Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00391 * 2 1 4 4 O 1.42898 * 109.47065 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47415 * 120.00043 * 3 2 1 6 6 C 1.52994 * 109.47479 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47139 * 300.00018 * 6 5 3 8 8 C 1.52995 * 109.47109 * 59.99999 * 7 6 5 9 9 C 1.52999 * 109.47117 * 240.00008 * 3 2 1 10 10 H 1.09000 * 109.47206 * 59.99821 * 9 3 2 11 11 N 1.46498 * 109.47104 * 299.99657 * 9 3 2 12 12 C 1.46507 * 119.99661 * 117.57560 * 11 9 3 13 13 C 1.36938 * 120.00211 * 297.57577 * 11 9 3 14 14 H 1.07993 * 119.99701 * 5.73184 * 13 11 9 15 15 C 1.38814 * 119.99828 * 185.73445 * 13 11 9 16 16 N 1.31620 * 120.00034 * 351.17595 * 15 13 11 17 17 Si 1.86799 * 119.99898 * 171.18224 * 15 13 11 18 18 H 1.48510 * 109.46985 * 59.99514 * 17 15 13 19 19 H 1.48495 * 109.47235 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47085 * 299.99819 * 17 15 13 21 21 H 1.07999 * 120.00540 * 180.02562 * 1 2 3 22 22 H 1.07999 * 119.99676 * 359.97438 * 1 2 3 23 23 H 1.08007 * 119.99974 * 180.02562 * 2 1 3 24 24 H 0.96696 * 114.00402 * 59.99755 * 4 3 2 25 25 H 1.09003 * 109.46727 * 300.00153 * 5 3 2 26 26 H 1.09003 * 109.47573 * 59.99951 * 5 3 2 27 27 H 1.09007 * 109.47214 * 60.00032 * 6 5 3 28 28 H 1.09000 * 109.47293 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.46957 * 179.97438 * 7 6 5 30 30 H 1.08993 * 109.47167 * 299.99822 * 7 6 5 31 31 H 1.09003 * 109.47773 * 59.99898 * 8 7 6 32 32 H 1.08994 * 109.47433 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47427 * 358.90710 * 12 11 9 34 34 H 1.09003 * 109.46986 * 118.91179 * 12 11 9 35 35 H 1.09006 * 109.46723 * 238.90661 * 12 11 9 36 36 H 0.97001 * 119.99505 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 1.1350 2.3912 0.0006 5 6 2.9432 1.3861 1.2492 6 6 3.7087 2.7107 1.2489 7 6 4.5884 2.7911 -0.0003 8 6 3.7088 2.7101 -1.2495 9 6 2.9432 1.3860 -1.2492 10 1 2.3165 1.3283 -2.1392 11 7 3.8951 0.2725 -1.2492 12 6 3.8540 -0.7264 -2.3202 13 6 4.8234 0.1652 -0.2482 14 1 4.7954 0.8464 0.5894 15 6 5.8003 -0.8190 -0.3101 16 7 5.7341 -1.7548 -1.2332 17 14 7.2088 -0.8154 0.9169 18 1 6.6658 -0.9348 2.2941 19 1 8.1099 -1.9626 0.6395 20 1 7.9698 0.4536 0.7932 21 1 -0.5401 -0.9352 0.0004 22 1 -0.5399 0.9353 0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 0.5440 2.4030 0.7658 25 1 2.3165 1.3284 2.1392 26 1 3.6515 0.5575 1.2493 27 1 3.0008 3.5396 1.2487 28 1 4.3351 2.7686 2.1391 29 1 5.1335 3.7350 -0.0008 30 1 5.2963 1.9623 -0.0001 31 1 3.0008 3.5389 -1.2499 32 1 4.3355 2.7669 -2.1395 33 1 3.0436 -0.4875 -3.0089 34 1 4.8018 -0.7212 -2.8585 35 1 3.6859 -1.7137 -1.8898 36 1 6.4165 -2.4428 -1.2762 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075597076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = 16.823520 kcal Electronic energy + Delta-G solvation = -17331.429406 eV Core-core repulsion = 14817.901200 eV Total energy + Delta-G solvation = -2513.528206 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20065 -37.38465 -35.32651 -33.63747 -33.01173 -30.81746 -29.48057 -28.03450 -24.55773 -23.64455 -22.68705 -20.58654 -20.36941 -18.86461 -17.34127 -17.13130 -16.41540 -15.85861 -15.26034 -15.01814 -14.73200 -14.36373 -13.85898 -13.67648 -13.21153 -13.07450 -12.99268 -12.78563 -12.61931 -12.35962 -12.21649 -12.09132 -11.98642 -11.88353 -11.40847 -10.99401 -10.64966 -10.48228 -10.04342 -9.90072 -8.81092 -7.66130 -5.03257 1.45878 1.49436 1.51887 1.55933 2.54797 3.26323 3.42825 3.91269 4.00555 4.05110 4.18371 4.42626 4.52440 4.60750 4.69670 4.79036 4.83060 4.84995 4.99320 5.08622 5.16686 5.23541 5.42095 5.44534 5.52379 5.57059 5.67855 5.70314 5.82528 5.90716 5.96266 5.97685 6.38999 6.99957 7.25945 7.98662 8.40152 9.33862 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.012641 C = 0.011052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.227740 B = 2214.430540 C = 2532.829157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.171 4.171 3 C 0.161 3.839 4 O -0.560 6.560 5 C -0.167 4.167 6 C -0.101 4.101 7 C -0.157 4.157 8 C -0.107 4.107 9 C 0.192 3.808 10 H 0.049 0.951 11 N -0.606 5.606 12 C 0.187 3.813 13 C -0.250 4.250 14 H 0.142 0.858 15 C -0.068 4.068 16 N -0.948 5.948 17 Si 0.947 3.053 18 H -0.274 1.274 19 H -0.304 1.304 20 H -0.277 1.277 21 H 0.102 0.898 22 H 0.117 0.883 23 H 0.086 0.914 24 H 0.381 0.619 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.010 0.990 34 H 0.014 0.986 35 H 0.017 0.983 36 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 7.386 4.405 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.190 4.190 3 C 0.118 3.882 4 O -0.367 6.367 5 C -0.204 4.204 6 C -0.138 4.138 7 C -0.194 4.194 8 C -0.146 4.146 9 C 0.085 3.915 10 H 0.067 0.933 11 N -0.330 5.330 12 C 0.043 3.957 13 C -0.378 4.378 14 H 0.159 0.841 15 C -0.260 4.260 16 N -0.598 5.598 17 Si 0.777 3.223 18 H -0.200 1.200 19 H -0.231 1.231 20 H -0.203 1.203 21 H 0.120 0.880 22 H 0.135 0.865 23 H 0.104 0.896 24 H 0.230 0.770 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.367 7.394 3.813 11.113 hybrid contribution 0.731 -0.854 0.748 1.350 sum -6.636 6.540 4.561 10.374 Atomic orbital electron populations 1.23850 0.95084 1.02741 1.01164 1.23468 0.96713 0.98945 0.99841 1.20466 0.87698 0.83226 0.96810 1.86474 1.50844 1.49377 1.50006 1.22747 1.00382 1.00830 0.96466 1.21314 0.98193 0.97013 0.97313 1.22326 0.99784 1.02743 0.94551 1.21663 0.98192 0.97092 0.97667 1.20143 0.89239 0.88038 0.94119 0.93270 1.44124 1.35798 1.26086 1.26952 1.20733 0.95422 0.91058 0.88513 1.20741 1.03497 1.12115 1.01414 0.84126 1.25611 1.01594 0.98356 1.00473 1.70433 1.35360 1.16274 1.37732 0.85600 0.80583 0.76729 0.79411 1.20006 1.23122 1.20308 0.87981 0.86476 0.89602 0.77014 0.92111 0.88447 0.91395 0.92064 0.92934 0.88578 0.91600 0.94207 0.97174 0.96787 0.96486 0.95185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.44 13.93 67.78 0.94 -4.50 16 2 C -0.17 -6.07 8.39 25.65 0.22 -5.85 16 3 C 0.16 5.64 0.76 -11.54 -0.01 5.63 16 4 O -0.56 -16.67 10.60 -148.98 -1.58 -18.25 16 5 C -0.17 -5.82 4.52 30.59 0.14 -5.68 16 6 C -0.10 -3.24 5.44 30.59 0.17 -3.07 16 7 C -0.16 -5.75 5.54 30.59 0.17 -5.58 16 8 C -0.11 -4.04 5.46 30.58 0.17 -3.88 16 9 C 0.19 7.84 2.47 44.98 0.11 7.95 16 10 H 0.05 2.04 7.55 -2.39 -0.02 2.03 16 11 N -0.61 -29.00 2.40 -702.85 -1.69 -30.69 16 12 C 0.19 9.49 9.01 127.77 1.15 10.65 16 13 C -0.25 -12.48 5.55 84.03 0.47 -12.01 16 14 H 0.14 6.50 2.28 -2.91 -0.01 6.50 16 15 C -0.07 -3.67 5.44 84.86 0.46 -3.20 16 16 N -0.95 -55.12 9.48 21.65 0.21 -54.92 16 17 Si 0.95 43.80 29.56 68.60 2.03 45.83 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H 0.10 2.63 8.06 -2.91 -0.02 2.60 16 22 H 0.12 2.82 6.41 -2.91 -0.02 2.80 16 23 H 0.09 3.64 8.00 -2.91 -0.02 3.62 16 24 H 0.38 8.35 8.05 -74.06 -0.60 7.75 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.10 4.09 4.26 -2.39 -0.01 4.08 16 27 H 0.07 1.98 7.68 -2.38 -0.02 1.96 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.10 4.15 4.05 -2.39 -0.01 4.14 16 31 H 0.07 2.28 7.68 -2.39 -0.02 2.26 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.01 0.44 7.55 -2.39 -0.02 0.43 16 34 H 0.01 0.76 7.03 -2.39 -0.02 0.75 16 35 H 0.02 0.93 7.07 -2.38 -0.02 0.91 16 36 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -58.29 266.46 3.43 -54.86 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.48 Total: 22.71 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 3.98 Total: -19.55 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -1.48 Total: -85.60 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.58 Total: -18.25 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -58.29 3.43 -54.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.686 kcal (2) G-P(sol) polarization free energy of solvation -58.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds