Wall clock time and date at job start Mon Mar 30 2020 03:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99797 * 2 1 4 4 C 1.50701 * 109.47123 * 66.04873 * 3 2 1 5 5 H 1.08003 * 119.99942 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99989 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00297 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99736 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47168 * 90.00204 * 8 6 4 10 10 H 1.48500 * 109.46979 * 210.00154 * 8 6 4 11 11 H 1.48498 * 109.47371 * 329.99924 * 8 6 4 12 12 C 1.46906 * 111.00040 * 236.05024 * 2 1 3 13 13 C 1.53002 * 109.46789 * 287.80498 * 12 2 1 14 14 H 1.09008 * 109.62151 * 56.03812 * 13 12 2 15 15 C 1.53220 * 109.62848 * 295.46396 * 13 12 2 16 16 C 1.52965 * 109.40417 * 185.65956 * 15 13 12 17 17 C 1.52953 * 109.81883 * 63.59658 * 16 15 13 18 18 C 1.53229 * 109.40434 * 296.40660 * 17 16 15 19 19 C 1.51263 * 108.53847 * 54.62357 * 18 17 16 20 20 O 1.20768 * 120.84863 * 128.67816 * 19 18 17 21 21 H 1.09003 * 109.46987 * 190.53334 * 1 2 3 22 22 H 1.08999 * 109.47033 * 310.53271 * 1 2 3 23 23 H 1.08996 * 109.47096 * 70.53610 * 1 2 3 24 24 H 1.09001 * 109.47231 * 186.04787 * 3 2 1 25 25 H 1.09003 * 109.47447 * 306.04554 * 3 2 1 26 26 H 0.96998 * 120.00010 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.46820 * 167.80813 * 12 2 1 28 28 H 1.08998 * 109.47171 * 47.81074 * 12 2 1 29 29 H 1.08998 * 109.48494 * 65.68107 * 15 13 12 30 30 H 1.08998 * 109.48439 * 305.63556 * 15 13 12 31 31 H 1.09000 * 109.40783 * 303.49060 * 16 15 13 32 32 H 1.09000 * 109.41049 * 183.70383 * 16 15 13 33 33 H 1.09007 * 109.48331 * 56.38126 * 17 16 15 34 34 H 1.08993 * 109.48597 * 176.42070 * 17 16 15 35 35 H 1.09001 * 109.62507 * 174.34442 * 18 17 16 36 36 H 1.09008 * 109.62133 * 294.71675 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3491 1.5289 7 7 2.7127 4.0016 0.6154 8 14 1.5826 4.1868 3.1382 9 1 2.6587 3.9498 4.1338 10 1 1.4312 5.6465 2.9110 11 1 0.3042 3.6302 3.6491 12 6 1.9955 -0.7659 -1.1377 13 6 1.7664 -2.2594 -0.8967 14 1 0.7062 -2.4437 -0.7224 15 6 2.5788 -2.7150 0.3199 16 6 2.4586 -4.2323 0.4720 17 6 3.0762 -4.9259 -0.7433 18 6 2.2825 -4.5534 -1.9999 19 6 2.2270 -3.0454 -2.1043 20 8 2.5419 -2.4833 -3.1257 21 1 -0.3633 -1.0104 0.1879 22 1 -0.3633 0.6679 0.7811 23 1 -0.3633 0.3424 -0.9689 24 1 3.0797 1.3445 -0.1083 25 1 1.5611 1.9274 -0.8309 26 1 2.9872 4.9177 0.7775 27 1 3.0634 -0.5743 -1.2416 28 1 1.4814 -0.4619 -2.0495 29 1 2.1950 -2.2282 1.2164 30 1 3.6256 -2.4456 0.1796 31 1 1.4065 -4.5062 0.5497 32 1 2.9819 -4.5485 1.3744 33 1 4.1113 -4.6041 -0.8585 34 1 3.0449 -6.0059 -0.6004 35 1 2.7773 -4.9634 -2.8804 36 1 1.2720 -4.9557 -1.9273 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075597079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:45 Heat of formation + Delta-G solvation = -75.668360 kcal Electronic energy + Delta-G solvation = -15862.846876 eV Core-core repulsion = 13345.307922 eV Total energy + Delta-G solvation = -2517.538954 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16269 -38.42446 -37.08823 -34.79555 -32.66973 -30.15641 -29.10557 -27.62738 -25.57712 -23.56420 -22.35402 -21.55865 -19.96619 -18.51812 -17.28131 -16.71104 -16.52706 -16.23892 -15.65034 -15.40435 -15.12352 -14.87521 -14.53104 -13.91460 -13.90080 -13.55589 -13.17800 -13.05944 -12.77216 -12.57234 -12.48369 -12.33965 -12.12531 -11.88357 -11.72413 -11.48931 -11.39904 -11.24969 -10.63378 -10.25024 -9.07914 -8.21319 -6.32606 0.97506 1.41691 1.43985 1.55042 2.39831 2.93229 3.11416 3.52917 3.71577 3.87559 3.94925 4.12153 4.29033 4.42584 4.48441 4.51350 4.59668 4.67090 4.74225 4.83180 4.93719 5.04164 5.06681 5.15726 5.16500 5.23141 5.27354 5.35477 5.49767 5.55377 5.63357 6.01186 6.27563 6.49437 6.59345 6.83924 7.37502 8.90522 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044554 B = 0.005934 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.304552 B = 4717.155244 C = 4965.068067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.534 5.534 3 C 0.205 3.795 4 C -0.521 4.521 5 H 0.070 0.930 6 C -0.003 4.003 7 N -0.939 5.939 8 Si 0.976 3.024 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.260 1.260 12 C 0.069 3.931 13 C -0.124 4.124 14 H 0.122 0.878 15 C -0.095 4.095 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.158 4.158 19 C 0.363 3.637 20 O -0.505 6.505 21 H 0.087 0.913 22 H 0.062 0.938 23 H 0.006 0.994 24 H -0.003 1.003 25 H -0.045 1.045 26 H 0.264 0.736 27 H 0.043 0.957 28 H 0.013 0.987 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 -19.309 0.220 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.258 5.258 3 C 0.079 3.921 4 C -0.559 4.559 5 H 0.089 0.911 6 C -0.200 4.200 7 N -0.580 5.580 8 Si 0.800 3.200 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.184 1.184 12 C -0.060 4.060 13 C -0.144 4.144 14 H 0.139 0.861 15 C -0.133 4.133 16 C -0.156 4.156 17 C -0.147 4.147 18 C -0.196 4.196 19 C 0.241 3.759 20 O -0.381 6.381 21 H 0.106 0.894 22 H 0.081 0.919 23 H 0.024 0.976 24 H 0.015 0.985 25 H -0.027 1.027 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.754 -19.080 0.082 19.277 hybrid contribution -0.085 1.696 -0.505 1.772 sum -2.839 -17.383 -0.423 17.619 Atomic orbital electron populations 1.22331 0.87344 1.02254 0.99358 1.62049 1.08300 1.14740 1.40685 1.19412 0.93354 0.84142 0.95202 1.21462 1.34888 0.97491 1.02047 0.91141 1.26020 0.94944 0.98115 1.00967 1.70119 1.39497 1.11940 1.36439 0.85289 0.79136 0.77053 0.78558 1.19741 1.21004 1.18362 1.21895 0.98709 0.94198 0.91194 1.21881 1.03483 0.92803 0.96187 0.86064 1.21415 0.98458 0.97118 0.96328 1.21613 1.02851 0.92566 0.98577 1.21556 0.98564 1.02373 0.92232 1.22324 1.05026 0.90849 1.01389 1.25551 0.69997 0.93913 0.86420 1.90389 1.38820 1.75400 1.33538 0.89409 0.91920 0.97589 0.98477 1.02726 0.92707 0.93787 0.96890 0.90706 0.93689 0.89677 0.90050 0.92590 0.87930 0.89202 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 9.21 127.69 1.18 2.53 16 2 N -0.53 -23.71 4.26 -927.03 -3.95 -27.66 16 3 C 0.21 11.52 4.71 85.56 0.40 11.93 16 4 C -0.52 -29.97 8.36 25.60 0.21 -29.75 16 5 H 0.07 3.88 7.18 -2.91 -0.02 3.86 16 6 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 7 N -0.94 -58.30 13.29 21.45 0.28 -58.02 16 8 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 12 C 0.07 2.74 3.84 86.30 0.33 3.07 16 13 C -0.12 -3.53 2.47 -11.29 -0.03 -3.56 16 14 H 0.12 2.93 6.78 -2.38 -0.02 2.91 16 15 C -0.10 -2.42 5.05 30.66 0.15 -2.26 16 16 C -0.12 -1.87 5.81 30.57 0.18 -1.70 16 17 C -0.11 -1.53 5.94 30.66 0.18 -1.35 16 18 C -0.16 -2.62 6.17 30.10 0.19 -2.43 16 19 C 0.36 9.88 6.58 29.46 0.19 10.07 16 20 O -0.50 -18.36 16.79 -1.47 -0.02 -18.39 16 21 H 0.09 2.61 6.91 -2.39 -0.02 2.59 16 22 H 0.06 2.59 6.64 -2.39 -0.02 2.58 16 23 H 0.01 0.22 7.98 -2.39 -0.02 0.20 16 24 H 0.00 -0.18 7.86 -2.39 -0.02 -0.20 16 25 H -0.04 -2.78 8.12 -2.39 -0.02 -2.80 16 26 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.04 1.93 7.80 -2.39 -0.02 1.92 16 28 H 0.01 0.55 7.72 -2.39 -0.02 0.53 16 29 H 0.07 2.14 7.91 -2.39 -0.02 2.12 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -71.00 288.99 2.82 -68.18 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.03 Total: 2.47 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 3.45 Total: -13.16 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -3.67 Total: -85.68 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.02 Total: -18.39 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -71.00 2.82 -68.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.492 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds