Wall clock time and date at job start Mon Mar 30 2020 03:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20763 * 119.99937 * 2 1 4 4 C 1.50702 * 119.99878 * 180.28365 * 2 1 3 5 5 H 1.09001 * 109.46427 * 44.69952 * 4 2 1 6 6 C 1.53039 * 109.46249 * 284.72040 * 4 2 1 7 7 C 1.53113 * 109.28001 * 180.80463 * 6 4 2 8 8 C 1.53119 * 109.15885 * 57.65355 * 7 6 4 9 9 C 1.53037 * 109.28195 * 302.34508 * 8 7 6 10 10 N 1.46844 * 109.46025 * 164.66791 * 4 2 1 11 11 C 1.46894 * 111.00118 * 305.85140 * 10 4 2 12 12 C 1.53009 * 109.47212 * 170.00125 * 11 10 4 13 13 C 1.50701 * 109.46888 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00459 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99641 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99750 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99985 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47029 * 59.99889 * 17 15 13 19 19 H 1.48493 * 109.47101 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47103 * 299.99687 * 17 15 13 21 21 H 1.09004 * 109.46986 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47178 * 119.99485 * 1 2 3 23 23 H 1.09006 * 109.46629 * 239.99681 * 1 2 3 24 24 H 1.08998 * 109.50115 * 300.75147 * 6 4 2 25 25 H 1.09001 * 109.50288 * 60.86248 * 6 4 2 26 26 H 1.08997 * 109.52367 * 177.56010 * 7 6 4 27 27 H 1.08997 * 109.52210 * 297.75480 * 7 6 4 28 28 H 1.09003 * 109.50714 * 62.28859 * 8 7 6 29 29 H 1.09000 * 109.50649 * 182.36587 * 8 7 6 30 30 H 1.08995 * 109.46393 * 179.19629 * 9 8 7 31 31 H 1.08994 * 109.46277 * 299.17949 * 9 8 7 32 32 H 1.09005 * 109.47618 * 290.00288 * 11 10 4 33 33 H 1.08995 * 109.47139 * 50.00465 * 11 10 4 34 34 H 1.08998 * 109.47181 * 300.00274 * 12 11 10 35 35 H 1.08995 * 109.46792 * 60.00127 * 12 11 10 36 36 H 0.97004 * 119.99852 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0065 5 1 1.8094 -1.9813 -0.7327 6 6 2.1979 -1.9369 1.3860 7 6 2.9814 -3.2524 1.3800 8 6 4.4247 -2.9757 0.9500 9 6 4.4228 -2.3138 -0.4299 10 7 3.6615 -1.0594 -0.3713 11 6 3.7541 -0.3277 -1.6417 12 6 5.1981 0.1265 -1.8646 13 6 5.2929 0.8777 -3.1676 14 1 4.4114 1.0176 -3.7757 15 6 6.5051 1.3865 -3.5834 16 7 7.5784 1.2166 -2.8427 17 14 6.6225 2.3182 -5.1982 18 1 5.7325 3.5059 -5.1502 19 1 8.0240 2.7589 -5.4145 20 1 6.2044 1.4309 -6.3132 21 1 -0.3633 1.0277 0.0005 22 1 -0.3633 -0.5137 -0.8900 23 1 -0.3633 -0.5139 0.8900 24 1 2.6364 -1.2554 2.1149 25 1 1.1588 -2.1335 1.6501 26 1 2.9759 -3.6842 2.3807 27 1 2.5197 -3.9481 0.6794 28 1 4.8985 -2.3105 1.6720 29 1 4.9769 -3.9143 0.9031 30 1 5.4483 -2.1025 -0.7327 31 1 3.9613 -2.9850 -1.1540 32 1 3.4479 -0.9797 -2.4598 33 1 3.1003 0.5438 -1.6076 34 1 5.5042 0.7786 -1.0466 35 1 5.8519 -0.7449 -1.8988 36 1 8.4311 1.5748 -3.1350 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082645179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:08 Heat of formation + Delta-G solvation = -68.200036 kcal Electronic energy + Delta-G solvation = -16109.421724 eV Core-core repulsion = 13592.206620 eV Total energy + Delta-G solvation = -2517.215104 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26291 -38.86014 -35.95837 -34.32934 -32.80444 -31.01319 -30.31627 -26.93577 -24.79775 -24.70957 -21.96845 -21.04925 -20.26996 -18.62273 -17.16998 -16.86515 -16.57409 -16.12234 -15.75511 -15.50214 -15.08095 -14.51351 -14.43804 -14.15409 -13.93029 -13.70902 -13.20656 -13.05852 -12.91765 -12.77145 -12.50327 -12.27459 -11.95730 -11.80535 -11.67333 -11.51788 -11.33099 -11.04371 -10.57675 -10.23556 -9.16612 -8.23280 -6.35607 1.06585 1.35333 1.40411 1.48233 2.37083 2.83974 3.09015 3.25176 3.86392 4.02090 4.03897 4.20664 4.26567 4.35141 4.41293 4.56369 4.58659 4.68293 4.69360 4.86684 4.92478 5.00433 5.05921 5.08158 5.19250 5.21989 5.29846 5.38948 5.48188 5.63581 5.74576 6.07886 6.25732 6.32201 6.73531 6.80425 7.33005 8.89105 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.007350 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.075512 B = 3808.780074 C = 4477.377777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.343 3.657 3 O -0.486 6.486 4 C 0.026 3.974 5 H 0.081 0.919 6 C -0.098 4.098 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.054 3.946 10 N -0.544 5.544 11 C 0.072 3.928 12 C 0.044 3.956 13 C -0.549 4.549 14 H 0.056 0.944 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.970 3.030 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.263 1.263 21 H 0.076 0.924 22 H 0.112 0.888 23 H 0.126 0.874 24 H 0.055 0.945 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.016 0.984 33 H 0.064 0.936 34 H -0.020 1.020 35 H -0.005 1.005 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.192 -10.581 7.675 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.220 3.780 3 O -0.362 6.362 4 C -0.082 4.082 5 H 0.099 0.901 6 C -0.136 4.136 7 C -0.147 4.147 8 C -0.152 4.152 9 C -0.074 4.074 10 N -0.269 5.269 11 C -0.055 4.055 12 C 0.007 3.993 13 C -0.587 4.587 14 H 0.074 0.926 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.794 3.206 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.187 1.187 21 H 0.095 0.905 22 H 0.130 0.870 23 H 0.144 0.856 24 H 0.073 0.927 25 H 0.129 0.871 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.082 0.918 34 H -0.001 1.001 35 H 0.014 0.986 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.489 -9.708 8.057 19.212 hybrid contribution 0.476 0.305 -1.510 1.612 sum -14.013 -9.403 6.547 18.101 Atomic orbital electron populations 1.22320 0.90159 1.05485 1.06839 1.25409 0.93868 0.89419 0.69258 1.90453 1.73296 1.36448 1.35962 1.22399 0.88839 0.96230 1.00780 0.90101 1.21555 1.02794 0.96872 0.92373 1.21555 0.93762 0.96407 1.03008 1.21614 0.98798 1.00061 0.94757 1.22138 0.97735 0.89121 0.98391 1.61769 1.11140 1.21377 1.32646 1.22093 0.99124 0.96529 0.87749 1.18818 0.91590 0.94392 0.94522 1.21577 0.94889 1.35883 1.06400 0.92596 1.26023 0.95191 0.97059 1.01476 1.70116 1.00198 1.46883 1.39931 0.85434 0.77409 0.78929 0.78865 1.19415 1.20305 1.18714 0.90489 0.87009 0.85588 0.92664 0.87088 0.89130 0.90523 0.92797 0.89831 0.93272 0.94580 0.96604 0.91792 1.00117 0.98636 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.27 10.25 71.24 0.73 -2.54 16 2 C 0.34 10.26 5.76 29.10 0.17 10.43 16 3 O -0.49 -20.61 15.01 -1.46 -0.02 -20.63 16 4 C 0.03 0.75 2.18 44.19 0.10 0.85 16 5 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 6 C -0.10 -2.03 5.35 30.65 0.16 -1.86 16 7 C -0.11 -2.04 6.00 30.67 0.18 -1.86 16 8 C -0.11 -2.99 6.09 30.65 0.19 -2.80 16 9 C 0.05 1.89 5.29 86.32 0.46 2.35 16 10 N -0.54 -21.56 4.27 -875.50 -3.74 -25.30 16 11 C 0.07 3.48 4.47 86.31 0.39 3.87 16 12 C 0.04 2.62 4.90 29.85 0.15 2.76 16 13 C -0.55 -34.08 9.11 25.60 0.23 -33.85 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 0.03 5.46 84.66 0.46 0.49 16 16 N -0.93 -60.05 13.29 21.45 0.28 -59.77 16 17 Si 0.97 46.65 29.54 68.60 2.03 48.68 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 21 H 0.08 1.42 8.12 -2.38 -0.02 1.41 16 22 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.13 1.25 7.95 -2.38 -0.02 1.24 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.11 1.36 7.95 -2.39 -0.02 1.34 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 2.09 6.21 -2.39 -0.01 2.08 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.02 0.73 8.12 -2.38 -0.02 0.71 16 33 H 0.06 3.24 5.23 -2.39 -0.01 3.23 16 34 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 35 H 0.00 -0.28 6.43 -2.39 -0.02 -0.30 16 36 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -78.68 287.62 2.80 -75.89 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 1.03 Total: 3.29 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 3.21 Total: -22.16 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -3.45 Total: -85.06 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.02 Total: -20.63 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -78.68 2.80 -75.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.686 kcal (2) G-P(sol) polarization free energy of solvation -78.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds