -17330.718496 eV Core-core repulsion = 14817.901200 eV Total energy + Delta-G solvation = -2512.817295 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.63748 -35.80483 -33.63627 -32.17321 -31.27824 -29.19249 -27.87998 -26.08096 -22.81342 -22.15250 -20.98005 -19.10244 -18.77713 -17.06524 -15.92352 -15.61601 -14.62777 -14.22143 -13.67424 -13.23544 -13.08702 -12.79123 -12.12229 -12.02648 -11.73495 -11.41900 -11.33506 -11.10776 -10.80541 -10.71679 -10.60101 -10.45129 -10.18367 -10.11742 -9.85237 -9.49830 -9.15762 -8.68961 -8.48699 -8.13753 -6.88433 -5.68118 -3.05242 2.82471 3.35654 3.41822 3.43230 4.42438 4.79951 5.31694 5.36398 5.54226 5.62087 5.78632 5.87306 5.92961 6.10694 6.21779 6.30233 6.34592 6.47367 6.50116 6.60816 6.77395 6.82413 6.95122 6.97734 7.06817 7.16656 7.20800 7.34421 7.47761 7.68226 7.73254 7.93785 8.22237 8.36583 9.24586 9.89883 10.34790 11.31387 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.012641 C = 0.011052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.227740 B = 2214.430540 C = 2532.829157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.137 4.137 3 C 0.147 3.853 4 O -0.561 6.561 5 C -0.169 4.169 6 C -0.105 4.105 7 C -0.158 4.158 8 C -0.111 4.111 9 C 0.202 3.798 10 H 0.056 0.944 11 N -0.597 5.597 12 C 0.170 3.830 13 C -0.271 4.271 14 H 0.125 0.875 15 C -0.003 4.003 16 N -0.910 5.910 17 Si 0.894 3.106 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.119 0.881 24 H 0.361 0.639 25 H 0.038 0.962 26 H 0.131 0.869 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.127 0.873 31 H 0.049 0.951 32 H 0.052 0.948 33 H -0.010 1.010 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 5.266 2.979 8.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.155 4.155 3 C 0.104 3.896 4 O -0.366 6.366 5 C -0.206 4.206 6 C -0.143 4.143 7 C -0.194 4.194 8 C -0.150 4.150 9 C 0.092 3.908 10 H 0.074 0.926 11 N -0.321 5.321 12 C 0.026 3.974 13 C -0.399 4.399 14 H 0.141 0.859 15 C -0.200 4.200 16 N -0.557 5.557 17 Si 0.724 3.276 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 H 0.107 0.893 22 H 0.113 0.887 23 H 0.137 0.863 24 H 0.207 0.793 25 H 0.057 0.943 26 H 0.148 0.852 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.145 0.855 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.009 0.991 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.622 5.229 2.357 8.031 hybrid contribution 0.384 -0.284 1.204 1.295 sum -5.237 4.945 3.561 8.035 Atomic orbital electron populations 1.23598 0.96171 1.01040 1.05559 1.23707 0.95764 1.00283 0.95748 1.20950 0.87586 0.82621 0.98404 1.86530 1.50838 1.50531 1.48683 1.22878 1.00644 1.01666 0.95431 1.21324 0.98069 0.97092 0.97803 1.22452 1.00072 1.03135 0.93785 1.21721 0.98112 0.97377 0.97833 1.19966 0.89298 0.88606 0.92904 0.92602 1.43981 1.35079 1.25572 1.27514 1.21088 0.96296 0.91730 0.88271 1.20209 1.04803 1.13419 1.01433 0.85878 1.24950 0.99062 0.97660 0.98376 1.70237 1.34821 1.15222 1.35426 0.86472 0.83042 0.77358 0.80722 1.20966 1.21603 1.20867 0.89330 0.88724 0.86260 0.79299 0.94329 0.85152 0.93167 0.93430 0.94736 0.85514 0.93253 0.92954 0.99140 0.94022 0.93921 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.60 13.93 29.02 0.40 -3.20 16 2 C -0.14 -2.54 8.39 -36.03 -0.30 -2.84 16 3 C 0.15 2.76 0.76 -91.77 -0.07 2.69 16 4 O -0.56 -9.57 10.60 -35.23 -0.37 -9.94 16 5 C -0.17 -3.17 4.52 -26.74 -0.12 -3.29 16 6 C -0.11 -1.88 5.44 -26.73 -0.15 -2.03 16 7 C -0.16 -3.08 5.54 -26.73 -0.15 -3.22 16 8 C -0.11 -2.21 5.46 -26.76 -0.15 -2.35 16 9 C 0.20 4.22 2.47 -67.96 -0.17 4.06 16 10 H 0.06 1.19 7.55 -51.93 -0.39 0.80 16 11 N -0.60 -14.14 2.40 -173.51 -0.42 -14.56 16 12 C 0.17 4.16 9.01 59.85 0.54 4.70 16 13 C -0.27 -6.72 5.55 -15.06 -0.08 -6.80 16 14 H 0.12 2.89 2.28 -52.49 -0.12 2.77 16 15 C 0.00 -0.09 5.44 -17.43 -0.09 -0.18 16 16 N -0.91 -25.28 9.48 55.49 0.53 -24.75 16 17 Si 0.89 20.86 29.56 -169.99 -5.03 15.84 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H 0.09 1.29 8.06 -52.49 -0.42 0.87 16 22 H 0.09 1.38 6.41 -52.49 -0.34 1.04 16 23 H 0.12 2.49 8.00 -52.48 -0.42 2.07 16 24 H 0.36 4.91 8.05 45.56 0.37 5.28 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.13 2.81 4.26 -51.93 -0.22 2.59 16 27 H 0.05 0.85 7.68 -51.93 -0.40 0.45 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.13 2.81 4.05 -51.93 -0.21 2.60 16 31 H 0.05 0.93 7.68 -51.93 -0.40 0.54 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H -0.01 -0.22 7.55 -51.93 -0.39 -0.62 16 34 H 0.04 1.10 7.03 -51.93 -0.36 0.74 16 35 H 0.04 1.12 7.07 -51.93 -0.37 0.75 16 36 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 266.46 15.07 4.02 4.02 Total: -1.00 -26.69 266.46 -6.11 -32.80 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.50 Total: 9.07 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.34 Total: -12.48 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.11 Total: -39.31 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.37 Total: -9.94 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.69 -6.11 -32.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.018 kcal (2) G-P(sol) polarization free energy of solvation -26.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds