Wall clock time and date at job start Mon Mar 30 2020 03:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99696 * 2 1 4 4 C 1.50694 * 109.47694 * 66.04541 * 3 2 1 5 5 H 1.08003 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00109 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99741 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00141 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47119 * 90.00079 * 8 6 4 10 10 H 1.48499 * 109.47148 * 209.99993 * 8 6 4 11 11 H 1.48495 * 109.46842 * 329.99872 * 8 6 4 12 12 C 1.46893 * 111.00210 * 236.04236 * 2 1 3 13 13 C 1.52997 * 109.47420 * 293.95786 * 12 2 1 14 14 H 1.09004 * 109.78271 * 55.46654 * 13 12 2 15 15 C 1.53661 * 109.69491 * 176.19188 * 13 12 2 16 16 C 1.52962 * 109.32236 * 174.47252 * 15 13 12 17 17 C 1.52950 * 109.82114 * 296.26919 * 16 15 13 18 18 C 1.53236 * 109.40351 * 63.60188 * 17 16 15 19 19 C 1.51272 * 108.53294 * 305.37103 * 18 17 16 20 20 O 1.20763 * 120.84846 * 231.32025 * 19 18 17 21 21 H 1.08995 * 109.47423 * 183.95829 * 1 2 3 22 22 H 1.09007 * 109.47380 * 303.95491 * 1 2 3 23 23 H 1.09001 * 109.46977 * 63.95610 * 1 2 3 24 24 H 1.08999 * 109.46774 * 186.04702 * 3 2 1 25 25 H 1.09000 * 109.46842 * 306.03917 * 3 2 1 26 26 H 0.97005 * 119.99782 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47485 * 173.95294 * 12 2 1 28 28 H 1.09003 * 109.47016 * 53.95531 * 12 2 1 29 29 H 1.09000 * 109.62657 * 54.45491 * 15 13 12 30 30 H 1.08998 * 109.41346 * 294.36342 * 15 13 12 31 31 H 1.09001 * 109.40889 * 176.15997 * 16 15 13 32 32 H 1.09005 * 109.41092 * 56.38092 * 16 15 13 33 33 H 1.08995 * 109.48666 * 303.62366 * 17 16 15 34 34 H 1.09001 * 109.48820 * 183.57937 * 17 16 15 35 35 H 1.09002 * 109.62629 * 185.66258 * 18 17 16 36 36 H 1.09003 * 109.62563 * 65.08389 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0739 1.5117 2.0484 6 6 2.0276 3.3492 1.5287 7 7 1.7143 3.9391 2.6617 8 14 3.0020 4.2754 0.2317 9 1 2.0663 4.9798 -0.6812 10 1 3.8888 5.2664 0.8926 11 1 3.8255 3.3163 -0.5473 12 6 1.9955 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9703 14 1 0.5529 -2.3455 -0.8511 15 6 2.0965 -3.0334 -2.2030 16 6 1.8536 -4.5253 -1.9684 17 6 2.7093 -5.0123 -0.7980 18 6 2.2722 -4.2967 0.4846 19 6 2.3328 -2.8040 0.2469 20 8 2.9217 -2.0785 1.0119 21 1 -0.3634 -1.0251 0.0709 22 1 -0.3634 0.5740 0.8525 23 1 -0.3633 0.4512 -0.9233 24 1 3.0796 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 1.9895 4.8551 2.8239 27 1 3.0797 -0.6611 -1.1755 28 1 1.5612 -0.3873 -2.0627 29 1 3.1596 -2.8600 -2.3696 30 1 1.5332 -2.7063 -3.0769 31 1 2.1193 -5.0813 -2.8675 32 1 0.8004 -4.6894 -1.7403 33 1 3.7579 -4.7921 -0.9978 34 1 2.5804 -6.0878 -0.6761 35 1 2.9434 -4.5650 1.3005 36 1 1.2518 -4.5863 0.7359 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075597084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:47 Heat of formation + Delta-G solvation = -44.889723 kcal Electronic energy + Delta-G solvation = -16042.011221 eV Core-core repulsion = 13525.806928 eV Total energy + Delta-G solvation = -2516.204293 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.81807 -36.58508 -36.06144 -32.64763 -31.50351 -29.09998 -27.62731 -26.17355 -23.70874 -22.10044 -21.27013 -19.93147 -18.73045 -16.75081 -15.84635 -15.55918 -14.85831 -14.49942 -14.23485 -14.18632 -13.87801 -13.40145 -13.02722 -12.69936 -12.38783 -12.03781 -11.88164 -11.58724 -11.48295 -11.13011 -10.98288 -10.84400 -10.78140 -10.63183 -10.52143 -9.97461 -9.71182 -9.19629 -8.90242 -8.49353 -7.21677 -5.96857 -3.92735 2.47244 3.33138 3.40527 3.43979 4.28571 4.49279 4.58128 4.70149 4.77228 4.91201 5.17629 5.26181 5.34649 5.37684 5.47822 5.48255 5.68962 5.78449 5.83156 5.87787 5.96024 5.97882 6.08984 6.14303 6.25368 6.33233 6.39057 6.75093 6.91939 7.08475 7.70695 7.99764 8.05999 8.16369 8.76353 9.12742 9.65339 11.16650 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045806 B = 0.006543 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.125781 B = 4278.634303 C = 4414.018007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.520 5.520 3 C 0.165 3.835 4 C -0.502 4.502 5 H 0.080 0.920 6 C 0.066 3.934 7 N -0.903 5.903 8 Si 0.875 3.125 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.066 3.934 13 C -0.134 4.134 14 H 0.100 0.900 15 C -0.109 4.109 16 C -0.122 4.122 17 C -0.112 4.112 18 C -0.170 4.170 19 C 0.353 3.647 20 O -0.409 6.409 21 H 0.044 0.956 22 H 0.079 0.921 23 H 0.010 0.990 24 H 0.028 0.972 25 H -0.019 1.019 26 H 0.262 0.738 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 -17.360 -10.919 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.243 5.243 3 C 0.039 3.961 4 C -0.541 4.541 5 H 0.098 0.902 6 C -0.135 4.135 7 N -0.542 5.542 8 Si 0.703 3.297 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.063 4.063 13 C -0.153 4.153 14 H 0.118 0.882 15 C -0.147 4.147 16 C -0.160 4.160 17 C -0.150 4.150 18 C -0.208 4.208 19 C 0.224 3.776 20 O -0.277 6.277 21 H 0.063 0.937 22 H 0.098 0.902 23 H 0.028 0.972 24 H 0.046 0.954 25 H -0.002 1.002 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.061 -16.997 -9.955 19.698 hybrid contribution 0.121 0.960 -1.401 1.703 sum 0.182 -16.037 -11.357 19.652 Atomic orbital electron populations 1.22307 0.88884 0.99524 1.00782 1.61890 1.06585 1.16281 1.39585 1.20146 0.95207 0.83945 0.96806 1.21044 1.35094 0.96997 1.00930 0.90189 1.24897 0.95847 0.97384 0.95341 1.69903 1.47211 1.13187 1.23948 0.86856 0.80669 0.79982 0.82207 1.20452 1.21175 1.19236 1.21949 1.00391 0.91417 0.92579 1.22069 1.01875 0.96293 0.95045 0.88213 1.21625 1.01902 0.94299 0.96900 1.21561 1.00444 0.95766 0.98225 1.21495 1.00124 0.99691 0.93695 1.22346 1.03743 0.95401 0.99352 1.24512 0.77869 0.89924 0.85341 1.90519 1.32070 1.61997 1.43145 0.93725 0.90182 0.97184 0.95442 1.00162 0.92790 0.91228 0.95543 0.91519 0.91153 0.91536 0.91498 0.91639 0.91272 0.89799 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.15 60.06 0.55 1.22 16 2 N -0.52 -11.62 3.75 -244.38 -0.92 -12.54 16 3 C 0.17 4.28 3.79 -4.98 -0.02 4.26 16 4 C -0.50 -15.06 9.01 -34.44 -0.31 -15.37 16 5 H 0.08 2.61 7.37 -52.48 -0.39 2.23 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -28.67 13.96 55.43 0.77 -27.90 16 8 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 9 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 12 C 0.07 1.17 3.97 -3.83 -0.02 1.15 16 13 C -0.13 -1.85 2.40 -91.15 -0.22 -2.07 16 14 H 0.10 1.30 6.38 -51.93 -0.33 0.97 16 15 C -0.11 -1.11 5.26 -26.41 -0.14 -1.25 16 16 C -0.12 -0.99 5.80 -26.78 -0.16 -1.15 16 17 C -0.11 -0.96 5.94 -26.63 -0.16 -1.12 16 18 C -0.17 -1.88 6.17 -27.48 -0.17 -2.05 16 19 C 0.35 5.47 6.48 -28.47 -0.18 5.28 16 20 O -0.41 -8.55 16.18 6.00 0.10 -8.46 16 21 H 0.04 0.74 6.39 -51.93 -0.33 0.41 16 22 H 0.08 1.79 6.76 -51.93 -0.35 1.44 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.03 0.74 6.99 -51.93 -0.36 0.37 16 25 H -0.02 -0.49 7.55 -51.93 -0.39 -0.88 16 26 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 27 H 0.07 1.30 7.90 -51.93 -0.41 0.89 16 28 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 284.58 15.07 4.29 4.29 Total: -1.00 -33.97 284.58 -7.30 -41.27 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -5.96 Total: -5.22 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.92 Total: -9.20 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -0.14 Total: -40.44 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.10 Total: -8.46 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.97 -7.30 -41.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.616 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds