Wall clock time and date at job start Mon Mar 30 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99880 * 2 1 4 4 O 1.42896 * 109.47117 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47423 * 119.99653 * 3 2 1 6 6 C 1.52998 * 109.47432 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47211 * 300.00068 * 6 5 3 8 8 C 1.53008 * 109.47009 * 59.99774 * 7 6 5 9 9 C 1.52997 * 109.47019 * 239.99598 * 3 2 1 10 10 H 1.08998 * 109.47238 * 300.00034 * 9 3 2 11 11 N 1.46497 * 109.47097 * 60.00171 * 9 3 2 12 12 C 1.46496 * 120.00309 * 64.27316 * 11 9 3 13 13 C 1.36939 * 120.00148 * 244.27728 * 11 9 3 14 14 H 1.08006 * 119.99634 * 338.63061 * 13 11 9 15 15 C 1.38814 * 120.00449 * 158.63276 * 13 11 9 16 16 N 1.31616 * 119.99906 * 346.46516 * 15 13 11 17 17 Si 1.86805 * 119.99916 * 166.46308 * 15 13 11 18 18 H 1.48498 * 109.47150 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46830 * 120.00204 * 17 15 13 20 20 H 1.48497 * 109.47039 * 239.99796 * 17 15 13 21 21 H 1.08004 * 119.99720 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00090 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00593 * 179.97438 * 2 1 3 24 24 H 0.96703 * 114.00134 * 60.00110 * 4 3 2 25 25 H 1.09012 * 109.47084 * 59.99804 * 5 3 2 26 26 H 1.09000 * 109.47075 * 300.00536 * 5 3 2 27 27 H 1.09002 * 109.47209 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.46943 * 60.00154 * 6 5 3 29 29 H 1.08998 * 109.46938 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47238 * 299.99905 * 7 6 5 31 31 H 1.09007 * 109.46735 * 59.99971 * 8 7 6 32 32 H 1.08996 * 109.46650 * 179.97438 * 8 7 6 33 33 H 1.09005 * 109.47286 * 26.06281 * 12 11 9 34 34 H 1.09004 * 109.47745 * 146.06183 * 12 11 9 35 35 H 1.09000 * 109.47728 * 266.06397 * 12 11 9 36 36 H 0.96997 * 119.99918 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 1.1349 2.3912 -0.0006 5 6 2.9430 1.3863 1.2493 6 6 3.7085 2.7111 1.2489 7 6 4.5882 2.7915 -0.0002 8 6 3.7086 2.7103 -1.2496 9 6 2.9431 1.3861 -1.2492 10 1 3.6514 0.5577 -1.2491 11 7 2.1009 1.3085 -2.4454 12 6 1.1272 2.3665 -2.7256 13 6 2.2238 0.2469 -3.3016 14 1 3.1317 -0.3380 -3.3096 15 6 1.1816 -0.0775 -4.1591 16 7 -0.0103 0.4496 -3.9752 17 14 1.4708 -1.2621 -5.5743 18 1 2.8862 -1.7112 -5.5626 19 1 0.5772 -2.4388 -5.4253 20 1 1.1785 -0.5783 -6.8597 21 1 -0.5400 -0.9354 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8501 -0.9352 0.0004 24 1 0.5432 2.4034 0.7642 25 1 3.6514 0.5578 1.2493 26 1 2.3163 1.3285 2.1392 27 1 4.3354 2.7687 2.1387 28 1 3.0004 3.5398 1.2487 29 1 5.1332 3.7355 -0.0007 30 1 5.2962 1.9628 0.0000 31 1 3.0005 3.5391 -1.2498 32 1 4.3353 2.7681 -2.1395 33 1 1.4570 3.2961 -2.2615 34 1 1.0443 2.5080 -3.8032 35 1 0.1558 2.0830 -2.3206 36 1 -0.7385 0.2232 -4.5746 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075597077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:30 Heat of formation + Delta-G solvation = -11.894078 kcal Electronic energy + Delta-G solvation = -17069.804223 eV Core-core repulsion = 14555.030729 eV Total energy + Delta-G solvation = -2514.773494 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.22918 -35.03222 -34.48855 -31.93352 -31.19840 -29.09210 -27.84788 -25.68374 -23.01101 -22.31432 -20.64512 -19.04209 -18.73952 -16.56392 -15.99622 -15.47613 -14.67639 -14.23359 -14.01310 -13.44799 -13.20618 -12.62202 -12.33579 -11.92960 -11.83215 -11.45685 -11.31351 -10.94113 -10.73899 -10.70934 -10.47859 -10.37200 -10.19354 -10.09381 -9.88826 -9.60640 -9.50376 -9.06633 -8.42280 -8.34710 -6.54416 -5.55473 -2.98795 3.19356 3.43705 3.51101 3.52521 4.59037 4.92281 5.22158 5.22848 5.29629 5.55884 5.66942 5.76870 5.85760 5.94638 6.01912 6.07441 6.11467 6.18539 6.32739 6.45912 6.55117 6.61402 6.62583 6.74062 6.99849 7.14103 7.26522 7.40998 7.62558 7.67210 7.93204 8.13177 8.39247 8.55398 9.41238 10.06239 10.57009 11.47576 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034224 B = 0.010258 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.943298 B = 2728.793917 C = 3016.524853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.147 3.853 4 O -0.536 6.536 5 C -0.139 4.139 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.130 4.130 9 C 0.199 3.801 10 H 0.065 0.935 11 N -0.585 5.585 12 C 0.180 3.820 13 C -0.249 4.249 14 H 0.064 0.936 15 C 0.002 3.998 16 N -0.899 5.899 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.293 1.293 20 H -0.291 1.291 21 H 0.083 0.917 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.354 0.646 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.002 0.998 34 H 0.029 0.971 35 H 0.030 0.970 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 3.018 10.324 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.104 3.896 4 O -0.340 6.340 5 C -0.177 4.177 6 C -0.149 4.149 7 C -0.153 4.153 8 C -0.169 4.169 9 C 0.090 3.910 10 H 0.084 0.916 11 N -0.305 5.305 12 C 0.035 3.965 13 C -0.379 4.379 14 H 0.081 0.919 15 C -0.196 4.196 16 N -0.544 5.544 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.220 1.220 20 H -0.218 1.218 21 H 0.101 0.899 22 H 0.114 0.886 23 H 0.116 0.884 24 H 0.199 0.801 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.936 3.134 9.610 11.248 hybrid contribution -0.333 -1.057 -0.360 1.166 sum 4.602 2.076 9.249 10.538 Atomic orbital electron populations 1.23365 0.95966 1.00822 1.00891 1.23057 0.96328 0.97925 0.99887 1.21061 0.88701 0.84102 0.95737 1.86740 1.50209 1.49096 1.47947 1.22187 0.99304 0.98058 0.98182 1.21419 0.98358 0.97914 0.97164 1.21515 0.97781 1.00622 0.95417 1.21980 0.98255 1.00600 0.96037 1.20263 0.90826 0.95084 0.84838 0.91646 1.43831 1.42451 1.22910 1.21301 1.20614 0.91953 0.86706 0.97195 1.19220 0.98016 1.07298 1.13331 0.91869 1.24920 0.94969 0.99121 1.00571 1.70128 0.99914 1.46620 1.37738 0.86316 0.77317 0.80687 0.83024 1.20543 1.22049 1.21840 0.89902 0.88631 0.88424 0.80080 0.91672 0.92682 0.93122 0.91629 0.92911 0.92720 0.91353 0.92545 0.97907 0.95256 0.95199 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 13.93 29.02 0.40 -2.97 16 2 C -0.15 -2.99 8.37 -36.02 -0.30 -3.29 16 3 C 0.15 2.67 0.69 -91.77 -0.06 2.61 16 4 O -0.54 -9.78 8.22 -35.23 -0.29 -10.07 16 5 C -0.14 -2.02 4.90 -26.73 -0.13 -2.15 16 6 C -0.11 -1.51 5.78 -26.73 -0.15 -1.66 16 7 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 8 C -0.13 -2.37 4.96 -26.75 -0.13 -2.51 16 9 C 0.20 4.15 1.93 -67.96 -0.13 4.01 16 10 H 0.07 1.39 7.85 -51.93 -0.41 0.98 16 11 N -0.58 -14.79 2.39 -173.52 -0.41 -15.20 16 12 C 0.18 4.65 7.21 59.84 0.43 5.09 16 13 C -0.25 -6.92 9.62 -15.06 -0.14 -7.06 16 14 H 0.06 1.74 7.79 -52.48 -0.41 1.33 16 15 C 0.00 0.07 5.08 -17.43 -0.09 -0.02 16 16 N -0.90 -26.62 10.65 55.49 0.59 -26.03 16 17 Si 0.90 22.37 29.58 -169.99 -5.03 17.34 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H 0.08 1.56 8.06 -52.48 -0.42 1.13 16 22 H 0.10 1.84 6.41 -52.49 -0.34 1.51 16 23 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 24 H 0.35 5.22 8.05 45.56 0.37 5.58 16 25 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.92 7.68 -51.93 -0.40 0.53 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.34 6.06 -51.93 -0.31 1.02 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.00 0.06 5.74 -51.93 -0.30 -0.24 16 34 H 0.03 0.82 7.16 -51.93 -0.37 0.45 16 35 H 0.03 0.84 7.22 -51.93 -0.37 0.46 16 36 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 277.78 15.07 4.19 4.19 Total: -1.00 -30.17 277.78 -6.49 -36.65 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.06 Total: 2.92 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -0.47 Total: -9.79 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.18 Total: -41.23 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.29 Total: -10.07 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.17 -6.49 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.759 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds