Wall clock time and date at job start Mon Mar 30 2020 03:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20761 * 119.99921 * 2 1 4 4 C 1.50703 * 119.99904 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.46816 * 174.51011 * 4 2 1 6 6 H 1.08998 * 109.46989 * 56.59212 * 5 4 2 7 7 C 1.52997 * 109.47240 * 296.59028 * 5 4 2 8 8 N 1.46897 * 109.47138 * 176.59056 * 5 4 2 9 9 C 1.46898 * 111.00444 * 185.19086 * 8 5 4 10 10 C 1.50700 * 109.47444 * 194.73366 * 9 8 5 11 11 H 1.08007 * 119.99618 * 1.84548 * 10 9 8 12 12 C 1.37875 * 119.99805 * 181.83746 * 10 9 8 13 13 N 1.31511 * 120.00154 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99747 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46764 * 90.00135 * 14 12 10 16 16 H 1.48495 * 109.47199 * 210.00443 * 14 12 10 17 17 H 1.48506 * 109.46911 * 330.00814 * 14 12 10 18 18 C 1.46901 * 110.99850 * 309.14620 * 8 5 4 19 19 C 1.53001 * 117.49720 * 145.12308 * 18 8 5 20 20 C 1.52999 * 60.00027 * 252.51024 * 19 18 8 21 21 H 1.09000 * 109.47213 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47703 * 300.00086 * 1 2 3 23 23 H 1.09004 * 109.47239 * 60.00325 * 1 2 3 24 24 H 1.08998 * 109.47218 * 294.50547 * 4 2 1 25 25 H 1.08997 * 109.46891 * 54.51413 * 4 2 1 26 26 H 1.09007 * 109.47210 * 60.00330 * 7 5 4 27 27 H 1.09003 * 109.47386 * 179.97438 * 7 5 4 28 28 H 1.08998 * 109.47280 * 300.00006 * 7 5 4 29 29 H 1.09000 * 109.47118 * 314.73779 * 9 8 5 30 30 H 1.09006 * 109.46672 * 74.73334 * 9 8 5 31 31 H 0.97002 * 119.99792 * 179.97438 * 13 12 10 32 32 H 1.08991 * 115.55346 * 290.82749 * 18 8 5 33 33 H 1.09001 * 117.50296 * 359.97438 * 19 18 8 34 34 H 1.09003 * 117.49980 * 145.02315 * 19 18 8 35 35 H 1.09004 * 117.49760 * 252.50677 * 20 19 18 36 36 H 1.08995 * 117.49934 * 107.49345 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7590 -1.0289 -0.1375 6 1 4.0817 -0.3660 0.6653 7 6 4.0328 -0.3648 -1.4884 8 7 4.4999 -2.2946 -0.0551 9 6 5.9496 -2.0575 -0.0604 10 6 6.6694 -3.3519 -0.3383 11 1 6.1056 -4.2541 -0.5248 12 6 8.0477 -3.3845 -0.3546 13 7 8.7342 -2.2861 -0.1271 14 14 8.9400 -4.9889 -0.6998 15 1 9.1671 -5.1245 -2.1611 16 1 10.2462 -4.9908 0.0064 17 1 8.1157 -6.1270 -0.2194 18 6 4.0967 -3.0644 1.1294 19 6 4.0686 -4.5891 1.0050 20 6 2.7578 -3.8025 1.0700 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 2.0730 -1.8325 0.9359 25 1 1.9255 -1.9184 -0.8359 26 1 3.4830 0.5745 -1.5496 27 1 5.1003 -0.1675 -1.5867 28 1 3.7100 -1.0276 -2.2912 29 1 6.1961 -1.3311 -0.8348 30 1 6.2581 -1.6715 0.9113 31 1 9.7038 -2.3091 -0.1382 32 1 4.3969 -2.6429 2.0886 33 1 4.3488 -5.0210 0.0443 34 1 4.3504 -5.1709 1.8826 35 1 2.1774 -3.8669 1.9904 36 1 2.1762 -3.7170 0.1523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082792323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:58 Heat of formation + Delta-G solvation = -28.376252 kcal Electronic energy + Delta-G solvation = -16090.518558 eV Core-core repulsion = 13575.030343 eV Total energy + Delta-G solvation = -2515.488215 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87460 -39.27140 -35.81630 -34.91398 -32.67868 -31.11001 -28.57739 -27.97226 -24.28753 -23.21645 -22.56759 -20.86573 -20.25923 -18.49382 -17.14536 -16.86492 -16.51034 -16.23440 -15.90867 -15.74488 -14.98771 -14.61227 -14.31302 -13.94757 -13.36743 -13.28799 -13.02093 -12.96399 -12.81637 -12.59328 -12.47170 -12.27202 -12.20685 -11.95191 -11.74639 -11.28618 -10.98232 -10.63732 -10.50945 -10.36896 -9.06251 -8.16533 -6.25212 1.09836 1.40742 1.42686 1.53543 2.41332 2.97313 3.06138 3.16531 3.46897 3.89928 4.07019 4.20526 4.28808 4.32396 4.49092 4.51821 4.67573 4.76413 4.82648 4.83860 4.89407 4.95610 4.98368 5.09698 5.19168 5.24630 5.30173 5.32867 5.39094 5.49717 5.73275 6.09831 6.42472 6.62695 6.71819 6.91955 7.43692 8.95230 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037650 B = 0.007324 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.505239 B = 3822.380266 C = 4356.949004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.355 3.645 3 O -0.508 6.508 4 C -0.165 4.165 5 C 0.089 3.911 6 H 0.001 0.999 7 C -0.137 4.137 8 N -0.503 5.503 9 C 0.207 3.793 10 C -0.506 4.506 11 H 0.073 0.927 12 C -0.006 4.006 13 N -0.943 5.943 14 Si 0.969 3.031 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.259 1.259 18 C -0.010 4.010 19 C -0.162 4.162 20 C -0.140 4.140 21 H 0.110 0.890 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.067 0.933 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.007 0.993 30 H -0.051 1.051 31 H 0.261 0.739 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.146 -2.023 1.047 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.234 3.766 3 O -0.385 6.385 4 C -0.202 4.202 5 C -0.019 4.019 6 H 0.020 0.980 7 C -0.195 4.195 8 N -0.227 5.227 9 C 0.081 3.919 10 C -0.545 4.545 11 H 0.092 0.908 12 C -0.203 4.203 13 N -0.585 5.585 14 Si 0.793 3.207 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.183 1.183 18 C -0.119 4.119 19 C -0.199 4.199 20 C -0.177 4.177 21 H 0.129 0.871 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.025 0.975 30 H -0.033 1.033 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.139 0.861 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.782 -1.692 0.640 17.873 hybrid contribution 1.734 0.252 0.656 1.871 sum -16.048 -1.440 1.296 16.164 Atomic orbital electron populations 1.22249 0.90627 1.06789 1.05299 1.25290 0.93893 0.89387 0.68073 1.90392 1.73227 1.36764 1.38146 1.22576 0.92737 0.98085 1.06757 1.21341 0.94401 0.89839 0.96345 0.98047 1.21839 1.00456 1.00335 0.96847 1.61990 1.05844 1.17444 1.37444 1.19408 0.83485 0.96373 0.92597 1.21538 0.91082 0.95759 1.46089 0.90846 1.25967 0.98675 1.00093 0.95519 1.70125 1.06978 1.29610 1.51757 0.85387 0.77540 0.79471 0.78258 1.19987 1.21255 1.18337 1.22140 1.03667 0.94656 0.91475 1.22903 1.01700 0.92779 1.02536 1.23341 0.89262 1.00475 1.04657 0.87077 0.88341 0.88235 0.85729 0.85783 0.91380 0.95338 0.91526 0.97509 1.03342 0.93012 0.92989 0.89882 0.88893 0.86112 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 10.33 71.23 0.74 -1.78 16 2 C 0.35 8.53 6.88 29.10 0.20 8.73 16 3 O -0.51 -17.13 14.83 -1.45 -0.02 -17.15 16 4 C -0.16 -4.18 3.73 29.85 0.11 -4.07 16 5 C 0.09 3.41 1.81 44.92 0.08 3.49 16 6 H 0.00 0.07 7.92 -2.39 -0.02 0.05 16 7 C -0.14 -5.30 8.86 71.98 0.64 -4.66 16 8 N -0.50 -21.91 4.46 -850.42 -3.79 -25.69 16 9 C 0.21 11.59 4.60 85.56 0.39 11.98 16 10 C -0.51 -29.11 8.63 25.60 0.22 -28.89 16 11 H 0.07 4.04 5.93 -2.91 -0.02 4.02 16 12 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 13 N -0.94 -59.13 13.29 21.45 0.28 -58.85 16 14 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 15 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 18 C -0.01 -0.39 4.17 44.92 0.19 -0.20 16 19 C -0.16 -5.41 9.43 30.59 0.29 -5.12 16 20 C -0.14 -3.50 7.69 30.59 0.24 -3.26 16 21 H 0.11 0.81 8.00 -2.39 -0.02 0.79 16 22 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.13 2.76 5.15 -2.39 -0.01 2.75 16 25 H 0.12 2.62 7.54 -2.39 -0.02 2.60 16 26 H 0.07 2.47 6.02 -2.38 -0.01 2.45 16 27 H 0.03 1.26 6.27 -2.39 -0.01 1.24 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.01 0.42 5.92 -2.39 -0.01 0.41 16 30 H -0.05 -3.21 8.07 -2.38 -0.02 -3.22 16 31 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 3.09 7.04 -2.39 -0.02 3.07 16 34 H 0.09 2.87 8.14 -2.39 -0.02 2.86 16 35 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.12 2.49 6.68 -2.39 -0.02 2.47 16 Total: -1.00 -73.09 286.72 3.11 -69.98 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.05 Total: 8.15 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 3.55 Total: -23.65 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -3.50 Total: -84.54 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.02 Total: -17.15 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.09 3.11 -69.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082792323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.604 kcal (2) G-P(sol) polarization free energy of solvation -73.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds