Wall clock time and date at job start Mon Mar 30 2020 03:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20761 * 119.99921 * 2 1 4 4 C 1.50703 * 119.99904 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.46816 * 174.51011 * 4 2 1 6 6 H 1.08998 * 109.46989 * 56.59212 * 5 4 2 7 7 C 1.52997 * 109.47240 * 296.59028 * 5 4 2 8 8 N 1.46897 * 109.47138 * 176.59056 * 5 4 2 9 9 C 1.46898 * 111.00444 * 185.19086 * 8 5 4 10 10 C 1.50700 * 109.47444 * 194.73366 * 9 8 5 11 11 H 1.08007 * 119.99618 * 1.84548 * 10 9 8 12 12 C 1.37875 * 119.99805 * 181.83746 * 10 9 8 13 13 N 1.31511 * 120.00154 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99747 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46764 * 90.00135 * 14 12 10 16 16 H 1.48495 * 109.47199 * 210.00443 * 14 12 10 17 17 H 1.48506 * 109.46911 * 330.00814 * 14 12 10 18 18 C 1.46901 * 110.99850 * 309.14620 * 8 5 4 19 19 C 1.53001 * 117.49720 * 145.12308 * 18 8 5 20 20 C 1.52999 * 60.00027 * 252.51024 * 19 18 8 21 21 H 1.09000 * 109.47213 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47703 * 300.00086 * 1 2 3 23 23 H 1.09004 * 109.47239 * 60.00325 * 1 2 3 24 24 H 1.08998 * 109.47218 * 294.50547 * 4 2 1 25 25 H 1.08997 * 109.46891 * 54.51413 * 4 2 1 26 26 H 1.09007 * 109.47210 * 60.00330 * 7 5 4 27 27 H 1.09003 * 109.47386 * 179.97438 * 7 5 4 28 28 H 1.08998 * 109.47280 * 300.00006 * 7 5 4 29 29 H 1.09000 * 109.47118 * 314.73779 * 9 8 5 30 30 H 1.09006 * 109.46672 * 74.73334 * 9 8 5 31 31 H 0.97002 * 119.99792 * 179.97438 * 13 12 10 32 32 H 1.08991 * 115.55346 * 290.82749 * 18 8 5 33 33 H 1.09001 * 117.50296 * 359.97438 * 19 18 8 34 34 H 1.09003 * 117.49980 * 145.02315 * 19 18 8 35 35 H 1.09004 * 117.49760 * 252.50677 * 20 19 18 36 36 H 1.08995 * 117.49934 * 107.49345 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7590 -1.0289 -0.1375 6 1 4.0817 -0.3660 0.6653 7 6 4.0328 -0.3648 -1.4884 8 7 4.4999 -2.2946 -0.0551 9 6 5.9496 -2.0575 -0.0604 10 6 6.6694 -3.3519 -0.3383 11 1 6.1056 -4.2541 -0.5248 12 6 8.0477 -3.3845 -0.3546 13 7 8.7342 -2.2861 -0.1271 14 14 8.9400 -4.9889 -0.6998 15 1 9.1671 -5.1245 -2.1611 16 1 10.2462 -4.9908 0.0064 17 1 8.1157 -6.1270 -0.2194 18 6 4.0967 -3.0644 1.1294 19 6 4.0686 -4.5891 1.0050 20 6 2.7578 -3.8025 1.0700 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 2.0730 -1.8325 0.9359 25 1 1.9255 -1.9184 -0.8359 26 1 3.4830 0.5745 -1.5496 27 1 5.1003 -0.1675 -1.5867 28 1 3.7100 -1.0276 -2.2912 29 1 6.1961 -1.3311 -0.8348 30 1 6.2581 -1.6715 0.9113 31 1 9.7038 -2.3091 -0.1382 32 1 4.3969 -2.6429 2.0886 33 1 4.3488 -5.0210 0.0443 34 1 4.3504 -5.1709 1.8826 35 1 2.1774 -3.8669 1.9904 36 1 2.1762 -3.7170 0.1523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082792323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:58 Heat of formation + Delta-G solvation = -7.427691 kcal Electronic energy + Delta-G solvation = -16089.610160 eV Core-core repulsion = 13575.030343 eV Total energy + Delta-G solvation = -2514.579817 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.64142 -37.83007 -34.31479 -32.88283 -31.24045 -29.86855 -27.02215 -26.25654 -22.31420 -21.92867 -21.09175 -19.40415 -19.00575 -16.44655 -15.82103 -15.38316 -15.13555 -14.61498 -14.52684 -14.37959 -13.48257 -13.06680 -12.75793 -12.33760 -12.20183 -12.09047 -11.65995 -11.42899 -11.16912 -10.94478 -10.87168 -10.72934 -10.61022 -10.23808 -10.05098 -9.57638 -9.34575 -9.10768 -9.03714 -8.34453 -7.26182 -5.95948 -3.95843 2.11400 3.35025 3.40956 3.44096 4.13751 4.45134 4.48872 4.81481 5.05626 5.23570 5.27100 5.39309 5.47441 5.52465 5.56998 5.64437 5.84027 5.95474 6.00991 6.03579 6.14190 6.24424 6.37788 6.52068 6.59197 6.68460 6.82065 6.88032 7.32708 7.42138 7.68590 7.89401 8.16922 8.26261 8.60774 9.11731 9.67289 11.15141 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037650 B = 0.007324 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.505239 B = 3822.380266 C = 4356.949004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.351 3.649 3 O -0.459 6.459 4 C -0.172 4.172 5 C 0.094 3.906 6 H 0.035 0.965 7 C -0.145 4.145 8 N -0.507 5.507 9 C 0.193 3.807 10 C -0.498 4.498 11 H 0.066 0.934 12 C 0.052 3.948 13 N -0.902 5.902 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.274 1.274 18 C 0.032 3.968 19 C -0.149 4.149 20 C -0.196 4.196 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.036 0.964 30 H -0.009 1.009 31 H 0.260 0.740 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 0.112 1.189 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.227 3.773 3 O -0.333 6.333 4 C -0.210 4.210 5 C -0.015 4.015 6 H 0.053 0.947 7 C -0.203 4.203 8 N -0.232 5.232 9 C 0.069 3.931 10 C -0.536 4.536 11 H 0.085 0.915 12 C -0.148 4.148 13 N -0.542 5.542 14 Si 0.723 3.277 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.199 1.199 18 C -0.078 4.078 19 C -0.186 4.186 20 C -0.233 4.233 21 H 0.099 0.901 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.126 0.874 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.009 0.991 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.788 0.462 0.781 14.816 hybrid contribution 0.836 -0.452 0.586 1.117 sum -13.952 0.010 1.367 14.019 Atomic orbital electron populations 1.22269 0.95152 1.04367 1.04281 1.24775 0.91633 0.90838 0.70061 1.90384 1.71815 1.35446 1.35649 1.22580 0.96827 0.96535 1.05017 1.21247 0.91022 0.91470 0.97743 0.94675 1.21919 1.02667 0.99489 0.96198 1.62060 1.08885 1.16256 1.36047 1.19782 0.79722 0.97645 0.95999 1.21214 0.90560 0.95222 1.46634 0.91550 1.24986 0.97645 0.96334 0.95842 1.69966 1.06676 1.27014 1.50533 0.86543 0.78987 0.83903 0.78235 1.20774 1.21467 1.19882 1.22061 0.98462 0.94060 0.93195 1.22874 0.98678 0.94064 1.02987 1.23201 0.91270 1.06849 1.02000 0.90121 0.89493 0.89390 0.87369 0.88188 0.92348 0.91829 0.92735 0.94612 0.99081 0.93074 0.91189 0.88081 0.89882 0.89859 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 10.33 36.00 0.37 -1.40 16 2 C 0.35 4.62 6.88 -29.04 -0.20 4.42 16 3 O -0.46 -7.79 14.83 6.00 0.09 -7.70 16 4 C -0.17 -2.40 3.73 -27.88 -0.10 -2.51 16 5 C 0.09 1.75 1.81 -67.71 -0.12 1.63 16 6 H 0.04 0.73 7.92 -51.93 -0.41 0.32 16 7 C -0.15 -2.70 8.86 37.16 0.33 -2.37 16 8 N -0.51 -10.80 4.46 -220.15 -0.98 -11.78 16 9 C 0.19 5.07 4.60 -4.98 -0.02 5.05 16 10 C -0.50 -13.90 8.63 -34.44 -0.30 -14.19 16 11 H 0.07 1.81 5.93 -52.48 -0.31 1.50 16 12 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 13 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 14 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.03 0.60 4.17 -67.71 -0.28 0.32 16 19 C -0.15 -2.62 9.43 -26.73 -0.25 -2.87 16 20 C -0.20 -2.84 7.69 -26.73 -0.21 -3.05 16 21 H 0.08 0.54 8.00 -51.93 -0.42 0.12 16 22 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.11 1.40 5.15 -51.93 -0.27 1.14 16 25 H 0.10 1.28 7.54 -51.93 -0.39 0.89 16 26 H 0.06 1.03 6.02 -51.92 -0.31 0.71 16 27 H 0.06 1.31 6.27 -51.93 -0.33 0.99 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 1.00 5.92 -51.93 -0.31 0.70 16 30 H -0.01 -0.25 8.07 -51.93 -0.42 -0.67 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.10 1.95 7.04 -51.93 -0.37 1.58 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.30 6.68 -51.93 -0.35 0.96 16 LS Contribution 286.72 15.07 4.32 4.32 Total: -1.00 -31.31 286.72 -7.28 -38.59 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.54 Total: -0.20 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -0.88 Total: -13.57 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.24 Total: -38.22 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.31 -7.28 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082792323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.162 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds