Wall clock time and date at job start Mon Mar 30 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47060 * 2 1 4 4 C 1.50700 * 109.47485 * 120.00341 * 2 1 3 5 5 H 1.07996 * 120.00722 * 119.72229 * 4 2 1 6 6 C 1.37881 * 119.99664 * 300.00261 * 4 2 1 7 7 N 1.31509 * 120.00107 * 179.72390 * 6 4 2 8 8 Si 1.86798 * 120.00021 * 359.72004 * 6 4 2 9 9 H 1.48498 * 109.47116 * 90.00269 * 8 6 4 10 10 H 1.48503 * 109.47255 * 210.00572 * 8 6 4 11 11 H 1.48497 * 109.47194 * 330.00104 * 8 6 4 12 12 N 1.46905 * 109.47267 * 240.00143 * 2 1 3 13 13 C 1.48709 * 111.00243 * 175.94172 * 12 2 1 14 14 H 1.09007 * 112.23610 * 44.77699 * 13 12 2 15 15 C 1.54601 * 104.22532 * 282.49049 * 13 12 2 16 16 C 1.54291 * 104.84229 * 334.81994 * 15 13 12 17 17 C 1.48713 * 110.99888 * 61.47250 * 12 2 1 18 18 H 1.08999 * 112.23652 * 315.22550 * 17 12 2 19 19 C 1.53711 * 107.23923 * 191.66091 * 17 12 2 20 20 C 1.53139 * 108.88568 * 295.90855 * 19 17 12 21 21 O 1.42896 * 109.43029 * 293.93739 * 20 19 17 22 22 C 1.53137 * 109.72812 * 54.01822 * 20 19 17 23 23 H 1.09002 * 109.47080 * 173.50199 * 1 2 3 24 24 H 1.08995 * 109.47528 * 293.49710 * 1 2 3 25 25 H 1.08999 * 109.47175 * 53.50180 * 1 2 3 26 26 H 0.96999 * 120.00570 * 179.97438 * 7 6 4 27 27 H 1.09003 * 110.36887 * 93.65801 * 15 13 12 28 28 H 1.09005 * 110.36554 * 215.97868 * 15 13 12 29 29 H 1.08999 * 110.36311 * 241.16299 * 16 15 13 30 30 H 1.08996 * 110.46000 * 118.88978 * 16 15 13 31 31 H 1.09000 * 109.56586 * 176.09447 * 19 17 12 32 32 H 1.08995 * 109.57103 * 55.73135 * 19 17 12 33 33 H 1.08997 * 109.38541 * 174.06591 * 20 19 17 34 34 H 0.96697 * 114.00417 * 300.25979 * 21 20 19 35 35 H 1.08996 * 109.56698 * 186.16360 * 22 20 19 36 36 H 1.09002 * 109.66844 * 65.86500 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6496 -1.5911 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 2.1331 -0.8625 3.5565 8 14 0.6317 1.2838 2.6541 9 1 -0.7979 0.8841 2.6968 10 1 0.9840 1.9966 3.9083 11 1 0.8602 2.1817 1.4937 12 7 2.0196 -0.6925 -1.1995 13 6 3.5029 -0.6278 -1.2840 14 1 3.9803 -0.8418 -0.3277 15 6 3.7926 0.8045 -1.7888 16 6 2.5168 1.2208 -2.5500 17 6 1.5722 0.0022 -2.4359 18 1 0.5210 0.2870 -2.3916 19 6 1.8687 -0.9349 -3.6177 20 6 3.3835 -1.1319 -3.7260 21 8 3.9999 0.1074 -4.0813 22 6 3.9400 -1.6107 -2.3820 23 1 -0.3633 -1.0211 -0.1163 24 1 -0.3634 0.4097 0.9424 25 1 -0.3633 0.6112 -0.8261 26 1 1.8991 -0.5310 4.4375 27 1 3.9681 1.4750 -0.9475 28 1 4.6515 0.8037 -2.4599 29 1 2.7484 1.4247 -3.5954 30 1 2.0642 2.0965 -2.0847 31 1 1.4916 -0.4911 -4.5390 32 1 1.3864 -1.8979 -3.4500 33 1 3.5976 -1.8763 -4.4929 34 1 3.6948 0.4711 -4.9237 35 1 5.0284 -1.6452 -2.4290 36 1 3.5526 -2.6046 -2.1577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082597410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:47 Heat of formation + Delta-G solvation = -21.237736 kcal Electronic energy + Delta-G solvation = -17163.370313 eV Core-core repulsion = 14648.191648 eV Total energy + Delta-G solvation = -2515.178666 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.52641 -36.29229 -33.52456 -31.55303 -30.81195 -30.57638 -27.95236 -25.16806 -23.50500 -22.78035 -20.26436 -19.59000 -18.45030 -17.04309 -16.55385 -15.86134 -14.82430 -14.35874 -13.79905 -13.33943 -13.24693 -12.91721 -12.74262 -12.36471 -12.04508 -11.99855 -11.87798 -11.34197 -10.87629 -10.83987 -10.44072 -10.40762 -10.24529 -10.09427 -9.74789 -9.51912 -9.40208 -9.01805 -8.95028 -8.52261 -7.42909 -6.02837 -4.00028 3.28508 3.39345 3.41377 4.43426 4.45950 4.77129 5.07962 5.12343 5.29036 5.43055 5.59647 5.68000 5.71925 5.76528 5.90514 6.10990 6.17131 6.31624 6.34636 6.37385 6.46820 6.53064 6.59461 6.61053 6.67125 6.81848 6.85364 6.91508 7.09727 7.33950 7.63742 7.82435 7.98892 8.09897 8.71196 9.04555 9.60168 11.10247 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043082 B = 0.009700 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.769939 B = 2885.761708 C = 3048.810165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.172 3.828 3 H 0.003 0.997 4 C -0.500 4.500 5 H 0.080 0.920 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.488 5.488 13 C 0.071 3.929 14 H 0.103 0.897 15 C -0.137 4.137 16 C -0.139 4.139 17 C 0.052 3.948 18 H 0.084 0.916 19 C -0.135 4.135 20 C 0.108 3.892 21 O -0.550 6.550 22 C -0.101 4.101 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.025 0.975 26 H 0.263 0.737 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.359 0.641 35 H 0.063 0.937 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 2.082 -14.970 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.064 3.936 3 H 0.020 0.980 4 C -0.538 4.538 5 H 0.098 0.902 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.211 5.211 13 C -0.038 4.038 14 H 0.121 0.879 15 C -0.175 4.175 16 C -0.178 4.178 17 C -0.057 4.057 18 H 0.102 0.898 19 C -0.174 4.174 20 C 0.049 3.951 21 O -0.357 6.357 22 C -0.139 4.139 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.206 0.794 35 H 0.082 0.918 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.865 1.401 -14.140 14.235 hybrid contribution -0.801 1.752 -0.225 1.940 sum 0.064 3.153 -14.365 14.707 Atomic orbital electron populations 1.22189 0.98887 1.00817 0.98364 1.19732 0.91143 0.93295 0.89385 0.97953 1.20947 1.31697 1.13218 0.87923 0.90187 1.24923 0.95914 0.96574 0.95859 1.69880 1.46053 1.40229 0.97819 0.86891 0.80665 0.83996 0.76830 1.20658 1.22569 1.19413 1.65366 1.06102 1.48716 1.00899 1.22913 0.89890 0.93051 0.97906 0.87886 1.22921 0.98834 0.97338 0.98418 1.22997 0.96016 0.97771 1.01031 1.23035 0.98518 0.92308 0.91836 0.89812 1.22321 0.96464 1.01045 0.97532 1.21776 0.91768 0.84987 0.96540 1.86872 1.68735 1.38466 1.41578 1.21777 0.99752 0.99720 0.92618 0.92285 0.93901 0.95623 0.92730 0.93457 0.89468 0.90534 0.94091 0.92520 0.90619 0.93788 0.79392 0.91834 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.40 37.15 0.31 -2.97 16 2 C 0.17 4.17 1.37 -68.87 -0.09 4.07 16 3 H 0.00 0.07 5.93 -51.93 -0.31 -0.23 16 4 C -0.50 -14.14 8.36 -34.44 -0.29 -14.43 16 5 H 0.08 2.46 7.44 -52.49 -0.39 2.07 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 8 Si 0.89 22.44 24.43 -169.99 -4.15 18.29 16 9 H -0.28 -6.90 6.81 56.52 0.38 -6.52 16 10 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 11 H -0.27 -6.63 6.53 56.52 0.37 -6.26 16 12 N -0.49 -10.19 4.81 -206.49 -0.99 -11.18 16 13 C 0.07 1.39 3.44 -65.50 -0.23 1.17 16 14 H 0.10 2.31 6.75 -51.92 -0.35 1.96 16 15 C -0.14 -2.47 5.25 -25.21 -0.13 -2.61 16 16 C -0.14 -2.32 5.26 -25.21 -0.13 -2.45 16 17 C 0.05 0.90 3.47 -65.49 -0.23 0.68 16 18 H 0.08 1.46 6.12 -51.93 -0.32 1.14 16 19 C -0.14 -1.87 5.48 -26.29 -0.14 -2.01 16 20 C 0.11 1.43 3.76 -26.59 -0.10 1.33 16 21 O -0.55 -6.91 7.48 -35.23 -0.26 -7.17 16 22 C -0.10 -1.61 5.51 -26.29 -0.14 -1.75 16 23 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 24 H 0.04 1.01 3.23 -51.93 -0.17 0.85 16 25 H 0.02 0.50 6.52 -51.93 -0.34 0.16 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.05 0.93 8.03 -51.93 -0.42 0.52 16 28 H 0.09 1.48 5.79 -51.93 -0.30 1.18 16 29 H 0.08 1.07 5.46 -51.93 -0.28 0.78 16 30 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.36 3.09 8.53 45.56 0.39 3.48 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 255.91 15.07 3.86 3.86 Total: -1.00 -30.78 255.91 -6.68 -37.46 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.62 Total: 2.82 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.27 Total: -17.07 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.22 Total: -38.19 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.26 Total: -7.17 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.15 Total: 18.29 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.78 -6.68 -37.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082597410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.222 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds