Wall clock time and date at job start Mon Mar 30 2020 03:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20768 * 120.00120 * 2 1 4 4 C 1.50700 * 120.00251 * 179.97438 * 2 1 3 5 5 C 1.52998 * 109.47587 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.44664 * 301.96865 * 5 4 2 7 7 C 1.54857 * 109.45136 * 182.01858 * 5 4 2 8 8 C 1.47104 * 110.34426 * 168.72458 * 7 5 4 9 9 C 1.52572 * 114.32276 * 62.80023 * 8 7 5 10 10 C 1.50882 * 109.35016 * 274.99399 * 9 8 7 11 11 C 1.53934 * 110.09477 * 91.88604 * 10 9 8 12 12 N 1.44584 * 109.44692 * 61.91220 * 5 4 2 13 13 C 1.36933 * 118.64287 * 30.73145 * 12 5 4 14 14 H 1.08002 * 119.99940 * 50.22469 * 13 12 5 15 15 C 1.38815 * 120.00176 * 230.22762 * 13 12 5 16 16 N 1.31614 * 120.00236 * 210.05946 * 15 13 12 17 17 Si 1.86806 * 119.99801 * 30.05672 * 15 13 12 18 18 H 1.48495 * 109.47074 * 84.49832 * 17 15 13 19 19 H 1.48499 * 109.46708 * 204.49880 * 17 15 13 20 20 H 1.48502 * 109.47053 * 324.49476 * 17 15 13 21 21 H 1.08992 * 109.47411 * 240.00238 * 1 2 3 22 22 H 1.09000 * 109.47169 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46783 * 120.00030 * 1 2 3 24 24 H 1.09002 * 109.47164 * 59.99964 * 4 2 1 25 25 H 1.09001 * 109.47231 * 300.00530 * 4 2 1 26 26 H 1.09000 * 109.33225 * 288.99801 * 7 5 4 27 27 H 1.09003 * 109.33368 * 48.46955 * 7 5 4 28 28 H 1.09002 * 108.50023 * 301.55925 * 8 7 5 29 29 H 1.08994 * 108.41148 * 183.97333 * 8 7 5 30 30 H 1.09004 * 109.48938 * 155.03072 * 9 8 7 31 31 H 1.08998 * 109.49517 * 34.95768 * 9 8 7 32 32 H 1.08999 * 109.36580 * 331.69844 * 10 9 8 33 33 H 1.08998 * 109.26299 * 212.01832 * 10 9 8 34 34 H 1.08999 * 108.95041 * 198.75187 * 11 10 9 35 35 H 1.09001 * 108.94466 * 80.12624 * 11 10 9 36 36 H 0.96995 * 120.00079 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 1 4.0225 -0.4244 -0.8709 7 6 4.5384 -2.3661 -0.0497 8 6 5.9640 -2.1239 -0.3199 9 6 6.6795 -1.3159 0.7585 10 6 6.4760 0.1562 0.4979 11 6 5.2344 0.6607 1.2552 12 7 4.1203 -0.3062 1.2039 13 6 3.3932 -0.5310 2.3422 14 1 3.2159 -1.5417 2.6790 15 6 2.8840 0.5403 3.0634 16 7 2.7258 0.4408 4.3662 17 14 2.4233 2.1231 2.1848 18 1 1.0466 2.0047 1.6410 19 1 2.4815 3.2561 3.1430 20 1 3.3759 2.3667 1.0719 21 1 -0.3634 -0.5137 0.8899 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5139 -0.8901 24 1 1.9972 -1.8771 -0.8892 25 1 1.9972 -1.8763 0.8908 26 1 4.4345 -2.8791 0.9063 27 1 4.1233 -2.9926 -0.8392 28 1 6.0509 -1.5907 -1.2666 29 1 6.4640 -3.0873 -0.4194 30 1 7.7450 -1.5451 0.7378 31 1 6.2711 -1.5720 1.7361 32 1 6.3380 0.3183 -0.5711 33 1 7.3541 0.7061 0.8364 34 1 4.9074 1.6013 0.8119 35 1 5.5025 0.8367 2.2969 36 1 2.3697 1.1892 4.8701 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086500741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:54 Heat of formation + Delta-G solvation = -38.713121 kcal Electronic energy + Delta-G solvation = -17230.740022 eV Core-core repulsion = 14714.803567 eV Total energy + Delta-G solvation = -2515.936455 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79263 -39.06574 -35.42689 -34.26698 -33.20278 -31.60249 -29.21430 -27.48111 -25.25441 -24.18895 -21.18099 -21.16171 -20.32170 -18.24484 -17.23449 -16.95648 -16.64557 -16.16291 -15.62448 -15.52133 -15.22651 -14.57757 -14.48962 -13.84694 -13.60102 -13.40987 -13.22599 -13.03057 -12.83659 -12.57344 -12.33020 -12.13327 -11.74003 -11.41461 -11.31550 -11.24650 -11.17554 -10.79433 -10.51065 -10.12735 -8.29738 -8.19843 -5.64833 0.94453 1.48010 1.59630 2.03726 2.57701 2.99569 3.44282 3.54706 4.00945 4.18209 4.23016 4.26378 4.42552 4.50860 4.60113 4.61447 4.71065 4.85329 4.90652 4.93678 5.00288 5.15219 5.17143 5.25085 5.30044 5.37628 5.41401 5.47157 5.61363 5.63993 5.77205 5.98021 6.34724 6.93185 7.20371 7.78106 8.27719 8.93069 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025207 B = 0.015123 C = 0.011856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.550969 B = 1851.021040 C = 2361.175087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.343 3.657 3 O -0.483 6.483 4 C -0.160 4.160 5 C 0.180 3.820 6 H 0.042 0.958 7 C -0.127 4.127 8 C -0.104 4.104 9 C -0.105 4.105 10 C -0.123 4.123 11 C 0.142 3.858 12 N -0.589 5.589 13 C -0.250 4.250 14 H 0.039 0.961 15 C 0.008 3.992 16 N -0.932 5.932 17 Si 0.941 3.059 18 H -0.292 1.292 19 H -0.353 1.353 20 H -0.251 1.251 21 H 0.091 0.909 22 H 0.057 0.943 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.095 0.905 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.006 0.994 35 H 0.026 0.974 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 -5.829 -12.680 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.225 3.775 3 O -0.363 6.363 4 C -0.198 4.198 5 C 0.074 3.926 6 H 0.060 0.940 7 C -0.167 4.167 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.162 4.162 11 C 0.017 3.983 12 N -0.312 5.312 13 C -0.380 4.380 14 H 0.056 0.944 15 C -0.191 4.191 16 N -0.574 5.574 17 Si 0.780 3.220 18 H -0.221 1.221 19 H -0.288 1.288 20 H -0.178 1.178 21 H 0.110 0.890 22 H 0.076 0.924 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.044 0.956 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.292 -5.255 -12.576 13.691 hybrid contribution -0.595 1.232 0.563 1.480 sum 0.696 -4.023 -12.013 12.688 Atomic orbital electron populations 1.22337 0.93573 1.03818 1.05868 1.25118 0.92830 0.91062 0.68531 1.90013 1.73155 1.36424 1.36687 1.22316 0.96094 0.96522 1.04823 1.20464 0.91817 0.91955 0.88369 0.93970 1.21299 0.96349 0.97983 1.01049 1.20319 0.95714 0.99911 0.98149 1.20930 0.99496 0.94550 0.99301 1.21785 0.97011 0.97308 1.00070 1.21501 0.87969 0.91490 0.97311 1.43764 1.31952 1.48446 1.07011 1.18289 1.27936 0.91458 1.00318 0.94378 1.26274 0.97357 1.00364 0.95104 1.70129 1.47247 1.33182 1.06859 0.85885 0.80494 0.79846 0.75803 1.22064 1.28770 1.17768 0.89007 0.92403 0.85364 0.85398 0.88658 0.94118 0.89982 0.92216 0.91749 0.91346 0.94050 0.91922 0.91300 0.97623 0.95551 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.85 9.93 71.24 0.71 -5.14 16 2 C 0.34 12.96 5.48 29.10 0.16 13.12 16 3 O -0.48 -22.55 9.51 -1.47 -0.01 -22.56 16 4 C -0.16 -5.28 4.69 29.85 0.14 -5.14 16 5 C 0.18 6.71 1.63 45.98 0.07 6.78 16 6 H 0.04 1.59 7.97 -2.39 -0.02 1.57 16 7 C -0.13 -3.92 5.06 29.40 0.15 -3.77 16 8 C -0.10 -2.92 5.16 28.62 0.15 -2.77 16 9 C -0.11 -3.40 5.51 29.76 0.16 -3.24 16 10 C -0.12 -4.28 5.71 30.22 0.17 -4.10 16 11 C 0.14 6.50 4.72 86.48 0.41 6.91 16 12 N -0.59 -27.37 0.89 -674.26 -0.60 -27.97 16 13 C -0.25 -13.67 7.16 84.03 0.60 -13.07 16 14 H 0.04 2.28 7.82 -2.91 -0.02 2.26 16 15 C 0.01 0.47 5.08 84.86 0.43 0.90 16 16 N -0.93 -58.96 13.97 21.65 0.30 -58.66 16 17 Si 0.94 52.23 22.39 68.60 1.54 53.76 16 18 H -0.29 -15.79 6.06 99.48 0.60 -15.18 16 19 H -0.35 -20.69 7.11 99.48 0.71 -19.99 16 20 H -0.25 -13.95 4.41 99.48 0.44 -13.51 16 21 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 22 H 0.06 1.85 8.04 -2.39 -0.02 1.83 16 23 H 0.13 2.52 8.14 -2.38 -0.02 2.50 16 24 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 25 H 0.10 3.45 7.00 -2.39 -0.02 3.44 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.97 8.11 -2.39 -0.02 1.95 16 28 H 0.06 1.56 7.36 -2.39 -0.02 1.54 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.04 1.63 7.48 -2.39 -0.02 1.62 16 32 H 0.06 2.02 7.32 -2.39 -0.02 2.00 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.01 0.29 5.87 -2.39 -0.01 0.28 16 35 H 0.03 1.33 7.73 -2.39 -0.02 1.31 16 36 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -70.88 264.44 5.04 -65.85 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 0.66 Total: -0.89 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 3.15 Total: -9.53 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -0.30 Total: -86.62 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.01 Total: -22.56 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 1.54 Total: 53.76 kcal Total: -70.88 5.04 -65.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086500741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.132 kcal (2) G-P(sol) polarization free energy of solvation -70.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds