Wall clock time and date at job start Mon Mar 30 2020 03:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99797 * 2 1 4 4 C 1.50701 * 109.47123 * 66.04873 * 3 2 1 5 5 H 1.08003 * 119.99942 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99989 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00297 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99736 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47168 * 90.00204 * 8 6 4 10 10 H 1.48500 * 109.46979 * 210.00154 * 8 6 4 11 11 H 1.48498 * 109.47371 * 329.99924 * 8 6 4 12 12 C 1.46906 * 111.00040 * 236.05024 * 2 1 3 13 13 C 1.53002 * 109.46789 * 287.80498 * 12 2 1 14 14 H 1.09008 * 109.62151 * 56.03812 * 13 12 2 15 15 C 1.53220 * 109.62848 * 295.46396 * 13 12 2 16 16 C 1.52965 * 109.40417 * 185.65956 * 15 13 12 17 17 C 1.52953 * 109.81883 * 63.59658 * 16 15 13 18 18 C 1.53229 * 109.40434 * 296.40660 * 17 16 15 19 19 C 1.51263 * 108.53847 * 54.62357 * 18 17 16 20 20 O 1.20768 * 120.84863 * 128.67816 * 19 18 17 21 21 H 1.09003 * 109.46987 * 190.53334 * 1 2 3 22 22 H 1.08999 * 109.47033 * 310.53271 * 1 2 3 23 23 H 1.08996 * 109.47096 * 70.53610 * 1 2 3 24 24 H 1.09001 * 109.47231 * 186.04787 * 3 2 1 25 25 H 1.09003 * 109.47447 * 306.04554 * 3 2 1 26 26 H 0.96998 * 120.00010 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.46820 * 167.80813 * 12 2 1 28 28 H 1.08998 * 109.47171 * 47.81074 * 12 2 1 29 29 H 1.08998 * 109.48494 * 65.68107 * 15 13 12 30 30 H 1.08998 * 109.48439 * 305.63556 * 15 13 12 31 31 H 1.09000 * 109.40783 * 303.49060 * 16 15 13 32 32 H 1.09000 * 109.41049 * 183.70383 * 16 15 13 33 33 H 1.09007 * 109.48331 * 56.38126 * 17 16 15 34 34 H 1.08993 * 109.48597 * 176.42070 * 17 16 15 35 35 H 1.09001 * 109.62507 * 174.34442 * 18 17 16 36 36 H 1.09008 * 109.62133 * 294.71675 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3491 1.5289 7 7 2.7127 4.0016 0.6154 8 14 1.5826 4.1868 3.1382 9 1 2.6587 3.9498 4.1338 10 1 1.4312 5.6465 2.9110 11 1 0.3042 3.6302 3.6491 12 6 1.9955 -0.7659 -1.1377 13 6 1.7664 -2.2594 -0.8967 14 1 0.7062 -2.4437 -0.7224 15 6 2.5788 -2.7150 0.3199 16 6 2.4586 -4.2323 0.4720 17 6 3.0762 -4.9259 -0.7433 18 6 2.2825 -4.5534 -1.9999 19 6 2.2270 -3.0454 -2.1043 20 8 2.5419 -2.4833 -3.1257 21 1 -0.3633 -1.0104 0.1879 22 1 -0.3633 0.6679 0.7811 23 1 -0.3633 0.3424 -0.9689 24 1 3.0797 1.3445 -0.1083 25 1 1.5611 1.9274 -0.8309 26 1 2.9872 4.9177 0.7775 27 1 3.0634 -0.5743 -1.2416 28 1 1.4814 -0.4619 -2.0495 29 1 2.1950 -2.2282 1.2164 30 1 3.6256 -2.4456 0.1796 31 1 1.4065 -4.5062 0.5497 32 1 2.9819 -4.5485 1.3744 33 1 4.1113 -4.6041 -0.8585 34 1 3.0449 -6.0059 -0.6004 35 1 2.7773 -4.9634 -2.8804 36 1 1.2720 -4.9557 -1.9273 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075597079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:45 Heat of formation + Delta-G solvation = -55.379101 kcal Electronic energy + Delta-G solvation = -15861.967068 eV Core-core repulsion = 13345.307922 eV Total energy + Delta-G solvation = -2516.659146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.98173 -36.82844 -35.91136 -32.75265 -31.33154 -29.08668 -27.12103 -26.09976 -23.96619 -22.12614 -21.28271 -19.96095 -18.86889 -16.35121 -15.94674 -15.57862 -14.83668 -14.60201 -14.43044 -14.18998 -13.56149 -13.49644 -13.06749 -12.89066 -12.20711 -11.96419 -11.87318 -11.60467 -11.21943 -10.95889 -10.88027 -10.76131 -10.68098 -10.59009 -10.32520 -10.30279 -9.83112 -9.29685 -9.03502 -8.42017 -7.22212 -6.00595 -4.02225 2.09374 3.33063 3.38876 3.42109 4.09439 4.44951 4.72076 4.81905 4.83712 5.07160 5.12295 5.32621 5.35277 5.45969 5.50355 5.58405 5.70371 5.82716 5.92342 6.04442 6.13755 6.15008 6.21353 6.33433 6.42818 6.53250 6.60398 6.76592 7.31984 7.38834 7.63300 7.81638 8.10856 8.22001 8.56523 9.05462 9.61772 11.10346 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044554 B = 0.005934 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.304552 B = 4717.155244 C = 4965.068067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.538 5.538 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.067 3.933 13 C -0.129 4.129 14 H 0.100 0.900 15 C -0.098 4.098 16 C -0.127 4.127 17 C -0.113 4.113 18 C -0.169 4.169 19 C 0.362 3.638 20 O -0.457 6.457 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.009 0.991 24 H 0.029 0.971 25 H -0.010 1.010 26 H 0.261 0.739 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -16.810 -1.443 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.262 5.262 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.062 4.062 13 C -0.149 4.149 14 H 0.118 0.882 15 C -0.136 4.136 16 C -0.164 4.164 17 C -0.151 4.151 18 C -0.207 4.207 19 C 0.237 3.763 20 O -0.330 6.330 21 H 0.063 0.937 22 H 0.095 0.905 23 H 0.028 0.972 24 H 0.048 0.952 25 H 0.008 0.992 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.472 -16.540 -1.591 16.682 hybrid contribution -0.493 0.920 0.063 1.046 sum -1.965 -15.620 -1.528 15.817 Atomic orbital electron populations 1.22280 0.89177 0.99978 1.00064 1.62076 1.06720 1.17758 1.39604 1.19738 0.95385 0.81574 0.96591 1.21160 1.34781 0.96920 1.01659 0.91820 1.25002 0.95354 0.97369 0.96960 1.69968 1.38392 1.11458 1.34002 0.86497 0.78816 0.78447 0.83616 1.20642 1.21364 1.19882 1.21896 1.00646 0.90978 0.92716 1.21872 1.01824 0.96447 0.94707 0.88230 1.21448 1.00070 0.93977 0.98083 1.21646 1.01204 0.96019 0.97545 1.21526 0.99519 1.00545 0.93492 1.22307 1.02876 0.95070 1.00403 1.25017 0.71836 0.91616 0.87856 1.90389 1.36568 1.74056 1.32034 0.93743 0.90473 0.97217 0.95248 0.99173 0.92934 0.91253 0.95183 0.89085 0.91840 0.91684 0.91377 0.91553 0.91223 0.89846 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.21 60.06 0.55 1.21 16 2 N -0.54 -11.60 4.26 -244.37 -1.04 -12.64 16 3 C 0.19 5.11 4.71 -4.98 -0.02 5.09 16 4 C -0.51 -14.27 8.36 -34.44 -0.29 -14.55 16 5 H 0.06 1.76 7.18 -52.48 -0.38 1.38 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.07 1.27 3.84 -3.82 -0.01 1.26 16 13 C -0.13 -1.89 2.47 -91.38 -0.23 -2.12 16 14 H 0.10 1.35 6.78 -51.92 -0.35 1.00 16 15 C -0.10 -1.30 5.05 -26.64 -0.13 -1.44 16 16 C -0.13 -1.23 5.81 -26.77 -0.16 -1.39 16 17 C -0.11 -1.01 5.94 -26.64 -0.16 -1.17 16 18 C -0.17 -1.69 6.17 -27.49 -0.17 -1.86 16 19 C 0.36 5.11 6.58 -28.48 -0.19 4.92 16 20 O -0.46 -8.16 16.79 5.99 0.10 -8.06 16 21 H 0.04 0.72 6.91 -51.93 -0.36 0.36 16 22 H 0.08 1.61 6.64 -51.93 -0.34 1.27 16 23 H 0.01 0.18 7.98 -51.93 -0.41 -0.23 16 24 H 0.03 0.84 7.86 -51.93 -0.41 0.43 16 25 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.07 1.41 7.80 -51.93 -0.41 1.00 16 28 H 0.03 0.61 7.72 -51.93 -0.40 0.21 16 29 H 0.09 1.35 7.91 -51.93 -0.41 0.94 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 288.99 15.07 4.36 4.36 Total: -1.00 -31.14 288.99 -7.76 -38.90 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -5.99 Total: -4.27 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.90 Total: -8.59 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.31 Total: -38.99 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.10 Total: -8.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.14 -7.76 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.479 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds