Wall clock time and date at job start Mon Mar 30 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47060 * 2 1 4 4 C 1.50700 * 109.47485 * 120.00341 * 2 1 3 5 5 H 1.07996 * 120.00722 * 119.72229 * 4 2 1 6 6 C 1.37881 * 119.99664 * 300.00261 * 4 2 1 7 7 N 1.31509 * 120.00107 * 179.72390 * 6 4 2 8 8 Si 1.86798 * 120.00021 * 359.72004 * 6 4 2 9 9 H 1.48498 * 109.47116 * 90.00269 * 8 6 4 10 10 H 1.48503 * 109.47255 * 210.00572 * 8 6 4 11 11 H 1.48497 * 109.47194 * 330.00104 * 8 6 4 12 12 N 1.46905 * 109.47267 * 240.00143 * 2 1 3 13 13 C 1.48709 * 111.00243 * 175.94172 * 12 2 1 14 14 H 1.09007 * 112.23610 * 44.77699 * 13 12 2 15 15 C 1.54601 * 104.22532 * 282.49049 * 13 12 2 16 16 C 1.54291 * 104.84229 * 334.81994 * 15 13 12 17 17 C 1.48713 * 110.99888 * 61.47250 * 12 2 1 18 18 H 1.08999 * 112.23652 * 315.22550 * 17 12 2 19 19 C 1.53711 * 107.23923 * 191.66091 * 17 12 2 20 20 C 1.53139 * 108.88568 * 295.90855 * 19 17 12 21 21 O 1.42896 * 109.43029 * 293.93739 * 20 19 17 22 22 C 1.53137 * 109.72812 * 54.01822 * 20 19 17 23 23 H 1.09002 * 109.47080 * 173.50199 * 1 2 3 24 24 H 1.08995 * 109.47528 * 293.49710 * 1 2 3 25 25 H 1.08999 * 109.47175 * 53.50180 * 1 2 3 26 26 H 0.96999 * 120.00570 * 179.97438 * 7 6 4 27 27 H 1.09003 * 110.36887 * 93.65801 * 15 13 12 28 28 H 1.09005 * 110.36554 * 215.97868 * 15 13 12 29 29 H 1.08999 * 110.36311 * 241.16299 * 16 15 13 30 30 H 1.08996 * 110.46000 * 118.88978 * 16 15 13 31 31 H 1.09000 * 109.56586 * 176.09447 * 19 17 12 32 32 H 1.08995 * 109.57103 * 55.73135 * 19 17 12 33 33 H 1.08997 * 109.38541 * 174.06591 * 20 19 17 34 34 H 0.96697 * 114.00417 * 300.25979 * 21 20 19 35 35 H 1.08996 * 109.56698 * 186.16360 * 22 20 19 36 36 H 1.09002 * 109.66844 * 65.86500 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6496 -1.5911 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 2.1331 -0.8625 3.5565 8 14 0.6317 1.2838 2.6541 9 1 -0.7979 0.8841 2.6968 10 1 0.9840 1.9966 3.9083 11 1 0.8602 2.1817 1.4937 12 7 2.0196 -0.6925 -1.1995 13 6 3.5029 -0.6278 -1.2840 14 1 3.9803 -0.8418 -0.3277 15 6 3.7926 0.8045 -1.7888 16 6 2.5168 1.2208 -2.5500 17 6 1.5722 0.0022 -2.4359 18 1 0.5210 0.2870 -2.3916 19 6 1.8687 -0.9349 -3.6177 20 6 3.3835 -1.1319 -3.7260 21 8 3.9999 0.1074 -4.0813 22 6 3.9400 -1.6107 -2.3820 23 1 -0.3633 -1.0211 -0.1163 24 1 -0.3634 0.4097 0.9424 25 1 -0.3633 0.6112 -0.8261 26 1 1.8991 -0.5310 4.4375 27 1 3.9681 1.4750 -0.9475 28 1 4.6515 0.8037 -2.4599 29 1 2.7484 1.4247 -3.5954 30 1 2.0642 2.0965 -2.0847 31 1 1.4916 -0.4911 -4.5390 32 1 1.3864 -1.8979 -3.4500 33 1 3.5976 -1.8763 -4.4929 34 1 3.6948 0.4711 -4.9237 35 1 5.0284 -1.6452 -2.4290 36 1 3.5526 -2.6046 -2.1577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082597410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:47 Heat of formation + Delta-G solvation = -45.305770 kcal Electronic energy + Delta-G solvation = -17164.413982 eV Core-core repulsion = 14648.191648 eV Total energy + Delta-G solvation = -2516.222334 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.88324 -37.60553 -35.33035 -33.42709 -32.14737 -31.92060 -29.57980 -27.20881 -24.85691 -24.19528 -21.89545 -21.05861 -19.83068 -18.75549 -18.16186 -17.39029 -16.51821 -15.90383 -15.00558 -14.97712 -14.68753 -14.63042 -14.25924 -14.25110 -13.61554 -13.32739 -13.28891 -12.83038 -12.61102 -12.48243 -12.17479 -11.97234 -11.72198 -11.70343 -11.42313 -11.18025 -11.01051 -10.74769 -10.70010 -10.10874 -9.08593 -8.30120 -6.31559 1.25125 1.31076 1.41137 2.29066 3.03565 3.26945 3.49814 3.85845 3.95887 4.18903 4.33061 4.34820 4.38981 4.47815 4.53358 4.62330 4.66735 4.73675 4.81772 4.96620 5.02139 5.12254 5.17752 5.21719 5.28959 5.35218 5.40135 5.45074 5.50524 5.64440 5.68295 6.06881 6.33114 6.72578 6.74515 7.10371 7.32758 8.86851 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043082 B = 0.009700 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.769939 B = 2885.761708 C = 3048.810165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.178 3.822 3 H -0.013 1.013 4 C -0.500 4.500 5 H 0.035 0.965 6 C 0.010 3.990 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.263 1.263 10 H -0.298 1.298 11 H -0.257 1.257 12 N -0.503 5.503 13 C 0.062 3.938 14 H 0.053 0.947 15 C -0.130 4.130 16 C -0.132 4.132 17 C 0.046 3.954 18 H 0.086 0.914 19 C -0.129 4.129 20 C 0.118 3.882 21 O -0.562 6.562 22 C -0.099 4.099 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.265 0.735 27 H 0.015 0.985 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.026 0.974 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.383 0.617 35 H 0.070 0.930 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 3.275 -18.332 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.069 3.931 3 H 0.005 0.995 4 C -0.539 4.539 5 H 0.053 0.947 6 C -0.187 4.187 7 N -0.590 5.590 8 Si 0.777 3.223 9 H -0.189 1.189 10 H -0.225 1.225 11 H -0.181 1.181 12 N -0.226 5.226 13 C -0.047 4.047 14 H 0.071 0.929 15 C -0.169 4.169 16 C -0.171 4.171 17 C -0.063 4.063 18 H 0.104 0.896 19 C -0.167 4.167 20 C 0.059 3.941 21 O -0.372 6.372 22 C -0.137 4.137 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.234 0.766 35 H 0.089 0.911 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.311 2.596 -17.547 17.741 hybrid contribution -0.328 1.307 0.799 1.566 sum -0.639 3.903 -16.748 17.209 Atomic orbital electron populations 1.22082 0.97121 1.01399 0.99181 1.19508 0.92389 0.91865 0.89322 0.99529 1.21193 1.30590 1.11868 0.90220 0.94686 1.25778 0.97543 0.99950 0.95426 1.70035 1.48085 1.42427 0.98469 0.85844 0.79420 0.80054 0.77005 1.18873 1.22544 1.18095 1.65353 1.06842 1.49084 1.01288 1.22868 0.89203 0.95445 0.97201 0.92898 1.22885 1.00711 0.95474 0.97820 1.23011 0.94468 0.96826 1.02748 1.23251 0.98657 0.93208 0.91180 0.89567 1.22327 0.96869 1.00128 0.97339 1.21608 0.91093 0.86143 0.95227 1.86762 1.68803 1.38126 1.43471 1.21727 1.00364 0.98276 0.93295 0.92468 0.94914 0.92210 0.92615 0.96634 0.87790 0.86743 0.95497 0.88506 0.91156 0.90619 0.76628 0.91113 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 8.40 71.98 0.60 -5.54 16 2 C 0.18 8.69 1.37 44.17 0.06 8.75 16 3 H -0.01 -0.66 5.93 -2.39 -0.01 -0.67 16 4 C -0.50 -29.72 8.36 25.60 0.21 -29.51 16 5 H 0.03 2.33 7.44 -2.91 -0.02 2.31 16 6 C 0.01 0.59 5.45 84.66 0.46 1.05 16 7 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 8 Si 0.95 46.88 24.43 68.60 1.68 48.55 16 9 H -0.26 -12.21 6.81 99.48 0.68 -11.54 16 10 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 11 H -0.26 -12.04 6.53 99.48 0.65 -11.39 16 12 N -0.50 -20.94 4.81 -807.20 -3.88 -24.82 16 13 C 0.06 2.48 3.44 45.35 0.16 2.63 16 14 H 0.05 2.59 6.75 -2.38 -0.02 2.57 16 15 C -0.13 -4.65 5.25 31.58 0.17 -4.48 16 16 C -0.13 -4.01 5.26 31.58 0.17 -3.84 16 17 C 0.05 1.44 3.47 45.35 0.16 1.60 16 18 H 0.09 2.68 6.12 -2.39 -0.01 2.66 16 19 C -0.13 -2.97 5.48 30.88 0.17 -2.80 16 20 C 0.12 2.64 3.76 30.69 0.12 2.75 16 21 O -0.56 -11.34 7.48 -148.98 -1.11 -12.45 16 22 C -0.10 -3.04 5.51 30.88 0.17 -2.87 16 23 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.03 1.48 3.23 -2.39 -0.01 1.48 16 25 H 0.06 2.18 6.52 -2.39 -0.02 2.17 16 26 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 27 H 0.01 0.61 8.03 -2.39 -0.02 0.60 16 28 H 0.10 3.34 5.79 -2.38 -0.01 3.33 16 29 H 0.11 2.60 5.46 -2.39 -0.01 2.59 16 30 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.38 4.12 8.53 -74.06 -0.63 3.49 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -70.48 255.91 -0.22 -70.70 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.36 Total: 11.08 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 2.44 Total: -32.26 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -3.58 Total: -85.63 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.11 Total: -12.45 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.68 Total: 48.55 kcal Total: -70.48 -0.22 -70.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082597410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.399 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds