Wall clock time and date at job start Mon Mar 30 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99964 * 2 1 4 4 C 1.50692 * 109.47399 * 293.94836 * 3 2 1 5 5 H 1.08002 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00613 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99511 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00300 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47156 * 60.00507 * 8 6 4 10 10 H 1.48501 * 109.47112 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46876 * 300.00011 * 8 6 4 12 12 C 1.46900 * 110.99248 * 123.94943 * 2 1 3 13 13 C 1.53000 * 109.47199 * 66.05076 * 12 2 1 14 14 C 1.53000 * 109.47377 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.97081 * 305.70017 * 14 13 12 16 16 C 1.54274 * 109.98679 * 184.42801 * 14 13 12 17 17 C 1.54980 * 103.75355 * 217.49032 * 16 14 13 18 18 C 1.54889 * 102.33189 * 37.08459 * 17 16 14 19 19 C 1.51450 * 109.98114 * 66.97180 * 14 13 12 20 20 O 1.20765 * 126.34008 * 299.00225 * 19 14 13 21 21 H 1.09004 * 109.47751 * 296.04922 * 1 2 3 22 22 H 1.09008 * 109.46821 * 56.04732 * 1 2 3 23 23 H 1.09004 * 109.47426 * 176.04465 * 1 2 3 24 24 H 1.09007 * 109.47559 * 53.95509 * 3 2 1 25 25 H 1.09001 * 109.47048 * 173.94698 * 3 2 1 26 26 H 0.97003 * 119.99697 * 180.02562 * 7 6 4 27 27 H 1.08991 * 109.47774 * 306.04434 * 12 2 1 28 28 H 1.09010 * 109.46850 * 186.04254 * 12 2 1 29 29 H 1.09002 * 109.47277 * 59.99549 * 13 12 2 30 30 H 1.08999 * 109.46951 * 299.99621 * 13 12 2 31 31 H 1.09007 * 110.57280 * 336.05396 * 16 14 13 32 32 H 1.08999 * 110.56999 * 98.77406 * 16 14 13 33 33 H 1.09006 * 110.83789 * 155.29485 * 17 16 14 34 34 H 1.08998 * 110.83492 * 278.87652 * 17 16 14 35 35 H 1.08997 * 110.44613 * 81.11993 * 18 17 16 36 36 H 1.09005 * 110.43984 * 203.51202 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6371 2.0470 -1.2984 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3494 -1.5285 7 7 2.7120 4.0018 -0.6149 8 14 1.5820 4.1871 -3.1378 9 1 0.1048 4.2236 -3.2850 10 1 2.1143 5.5735 -3.1378 11 1 2.1738 3.4301 -4.2700 12 6 1.9953 -0.7659 1.1377 13 6 1.6313 -2.2426 0.9705 14 6 2.1799 -3.0404 2.1551 15 1 3.2498 -2.8608 2.2614 16 6 1.9165 -4.5458 1.9442 17 6 1.5775 -5.0631 3.3653 18 6 0.7694 -3.8844 3.9624 19 6 1.4592 -2.6416 3.4260 20 8 1.4378 -1.5402 3.9210 21 1 -0.3635 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3634 -1.0252 -0.0709 24 1 1.5611 1.9274 0.8310 25 1 3.0797 1.3443 0.1084 26 1 2.9859 4.9182 -0.7766 27 1 1.5610 -0.3872 2.0628 28 1 3.0796 -0.6611 1.1758 29 1 2.0657 -2.6214 0.0453 30 1 0.5470 -2.3474 0.9324 31 1 1.0728 -4.6964 1.2706 32 1 2.8075 -5.0400 1.5568 33 1 0.9673 -5.9650 3.3143 34 1 2.4863 -5.2407 3.9403 35 1 -0.2656 -3.9215 3.6227 36 1 0.8126 -3.9062 5.0514 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086530339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:58 Heat of formation + Delta-G solvation = -52.088196 kcal Electronic energy + Delta-G solvation = -15590.461922 eV Core-core repulsion = 13073.945480 eV Total energy + Delta-G solvation = -2516.516442 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99945 -36.81485 -36.13157 -32.83586 -31.59540 -27.92910 -27.03820 -26.37848 -24.52765 -21.82511 -21.22544 -19.84291 -18.90549 -16.66954 -16.24487 -15.92767 -14.85119 -14.51363 -14.39638 -13.90901 -13.74112 -13.54935 -12.99986 -12.86546 -12.37098 -11.92783 -11.68719 -11.49986 -11.37905 -11.15001 -10.99176 -10.91551 -10.79883 -10.50679 -10.47898 -10.25890 -9.71313 -9.22587 -9.12068 -8.37496 -7.13413 -5.96428 -3.97916 1.97452 3.37084 3.40656 3.43723 4.06018 4.35138 4.46231 4.58367 4.73103 4.93978 5.12980 5.26452 5.32160 5.38347 5.43857 5.52813 5.60971 5.72102 5.81341 5.85117 5.97240 6.05598 6.16938 6.24677 6.36870 6.55288 6.65142 6.81690 7.38284 7.44922 7.55677 7.86220 8.16727 8.28686 8.63377 9.09578 9.65758 11.14515 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.059314 B = 0.005088 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.947763 B = 5502.326686 C = 5662.969617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.542 5.542 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.045 3.955 13 C -0.099 4.099 14 C -0.151 4.151 15 H 0.102 0.898 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.184 4.184 19 C 0.367 3.633 20 O -0.434 6.434 21 H 0.009 0.991 22 H 0.073 0.927 23 H 0.044 0.956 24 H -0.010 1.010 25 H 0.029 0.971 26 H 0.261 0.739 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 -18.213 6.722 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.266 5.266 3 C 0.067 3.933 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.084 4.084 13 C -0.137 4.137 14 C -0.171 4.171 15 H 0.120 0.880 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.222 4.222 19 C 0.241 3.759 20 O -0.306 6.306 21 H 0.027 0.973 22 H 0.091 0.909 23 H 0.062 0.938 24 H 0.008 0.992 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.500 -17.649 6.588 19.004 hybrid contribution -0.428 0.915 -0.071 1.012 sum -2.928 -16.735 6.517 18.196 Atomic orbital electron populations 1.22236 0.89338 0.99248 1.00414 1.62133 1.06694 1.17813 1.39941 1.19714 0.95335 0.81713 0.96506 1.21142 1.34772 0.96930 1.01710 0.91941 1.25004 0.95368 0.97346 0.96977 1.69967 1.38414 1.11429 1.34085 0.86554 0.78657 0.78325 0.83817 1.20313 1.21372 1.20176 1.22189 1.00117 0.92550 0.93510 1.21507 1.00648 0.95356 0.96144 1.22396 1.02228 0.96577 0.95897 0.88027 1.22367 1.02493 0.93540 0.96910 1.22422 0.99965 0.97046 0.96342 1.22927 1.01433 0.95549 1.02307 1.25023 0.77364 0.88266 0.85264 1.90442 1.53835 1.25120 1.61162 0.97260 0.90853 0.93768 0.99192 0.95329 0.92919 0.94454 0.91691 0.90222 0.92000 0.90568 0.90590 0.90519 0.90924 0.88038 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.14 60.06 0.55 1.31 16 2 N -0.54 -12.47 4.75 -244.37 -1.16 -13.63 16 3 C 0.19 5.34 4.72 -4.98 -0.02 5.32 16 4 C -0.51 -14.81 8.46 -34.44 -0.29 -15.10 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.04 0.88 4.75 -3.82 -0.02 0.86 16 13 C -0.10 -1.44 4.47 -26.73 -0.12 -1.56 16 14 C -0.15 -1.76 2.87 -90.74 -0.26 -2.02 16 15 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 16 C -0.12 -0.95 6.40 -25.02 -0.16 -1.11 16 17 C -0.12 -0.84 6.95 -24.69 -0.17 -1.01 16 18 C -0.18 -1.64 6.72 -26.28 -0.18 -1.82 16 19 C 0.37 4.79 7.04 -28.06 -0.20 4.59 16 20 O -0.43 -7.59 16.01 5.99 0.10 -7.50 16 21 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 22 H 0.07 1.61 6.76 -51.92 -0.35 1.26 16 23 H 0.04 0.77 6.47 -51.93 -0.34 0.43 16 24 H -0.01 -0.29 8.12 -51.92 -0.42 -0.71 16 25 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.04 0.79 6.08 -51.93 -0.32 0.47 16 28 H 0.06 1.29 7.93 -51.92 -0.41 0.88 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.88 6.55 -51.93 -0.34 0.54 16 31 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 290.16 15.07 4.37 4.37 Total: -1.00 -32.73 290.16 -7.83 -40.56 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -5.89 Total: -4.96 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.97 Total: -9.05 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.43 Total: -40.56 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.10 Total: -7.50 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.73 -7.83 -40.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086530339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.526 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds