Wall clock time and date at job start Mon Mar 30 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99937 * 2 1 4 4 C 1.50702 * 119.99878 * 180.28365 * 2 1 3 5 5 H 1.09001 * 109.46427 * 44.69952 * 4 2 1 6 6 C 1.53039 * 109.46249 * 284.72040 * 4 2 1 7 7 C 1.53113 * 109.28001 * 180.80463 * 6 4 2 8 8 C 1.53119 * 109.15885 * 57.65355 * 7 6 4 9 9 C 1.53037 * 109.28195 * 302.34508 * 8 7 6 10 10 N 1.46844 * 109.46025 * 164.66791 * 4 2 1 11 11 C 1.46894 * 111.00118 * 305.85140 * 10 4 2 12 12 C 1.53009 * 109.47212 * 170.00125 * 11 10 4 13 13 C 1.50701 * 109.46888 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00459 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99641 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99750 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99985 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47029 * 59.99889 * 17 15 13 19 19 H 1.48493 * 109.47101 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47103 * 299.99687 * 17 15 13 21 21 H 1.09004 * 109.46986 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47178 * 119.99485 * 1 2 3 23 23 H 1.09006 * 109.46629 * 239.99681 * 1 2 3 24 24 H 1.08998 * 109.50115 * 300.75147 * 6 4 2 25 25 H 1.09001 * 109.50288 * 60.86248 * 6 4 2 26 26 H 1.08997 * 109.52367 * 177.56010 * 7 6 4 27 27 H 1.08997 * 109.52210 * 297.75480 * 7 6 4 28 28 H 1.09003 * 109.50714 * 62.28859 * 8 7 6 29 29 H 1.09000 * 109.50649 * 182.36587 * 8 7 6 30 30 H 1.08995 * 109.46393 * 179.19629 * 9 8 7 31 31 H 1.08994 * 109.46277 * 299.17949 * 9 8 7 32 32 H 1.09005 * 109.47618 * 290.00288 * 11 10 4 33 33 H 1.08995 * 109.47139 * 50.00465 * 11 10 4 34 34 H 1.08998 * 109.47181 * 300.00274 * 12 11 10 35 35 H 1.08995 * 109.46792 * 60.00127 * 12 11 10 36 36 H 0.97004 * 119.99852 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0065 5 1 1.8094 -1.9813 -0.7327 6 6 2.1979 -1.9369 1.3860 7 6 2.9814 -3.2524 1.3800 8 6 4.4247 -2.9757 0.9500 9 6 4.4228 -2.3138 -0.4299 10 7 3.6615 -1.0594 -0.3713 11 6 3.7541 -0.3277 -1.6417 12 6 5.1981 0.1265 -1.8646 13 6 5.2929 0.8777 -3.1676 14 1 4.4114 1.0176 -3.7757 15 6 6.5051 1.3865 -3.5834 16 7 7.5784 1.2166 -2.8427 17 14 6.6225 2.3182 -5.1982 18 1 5.7325 3.5059 -5.1502 19 1 8.0240 2.7589 -5.4145 20 1 6.2044 1.4309 -6.3132 21 1 -0.3633 1.0277 0.0005 22 1 -0.3633 -0.5137 -0.8900 23 1 -0.3633 -0.5139 0.8900 24 1 2.6364 -1.2554 2.1149 25 1 1.1588 -2.1335 1.6501 26 1 2.9759 -3.6842 2.3807 27 1 2.5197 -3.9481 0.6794 28 1 4.8985 -2.3105 1.6720 29 1 4.9769 -3.9143 0.9031 30 1 5.4483 -2.1025 -0.7327 31 1 3.9613 -2.9850 -1.1540 32 1 3.4479 -0.9797 -2.4598 33 1 3.1003 0.5438 -1.6076 34 1 5.5042 0.7786 -1.0466 35 1 5.8519 -0.7449 -1.8988 36 1 8.4311 1.5748 -3.1350 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082645179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:09 Heat of formation + Delta-G solvation = -45.047085 kcal Electronic energy + Delta-G solvation = -16108.417736 eV Core-core repulsion = 13592.206620 eV Total energy + Delta-G solvation = -2516.211116 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.96738 -37.54422 -34.16771 -32.41602 -31.63023 -29.34050 -29.07301 -25.11233 -23.60999 -23.03315 -20.14219 -19.90409 -19.03534 -16.49475 -15.82326 -15.40966 -14.94781 -14.63100 -14.33121 -14.07130 -13.83835 -13.25999 -12.96323 -12.80614 -12.45849 -12.10326 -11.93570 -11.83727 -11.14249 -11.11229 -10.91274 -10.72692 -10.66325 -10.50575 -10.17308 -9.74229 -9.32223 -9.10871 -8.89497 -8.24063 -7.67158 -5.91959 -3.93561 2.23595 3.38176 3.41998 3.44850 4.02925 4.44906 4.60240 4.91398 5.01055 5.08741 5.20330 5.30072 5.42935 5.43827 5.48666 5.53831 5.71770 5.81677 5.94393 5.99787 6.02532 6.05691 6.21160 6.32736 6.44315 6.58073 6.61885 7.10868 7.50235 7.61332 7.82781 7.92260 8.01099 8.18390 8.52575 9.13066 9.68987 11.19593 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.007350 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.075512 B = 3808.780074 C = 4477.377777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.346 3.654 3 O -0.420 6.420 4 C 0.036 3.964 5 H 0.058 0.942 6 C -0.103 4.103 7 C -0.117 4.117 8 C -0.119 4.119 9 C 0.055 3.945 10 N -0.522 5.522 11 C 0.052 3.948 12 C 0.033 3.967 13 C -0.519 4.519 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.015 0.985 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 -9.118 7.839 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.218 3.782 3 O -0.290 6.290 4 C -0.074 4.074 5 H 0.076 0.924 6 C -0.141 4.141 7 C -0.154 4.154 8 C -0.156 4.156 9 C -0.073 4.073 10 N -0.247 5.247 11 C -0.074 4.074 12 C -0.004 4.004 13 C -0.558 4.558 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.204 1.204 21 H 0.099 0.901 22 H 0.106 0.894 23 H 0.107 0.893 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.033 0.967 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.032 -8.208 8.205 16.717 hybrid contribution -0.294 -0.104 -1.618 1.648 sum -12.327 -8.312 6.587 16.261 Atomic orbital electron populations 1.22318 0.94828 1.04697 1.04047 1.24536 0.91298 0.90375 0.71972 1.90459 1.71561 1.34526 1.32480 1.22075 0.91690 0.95382 0.98247 0.92448 1.21482 1.00039 0.97234 0.95295 1.21549 0.96302 0.96499 1.01067 1.21624 0.96088 1.00088 0.97843 1.22138 1.00155 0.89480 0.95528 1.61921 1.07498 1.20234 1.35028 1.22564 1.03060 0.96299 0.85453 1.19029 0.88593 0.96211 0.96561 1.21156 0.94262 1.34943 1.05460 0.93023 1.24980 0.95849 0.96314 0.97156 1.69967 0.99498 1.46100 1.37767 0.86665 0.76945 0.80365 0.84055 1.20243 1.21267 1.20361 0.90081 0.89397 0.89325 0.90757 0.91539 0.91847 0.92333 0.91030 0.91839 0.89180 0.95690 0.96888 0.90572 0.95606 0.96718 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 10.25 36.01 0.37 -1.69 16 2 C 0.35 5.34 5.76 -29.03 -0.17 5.17 16 3 O -0.42 -8.59 15.01 6.00 0.09 -8.50 16 4 C 0.04 0.54 2.18 -68.87 -0.15 0.39 16 5 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.10 -1.23 5.35 -26.65 -0.14 -1.37 16 7 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 8 C -0.12 -1.61 6.09 -26.65 -0.16 -1.77 16 9 C 0.05 0.94 5.29 -3.83 -0.02 0.92 16 10 N -0.52 -10.07 4.27 -228.08 -0.97 -11.04 16 11 C 0.05 1.21 4.47 -3.82 -0.02 1.19 16 12 C 0.03 0.93 4.90 -27.88 -0.14 0.79 16 13 C -0.52 -15.51 9.11 -34.44 -0.31 -15.83 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -27.85 13.29 55.43 0.74 -27.11 16 17 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 22 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 0.67 7.95 -51.93 -0.41 0.26 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.60 7.95 -51.93 -0.41 0.18 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.77 6.21 -51.93 -0.32 1.45 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.08 1.84 5.23 -51.93 -0.27 1.57 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.01 0.42 6.43 -51.93 -0.33 0.08 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 287.62 15.07 4.33 4.33 Total: -1.00 -33.57 287.62 -7.77 -41.35 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -5.94 Total: -4.46 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.00 Total: -12.02 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.24 Total: -38.15 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.57 -7.77 -41.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.699 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds