Wall clock time and date at job start Mon Mar 30 2020 03:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99696 * 2 1 4 4 C 1.50694 * 109.47694 * 66.04541 * 3 2 1 5 5 H 1.08003 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00109 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99741 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00141 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47119 * 90.00079 * 8 6 4 10 10 H 1.48499 * 109.47148 * 209.99993 * 8 6 4 11 11 H 1.48495 * 109.46842 * 329.99872 * 8 6 4 12 12 C 1.46893 * 111.00210 * 236.04236 * 2 1 3 13 13 C 1.52997 * 109.47420 * 293.95786 * 12 2 1 14 14 H 1.09004 * 109.78271 * 55.46654 * 13 12 2 15 15 C 1.53661 * 109.69491 * 176.19188 * 13 12 2 16 16 C 1.52962 * 109.32236 * 174.47252 * 15 13 12 17 17 C 1.52950 * 109.82114 * 296.26919 * 16 15 13 18 18 C 1.53236 * 109.40351 * 63.60188 * 17 16 15 19 19 C 1.51272 * 108.53294 * 305.37103 * 18 17 16 20 20 O 1.20763 * 120.84846 * 231.32025 * 19 18 17 21 21 H 1.08995 * 109.47423 * 183.95829 * 1 2 3 22 22 H 1.09007 * 109.47380 * 303.95491 * 1 2 3 23 23 H 1.09001 * 109.46977 * 63.95610 * 1 2 3 24 24 H 1.08999 * 109.46774 * 186.04702 * 3 2 1 25 25 H 1.09000 * 109.46842 * 306.03917 * 3 2 1 26 26 H 0.97005 * 119.99782 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47485 * 173.95294 * 12 2 1 28 28 H 1.09003 * 109.47016 * 53.95531 * 12 2 1 29 29 H 1.09000 * 109.62657 * 54.45491 * 15 13 12 30 30 H 1.08998 * 109.41346 * 294.36342 * 15 13 12 31 31 H 1.09001 * 109.40889 * 176.15997 * 16 15 13 32 32 H 1.09005 * 109.41092 * 56.38092 * 16 15 13 33 33 H 1.08995 * 109.48666 * 303.62366 * 17 16 15 34 34 H 1.09001 * 109.48820 * 183.57937 * 17 16 15 35 35 H 1.09002 * 109.62629 * 185.66258 * 18 17 16 36 36 H 1.09003 * 109.62563 * 65.08389 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0739 1.5117 2.0484 6 6 2.0276 3.3492 1.5287 7 7 1.7143 3.9391 2.6617 8 14 3.0020 4.2754 0.2317 9 1 2.0663 4.9798 -0.6812 10 1 3.8888 5.2664 0.8926 11 1 3.8255 3.3163 -0.5473 12 6 1.9955 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9703 14 1 0.5529 -2.3455 -0.8511 15 6 2.0965 -3.0334 -2.2030 16 6 1.8536 -4.5253 -1.9684 17 6 2.7093 -5.0123 -0.7980 18 6 2.2722 -4.2967 0.4846 19 6 2.3328 -2.8040 0.2469 20 8 2.9217 -2.0785 1.0119 21 1 -0.3634 -1.0251 0.0709 22 1 -0.3634 0.5740 0.8525 23 1 -0.3633 0.4512 -0.9233 24 1 3.0796 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 1.9895 4.8551 2.8239 27 1 3.0797 -0.6611 -1.1755 28 1 1.5612 -0.3873 -2.0627 29 1 3.1596 -2.8600 -2.3696 30 1 1.5332 -2.7063 -3.0769 31 1 2.1193 -5.0813 -2.8675 32 1 0.8004 -4.6894 -1.7403 33 1 3.7579 -4.7921 -0.9978 34 1 2.5804 -6.0878 -0.6761 35 1 2.9434 -4.5650 1.3005 36 1 1.2518 -4.5863 0.7359 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075597084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:47 Heat of formation + Delta-G solvation = -68.450917 kcal Electronic energy + Delta-G solvation = -16043.032911 eV Core-core repulsion = 13525.806928 eV Total energy + Delta-G solvation = -2517.225983 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01061 -38.21959 -37.12131 -34.75920 -32.81160 -30.30661 -29.41206 -27.63815 -25.25576 -23.19127 -22.60871 -21.41697 -19.82233 -19.00292 -17.07012 -16.76344 -16.40655 -16.25532 -15.60339 -15.41272 -15.21076 -14.80494 -14.40114 -14.05594 -13.86378 -13.51519 -13.33075 -13.06441 -12.80479 -12.60082 -12.45144 -12.30543 -12.05925 -11.82037 -11.64769 -11.54625 -11.45933 -11.21090 -10.81328 -10.07849 -8.91967 -8.30729 -6.33671 1.28301 1.29412 1.33165 1.44303 2.32043 3.01464 3.16407 3.28996 3.82409 3.91758 4.06200 4.14473 4.27251 4.42361 4.42690 4.53493 4.56996 4.63934 4.74422 4.77920 4.88162 4.96829 5.00467 5.04897 5.16285 5.17654 5.22503 5.30404 5.41410 5.52025 5.52783 5.97815 6.41051 6.66538 6.72084 6.88587 7.29390 8.86474 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045806 B = 0.006543 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.125781 B = 4278.634303 C = 4414.018007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.545 5.545 3 C 0.177 3.823 4 C -0.515 4.515 5 H 0.033 0.967 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.255 1.255 12 C 0.064 3.936 13 C -0.131 4.131 14 H 0.115 0.885 15 C -0.103 4.103 16 C -0.118 4.118 17 C -0.109 4.109 18 C -0.165 4.165 19 C 0.349 3.651 20 O -0.479 6.479 21 H 0.079 0.921 22 H 0.042 0.958 23 H 0.025 0.975 24 H 0.017 0.983 25 H -0.012 1.012 26 H 0.267 0.733 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -19.187 -13.918 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.268 5.268 3 C 0.049 3.951 4 C -0.553 4.553 5 H 0.051 0.949 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.179 1.179 12 C -0.064 4.064 13 C -0.150 4.150 14 H 0.133 0.867 15 C -0.141 4.141 16 C -0.155 4.155 17 C -0.146 4.146 18 C -0.203 4.203 19 C 0.224 3.776 20 O -0.353 6.353 21 H 0.097 0.903 22 H 0.061 0.939 23 H 0.043 0.957 24 H 0.035 0.965 25 H 0.006 0.994 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.105 -18.871 -12.982 22.905 hybrid contribution 0.107 1.448 -0.399 1.506 sum 0.002 -17.423 -13.382 21.969 Atomic orbital electron populations 1.22244 0.87618 1.01211 0.99831 1.61756 1.07923 1.14458 1.42688 1.19859 0.94609 0.86063 0.94543 1.21259 1.34749 0.97451 1.01860 0.94902 1.25892 0.96965 0.98398 0.97932 1.70062 1.48676 1.13899 1.26370 0.85661 0.79263 0.78517 0.79165 1.18613 1.20367 1.17939 1.22039 0.99318 0.93485 0.91560 1.22130 1.02527 0.93935 0.96366 0.86697 1.21648 1.01729 0.95433 0.95320 1.21573 1.01128 0.93951 0.98852 1.21536 0.99853 1.00884 0.92345 1.22365 1.05014 0.92100 1.00841 1.25385 0.75750 0.91859 0.84566 1.90510 1.35330 1.64000 1.45426 0.90266 0.93887 0.95677 0.96484 0.99403 0.92385 0.92959 0.93685 0.92095 0.89340 0.89179 0.90142 0.92302 0.88605 0.90524 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.15 127.69 1.17 2.72 16 2 N -0.54 -24.58 3.75 -927.07 -3.47 -28.06 16 3 C 0.18 9.28 3.79 85.55 0.32 9.61 16 4 C -0.51 -32.20 9.01 25.60 0.23 -31.97 16 5 H 0.03 2.29 7.37 -2.91 -0.02 2.27 16 6 C 0.00 0.31 5.47 84.65 0.46 0.77 16 7 N -0.95 -62.25 13.96 21.45 0.30 -61.96 16 8 Si 0.95 46.61 27.47 68.60 1.88 48.50 16 9 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 12 C 0.06 2.22 3.97 86.30 0.34 2.56 16 13 C -0.13 -3.34 2.40 -11.14 -0.03 -3.37 16 14 H 0.12 2.61 6.38 -2.39 -0.02 2.60 16 15 C -0.10 -1.74 5.26 30.80 0.16 -1.58 16 16 C -0.12 -1.35 5.80 30.56 0.18 -1.18 16 17 C -0.11 -1.47 5.94 30.66 0.18 -1.29 16 18 C -0.17 -3.30 6.17 30.11 0.19 -3.12 16 19 C 0.35 10.60 6.48 29.47 0.19 10.79 16 20 O -0.48 -20.80 16.18 -1.46 -0.02 -20.83 16 21 H 0.08 2.53 6.39 -2.39 -0.02 2.52 16 22 H 0.04 2.00 6.76 -2.38 -0.02 1.98 16 23 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.02 0.92 6.99 -2.39 -0.02 0.91 16 25 H -0.01 -0.58 7.55 -2.39 -0.02 -0.60 16 26 H 0.27 16.23 8.31 -92.70 -0.77 15.46 16 27 H 0.05 1.97 7.90 -2.39 -0.02 1.95 16 28 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -78.40 284.58 3.06 -75.34 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 0.98 Total: 3.06 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 3.40 Total: -16.05 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -3.18 Total: -90.01 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.02 Total: -20.83 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.88 Total: 48.50 kcal Total: -78.40 3.06 -75.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075597084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.888 kcal (2) G-P(sol) polarization free energy of solvation -78.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds