Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 120.00382 * 2 1 4 4 C 1.50697 * 119.99906 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.50240 * 35.08130 * 4 2 1 6 6 C 1.53123 * 109.50478 * 275.00352 * 4 2 1 7 7 C 1.53120 * 109.21163 * 182.37233 * 6 4 2 8 8 C 1.53166 * 109.20873 * 57.62805 * 7 6 4 9 9 N 1.46845 * 109.55463 * 300.85535 * 8 7 6 10 10 C 1.46900 * 111.00045 * 185.84196 * 9 8 7 11 11 C 1.52994 * 109.47274 * 65.79158 * 10 9 8 12 12 C 1.50708 * 109.47180 * 180.02562 * 11 10 9 13 13 H 1.07993 * 119.99759 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99785 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00386 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99940 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47513 * 89.99532 * 16 14 12 18 18 H 1.48499 * 109.46971 * 209.99957 * 16 14 12 19 19 H 1.48502 * 109.46876 * 329.99342 * 16 14 12 20 20 C 1.46848 * 111.19518 * 61.74755 * 9 8 7 21 21 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47095 * 300.01074 * 1 2 3 23 23 H 1.09000 * 109.46507 * 60.00244 * 1 2 3 24 24 H 1.09002 * 109.52319 * 302.31026 * 6 4 2 25 25 H 1.08995 * 109.52318 * 62.43708 * 6 4 2 26 26 H 1.09004 * 109.49930 * 177.63007 * 7 6 4 27 27 H 1.08997 * 109.50353 * 297.74224 * 7 6 4 28 28 H 1.09003 * 109.44926 * 180.83262 * 8 7 6 29 29 H 1.09002 * 109.44150 * 60.87652 * 8 7 6 30 30 H 1.09007 * 109.47226 * 185.79563 * 10 9 8 31 31 H 1.09007 * 109.47336 * 305.79107 * 10 9 8 32 32 H 1.08994 * 109.47394 * 300.00018 * 11 10 9 33 33 H 1.08996 * 109.47164 * 60.00188 * 11 10 9 34 34 H 0.97000 * 120.00240 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.46097 * 178.23945 * 20 9 8 36 36 H 1.08996 * 109.46046 * 58.26729 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7143 -2.0409 -0.5896 6 6 2.4071 -1.8101 1.4387 7 6 3.2243 -3.1051 1.4371 8 6 4.5866 -2.8404 0.7891 9 7 4.3923 -2.3601 -0.5849 10 6 5.6780 -2.2278 -1.2831 11 6 6.3066 -3.6113 -1.4609 12 6 7.6259 -3.4755 -2.1766 13 1 7.9802 -2.5000 -2.4752 14 6 8.3798 -4.5967 -2.4511 15 7 7.9480 -5.7847 -2.0879 16 14 10.0154 -4.4284 -3.3376 17 1 11.1018 -4.2459 -2.3418 18 1 10.2750 -5.6543 -4.1344 19 1 9.9696 -3.2511 -4.2415 20 6 3.6501 -1.0931 -0.6045 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 2.9184 -1.0574 2.0388 25 1 1.4202 -2.0027 1.8595 26 1 3.3673 -3.4463 2.4624 27 1 2.6938 -3.8694 0.8693 28 1 5.1661 -3.7635 0.7725 29 1 5.1220 -2.0858 1.3653 30 1 5.5155 -1.7741 -2.2609 31 1 6.3467 -1.5975 -0.6969 32 1 6.4691 -4.0649 -0.4832 33 1 5.6379 -4.2415 -2.0472 34 1 8.4786 -6.5735 -2.2807 35 1 3.5493 -0.7471 -1.6333 36 1 4.1900 -0.3469 -0.0217 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082644705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = -76.499918 kcal Electronic energy + Delta-G solvation = -15658.577247 eV Core-core repulsion = 13141.002233 eV Total energy + Delta-G solvation = -2517.575014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10360 -39.24180 -35.92117 -34.43661 -32.33572 -31.41213 -30.25831 -26.91258 -25.15784 -24.15312 -22.42991 -20.96271 -20.15050 -18.62260 -17.12414 -16.71557 -16.54098 -16.08190 -15.91057 -15.77159 -15.03079 -14.84836 -14.44325 -14.15254 -14.03941 -13.53381 -13.15551 -12.98462 -12.94506 -12.83173 -12.47723 -12.38442 -12.07903 -11.85454 -11.65883 -11.53173 -11.30254 -11.16546 -10.55738 -10.40564 -9.25730 -8.21203 -6.32553 0.97923 1.39373 1.40825 1.52110 2.39157 2.81833 3.11982 3.35139 3.72347 3.80859 4.01968 4.17973 4.29847 4.37988 4.43467 4.54326 4.56599 4.65990 4.68660 4.79698 4.81087 4.95888 4.96628 5.03133 5.08403 5.15555 5.25308 5.38623 5.44636 5.65068 5.76211 6.07797 6.23024 6.31404 6.57021 6.83443 7.36353 8.90873 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050974 B = 0.005262 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.171303 B = 5319.671712 C = 5648.772588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.367 3.633 3 O -0.507 6.507 4 C -0.134 4.134 5 H 0.123 0.877 6 C -0.099 4.099 7 C -0.106 4.106 8 C 0.047 3.953 9 N -0.542 5.542 10 C 0.077 3.923 11 C 0.039 3.961 12 C -0.549 4.549 13 H 0.056 0.944 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C 0.067 3.933 21 H 0.108 0.892 22 H 0.104 0.896 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.020 0.980 30 H 0.060 0.940 31 H 0.013 0.987 32 H -0.003 1.003 33 H -0.004 1.004 34 H 0.265 0.735 35 H 0.064 0.936 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 7.461 6.801 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.245 3.755 3 O -0.383 6.383 4 C -0.153 4.153 5 H 0.141 0.859 6 C -0.136 4.136 7 C -0.144 4.144 8 C -0.081 4.081 9 N -0.266 5.266 10 C -0.050 4.050 11 C 0.002 3.998 12 C -0.587 4.587 13 H 0.074 0.926 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.061 4.061 21 H 0.127 0.873 22 H 0.122 0.878 23 H 0.118 0.882 24 H 0.071 0.929 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -15.704 7.484 6.548 18.587 hybrid contribution 1.771 0.400 -0.184 1.825 sum -13.933 7.884 6.364 17.227 Atomic orbital electron populations 1.22282 0.90558 1.06787 1.05527 1.25169 0.93842 0.88781 0.67692 1.90401 1.73364 1.36535 1.38043 1.21909 0.95568 0.97887 0.99975 0.85926 1.21460 1.02293 0.96867 0.92983 1.21581 0.93714 0.97946 1.01123 1.22227 0.98813 0.99228 0.87827 1.61967 1.19758 1.28528 1.16367 1.21985 0.88045 0.98197 0.96794 1.18900 0.93820 0.91848 0.95233 1.21612 1.05550 0.93441 1.38096 0.92586 1.25921 1.02082 0.94799 0.96544 1.70096 1.39911 0.98762 1.48120 0.85443 0.79010 0.77923 0.78635 1.19762 1.20401 1.18948 1.21900 0.94351 0.89684 1.00155 0.87301 0.87807 0.88211 0.92886 0.87438 0.89296 0.90458 0.92192 0.96199 0.92173 0.96912 0.98434 0.98529 0.92649 0.91738 0.96299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 10.33 71.24 0.74 -1.47 16 2 C 0.37 7.82 6.38 29.10 0.19 8.01 16 3 O -0.51 -15.39 16.82 -1.46 -0.02 -15.41 16 4 C -0.13 -3.06 2.53 -11.49 -0.03 -3.09 16 5 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 6 C -0.10 -1.96 5.26 30.68 0.16 -1.80 16 7 C -0.11 -2.55 6.11 30.69 0.19 -2.36 16 8 C 0.05 1.63 5.29 86.37 0.46 2.08 16 9 N -0.54 -20.58 4.66 -896.08 -4.17 -24.76 16 10 C 0.08 3.52 4.90 86.30 0.42 3.94 16 11 C 0.04 2.17 4.90 29.85 0.15 2.32 16 12 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 13 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 14 C 0.00 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 16 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 C 0.07 2.17 4.29 86.33 0.37 2.54 16 21 H 0.11 0.70 8.00 -2.39 -0.02 0.68 16 22 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.06 2.40 6.21 -2.39 -0.01 2.39 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 2.70 7.99 -2.38 -0.02 2.68 16 31 H 0.01 0.59 8.12 -2.38 -0.02 0.57 16 32 H 0.00 -0.15 6.43 -2.39 -0.02 -0.17 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 35 H 0.06 2.13 8.02 -2.38 -0.02 2.11 16 36 H 0.02 0.67 7.84 -2.39 -0.02 0.65 16 Total: -1.00 -70.81 292.12 2.47 -68.34 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.03 Total: 2.78 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.33 Total: -21.11 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -3.89 Total: -81.60 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.02 Total: -15.41 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.81 2.47 -68.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082644705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.162 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds