Wall clock time and date at job start Mon Mar 30 2020 03:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99880 * 2 1 4 4 O 1.42896 * 109.47117 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47423 * 119.99653 * 3 2 1 6 6 C 1.52998 * 109.47432 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47211 * 300.00068 * 6 5 3 8 8 C 1.53008 * 109.47009 * 59.99774 * 7 6 5 9 9 C 1.52997 * 109.47019 * 239.99598 * 3 2 1 10 10 H 1.08998 * 109.47238 * 300.00034 * 9 3 2 11 11 N 1.46497 * 109.47097 * 60.00171 * 9 3 2 12 12 C 1.46496 * 120.00309 * 64.27316 * 11 9 3 13 13 C 1.36939 * 120.00148 * 244.27728 * 11 9 3 14 14 H 1.08006 * 119.99634 * 338.63061 * 13 11 9 15 15 C 1.38814 * 120.00449 * 158.63276 * 13 11 9 16 16 N 1.31616 * 119.99906 * 346.46516 * 15 13 11 17 17 Si 1.86805 * 119.99916 * 166.46308 * 15 13 11 18 18 H 1.48498 * 109.47150 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46830 * 120.00204 * 17 15 13 20 20 H 1.48497 * 109.47039 * 239.99796 * 17 15 13 21 21 H 1.08004 * 119.99720 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00090 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00593 * 179.97438 * 2 1 3 24 24 H 0.96703 * 114.00134 * 60.00110 * 4 3 2 25 25 H 1.09012 * 109.47084 * 59.99804 * 5 3 2 26 26 H 1.09000 * 109.47075 * 300.00536 * 5 3 2 27 27 H 1.09002 * 109.47209 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.46943 * 60.00154 * 6 5 3 29 29 H 1.08998 * 109.46938 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47238 * 299.99905 * 7 6 5 31 31 H 1.09007 * 109.46735 * 59.99971 * 8 7 6 32 32 H 1.08996 * 109.46650 * 179.97438 * 8 7 6 33 33 H 1.09005 * 109.47286 * 26.06281 * 12 11 9 34 34 H 1.09004 * 109.47745 * 146.06183 * 12 11 9 35 35 H 1.09000 * 109.47728 * 266.06397 * 12 11 9 36 36 H 0.96997 * 119.99918 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 1.1349 2.3912 -0.0006 5 6 2.9430 1.3863 1.2493 6 6 3.7085 2.7111 1.2489 7 6 4.5882 2.7915 -0.0002 8 6 3.7086 2.7103 -1.2496 9 6 2.9431 1.3861 -1.2492 10 1 3.6514 0.5577 -1.2491 11 7 2.1009 1.3085 -2.4454 12 6 1.1272 2.3665 -2.7256 13 6 2.2238 0.2469 -3.3016 14 1 3.1317 -0.3380 -3.3096 15 6 1.1816 -0.0775 -4.1591 16 7 -0.0103 0.4496 -3.9752 17 14 1.4708 -1.2621 -5.5743 18 1 2.8862 -1.7112 -5.5626 19 1 0.5772 -2.4388 -5.4253 20 1 1.1785 -0.5783 -6.8597 21 1 -0.5400 -0.9354 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8501 -0.9352 0.0004 24 1 0.5432 2.4034 0.7642 25 1 3.6514 0.5578 1.2493 26 1 2.3163 1.3285 2.1392 27 1 4.3354 2.7687 2.1387 28 1 3.0004 3.5398 1.2487 29 1 5.1332 3.7355 -0.0007 30 1 5.2962 1.9628 0.0000 31 1 3.0005 3.5391 -1.2498 32 1 4.3353 2.7681 -2.1395 33 1 1.4570 3.2961 -2.2615 34 1 1.0443 2.5080 -3.8032 35 1 0.1558 2.0830 -2.3206 36 1 -0.7385 0.2232 -4.5746 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075597077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:29 Heat of formation + Delta-G solvation = -30.721100 kcal Electronic energy + Delta-G solvation = -17070.620624 eV Core-core repulsion = 14555.030729 eV Total energy + Delta-G solvation = -2515.589895 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68960 -36.80012 -35.98429 -33.46228 -33.10590 -30.51534 -29.46636 -27.81215 -24.80723 -23.67278 -22.21125 -20.47156 -20.28708 -18.61523 -17.45440 -17.16544 -16.37416 -15.77876 -15.52260 -15.23096 -14.64640 -14.32559 -13.90887 -13.59693 -13.24852 -13.00071 -12.94976 -12.76633 -12.62103 -12.31375 -12.10870 -12.06325 -11.98386 -11.65702 -11.57277 -11.26634 -11.03144 -10.57672 -10.46698 -9.92315 -8.61161 -7.71049 -5.15500 1.44142 1.46280 1.55331 1.64431 2.54445 3.38843 3.54488 3.77297 3.95996 4.01848 4.24982 4.38034 4.45273 4.54947 4.57064 4.70108 4.79828 4.97377 5.01254 5.07672 5.15137 5.23447 5.35034 5.37422 5.40175 5.48904 5.58099 5.71381 5.73040 5.86338 5.96969 6.10505 6.41320 7.10290 7.26202 8.01727 8.47327 9.30427 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034224 B = 0.010258 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.943298 B = 2728.793917 C = 3016.524853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.153 3.847 4 O -0.552 6.552 5 C -0.131 4.131 6 C -0.106 4.106 7 C -0.110 4.110 8 C -0.121 4.121 9 C 0.189 3.811 10 H 0.059 0.941 11 N -0.597 5.597 12 C 0.207 3.793 13 C -0.253 4.253 14 H 0.064 0.936 15 C -0.051 4.051 16 N -0.928 5.928 17 Si 0.956 3.044 18 H -0.268 1.268 19 H -0.296 1.296 20 H -0.296 1.296 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.370 0.630 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.020 0.980 34 H -0.005 1.005 35 H 0.004 0.996 36 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 3.146 11.838 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.180 4.180 3 C 0.110 3.890 4 O -0.358 6.358 5 C -0.169 4.169 6 C -0.144 4.144 7 C -0.148 4.148 8 C -0.160 4.160 9 C 0.081 3.919 10 H 0.077 0.923 11 N -0.318 5.318 12 C 0.062 3.938 13 C -0.383 4.383 14 H 0.082 0.918 15 C -0.246 4.246 16 N -0.575 5.575 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.223 1.223 20 H -0.223 1.223 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.114 0.886 24 H 0.218 0.782 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.014 0.986 35 H 0.022 0.978 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.488 3.263 11.165 13.319 hybrid contribution -0.776 -1.077 -0.803 1.551 sum 5.713 2.186 10.362 12.033 Atomic orbital electron populations 1.23416 0.96218 1.00882 1.01302 1.23277 0.96494 0.98718 0.99538 1.20824 0.88689 0.83314 0.96136 1.86676 1.50803 1.48912 1.49396 1.22114 0.99067 0.99125 0.96638 1.21411 0.98342 0.96892 0.97727 1.21496 0.97438 1.02139 0.93721 1.21851 0.98058 0.98279 0.97858 1.20511 0.90686 0.96260 0.84405 0.92255 1.43958 1.42747 1.22114 1.22986 1.20189 0.91175 0.87636 0.94817 1.19501 0.97781 1.07330 1.13710 0.91810 1.25596 0.94912 1.01154 1.02931 1.70285 1.00479 1.48237 1.38481 0.85360 0.77555 0.78560 0.79943 1.19291 1.22321 1.22282 0.89805 0.88754 0.88604 0.78176 0.90970 0.90713 0.90082 0.92034 0.90947 0.91774 0.92766 0.93873 0.96180 0.98580 0.97813 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.02 13.93 67.78 0.94 -6.08 16 2 C -0.16 -6.16 8.37 25.65 0.21 -5.95 16 3 C 0.15 5.31 0.69 -11.54 -0.01 5.30 16 4 O -0.55 -19.41 8.22 -148.98 -1.22 -20.64 16 5 C -0.13 -3.37 4.90 30.59 0.15 -3.22 16 6 C -0.11 -2.45 5.78 30.59 0.18 -2.27 16 7 C -0.11 -2.83 5.92 30.60 0.18 -2.65 16 8 C -0.12 -4.26 4.96 30.58 0.15 -4.11 16 9 C 0.19 7.67 1.93 44.97 0.09 7.76 16 10 H 0.06 2.46 7.85 -2.39 -0.02 2.44 16 11 N -0.60 -30.33 2.39 -702.88 -1.68 -32.01 16 12 C 0.21 10.91 7.21 127.77 0.92 11.83 16 13 C -0.25 -14.12 9.62 84.03 0.81 -13.32 16 14 H 0.06 3.50 7.79 -2.91 -0.02 3.47 16 15 C -0.05 -2.91 5.08 84.86 0.43 -2.48 16 16 N -0.93 -56.18 10.65 21.65 0.23 -55.95 16 17 Si 0.96 46.49 29.58 68.60 2.03 48.52 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 19 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 20 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 21 H 0.08 3.16 8.06 -2.91 -0.02 3.13 16 22 H 0.09 3.64 6.41 -2.91 -0.02 3.62 16 23 H 0.10 3.64 8.06 -2.91 -0.02 3.61 16 24 H 0.37 10.31 8.05 -74.06 -0.60 9.71 16 25 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.50 7.68 -2.39 -0.02 1.48 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 2.05 6.06 -2.38 -0.01 2.03 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.02 0.96 5.74 -2.38 -0.01 0.95 16 34 H 0.00 -0.27 7.16 -2.39 -0.02 -0.29 16 35 H 0.00 0.21 7.22 -2.39 -0.02 0.19 16 36 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -64.77 277.78 3.86 -60.91 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.45 Total: 14.34 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 4.06 Total: -15.18 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.45 Total: -87.96 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.22 Total: -20.64 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -64.77 3.86 -60.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.190 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds