Wall clock time and date at job start Mon Mar 30 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99964 * 2 1 4 4 C 1.50692 * 109.47399 * 293.94836 * 3 2 1 5 5 H 1.08002 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00613 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99511 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00300 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47156 * 60.00507 * 8 6 4 10 10 H 1.48501 * 109.47112 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46876 * 300.00011 * 8 6 4 12 12 C 1.46900 * 110.99248 * 123.94943 * 2 1 3 13 13 C 1.53000 * 109.47199 * 66.05076 * 12 2 1 14 14 C 1.53000 * 109.47377 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.97081 * 305.70017 * 14 13 12 16 16 C 1.54274 * 109.98679 * 184.42801 * 14 13 12 17 17 C 1.54980 * 103.75355 * 217.49032 * 16 14 13 18 18 C 1.54889 * 102.33189 * 37.08459 * 17 16 14 19 19 C 1.51450 * 109.98114 * 66.97180 * 14 13 12 20 20 O 1.20765 * 126.34008 * 299.00225 * 19 14 13 21 21 H 1.09004 * 109.47751 * 296.04922 * 1 2 3 22 22 H 1.09008 * 109.46821 * 56.04732 * 1 2 3 23 23 H 1.09004 * 109.47426 * 176.04465 * 1 2 3 24 24 H 1.09007 * 109.47559 * 53.95509 * 3 2 1 25 25 H 1.09001 * 109.47048 * 173.94698 * 3 2 1 26 26 H 0.97003 * 119.99697 * 180.02562 * 7 6 4 27 27 H 1.08991 * 109.47774 * 306.04434 * 12 2 1 28 28 H 1.09010 * 109.46850 * 186.04254 * 12 2 1 29 29 H 1.09002 * 109.47277 * 59.99549 * 13 12 2 30 30 H 1.08999 * 109.46951 * 299.99621 * 13 12 2 31 31 H 1.09007 * 110.57280 * 336.05396 * 16 14 13 32 32 H 1.08999 * 110.56999 * 98.77406 * 16 14 13 33 33 H 1.09006 * 110.83789 * 155.29485 * 17 16 14 34 34 H 1.08998 * 110.83492 * 278.87652 * 17 16 14 35 35 H 1.08997 * 110.44613 * 81.11993 * 18 17 16 36 36 H 1.09005 * 110.43984 * 203.51202 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6371 2.0470 -1.2984 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3494 -1.5285 7 7 2.7120 4.0018 -0.6149 8 14 1.5820 4.1871 -3.1378 9 1 0.1048 4.2236 -3.2850 10 1 2.1143 5.5735 -3.1378 11 1 2.1738 3.4301 -4.2700 12 6 1.9953 -0.7659 1.1377 13 6 1.6313 -2.2426 0.9705 14 6 2.1799 -3.0404 2.1551 15 1 3.2498 -2.8608 2.2614 16 6 1.9165 -4.5458 1.9442 17 6 1.5775 -5.0631 3.3653 18 6 0.7694 -3.8844 3.9624 19 6 1.4592 -2.6416 3.4260 20 8 1.4378 -1.5402 3.9210 21 1 -0.3635 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3634 -1.0252 -0.0709 24 1 1.5611 1.9274 0.8310 25 1 3.0797 1.3443 0.1084 26 1 2.9859 4.9182 -0.7766 27 1 1.5610 -0.3872 2.0628 28 1 3.0796 -0.6611 1.1758 29 1 2.0657 -2.6214 0.0453 30 1 0.5470 -2.3474 0.9324 31 1 1.0728 -4.6964 1.2706 32 1 2.8075 -5.0400 1.5568 33 1 0.9673 -5.9650 3.3143 34 1 2.4863 -5.2407 3.9403 35 1 -0.2656 -3.9215 3.6227 36 1 0.8126 -3.9062 5.0514 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086530339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:58 Heat of formation + Delta-G solvation = -74.175493 kcal Electronic energy + Delta-G solvation = -15591.419699 eV Core-core repulsion = 13073.945480 eV Total energy + Delta-G solvation = -2517.474219 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03421 -38.48436 -37.21720 -34.87494 -32.99430 -29.49734 -28.53815 -27.60954 -26.21504 -23.57311 -22.11389 -21.41544 -19.91789 -18.52967 -17.63730 -17.03466 -16.64437 -16.03545 -15.84187 -15.42678 -15.14893 -14.74702 -14.26707 -14.01743 -13.80957 -13.58724 -13.21683 -12.92010 -12.76547 -12.62926 -12.45808 -12.36236 -12.08292 -12.02205 -11.90019 -11.59194 -11.46647 -11.15433 -10.64314 -10.26361 -9.08010 -8.22482 -6.34506 0.95161 1.39872 1.44590 1.52555 2.39185 3.09173 3.17993 3.27433 3.59322 3.81427 4.02041 4.18812 4.23982 4.31425 4.45654 4.58531 4.59610 4.66816 4.70647 4.77947 4.92517 4.98842 4.99921 5.08050 5.14634 5.19159 5.23450 5.28435 5.32880 5.46084 5.61935 6.00474 6.26974 6.55861 6.57816 6.81497 7.35593 8.89173 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.059314 B = 0.005088 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.947763 B = 5502.326686 C = 5662.969617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.544 5.544 3 C 0.206 3.794 4 C -0.526 4.526 5 H 0.068 0.932 6 C -0.003 4.003 7 N -0.939 5.939 8 Si 0.977 3.023 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.045 3.955 13 C -0.086 4.086 14 C -0.153 4.153 15 H 0.098 0.902 16 C -0.107 4.107 17 C -0.110 4.110 18 C -0.179 4.179 19 C 0.357 3.643 20 O -0.492 6.492 21 H -0.002 1.002 22 H 0.060 0.940 23 H 0.086 0.914 24 H -0.048 1.048 25 H -0.001 1.001 26 H 0.265 0.735 27 H 0.017 0.983 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -20.690 5.479 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.268 5.268 3 C 0.079 3.921 4 C -0.564 4.564 5 H 0.086 0.914 6 C -0.200 4.200 7 N -0.579 5.579 8 Si 0.801 3.199 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.189 1.189 12 C -0.083 4.083 13 C -0.124 4.124 14 C -0.172 4.172 15 H 0.116 0.884 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.216 4.216 19 C 0.235 3.765 20 O -0.368 6.368 21 H 0.016 0.984 22 H 0.079 0.921 23 H 0.105 0.895 24 H -0.030 1.030 25 H 0.017 0.983 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.514 -20.181 5.344 21.170 hybrid contribution -0.088 1.664 0.380 1.709 sum -3.602 -18.517 5.724 19.713 Atomic orbital electron populations 1.22260 0.87729 1.01581 0.99257 1.62114 1.08161 1.14982 1.41559 1.19391 0.93425 0.84192 0.95048 1.21447 1.35196 0.97677 1.02121 0.91384 1.26048 0.94833 0.98011 1.01135 1.70120 1.39324 1.11921 1.36518 0.85320 0.78909 0.77050 0.78633 1.19019 1.20795 1.18919 1.22278 0.99040 0.95585 0.91396 1.21406 1.01380 0.91608 0.98023 1.22469 1.01750 0.98955 0.94056 0.88391 1.22372 1.03738 0.90191 0.98122 1.22453 1.00363 0.96879 0.95078 1.22970 1.01990 0.93801 1.02846 1.25810 0.76680 0.88566 0.85433 1.90425 1.55917 1.27668 1.62741 0.98363 0.92070 0.89535 1.03045 0.98254 0.92624 0.96503 0.93077 0.89239 0.91082 0.89510 0.88981 0.87830 0.90235 0.86529 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.14 127.69 1.17 2.83 16 2 N -0.54 -25.68 4.75 -927.04 -4.41 -30.08 16 3 C 0.21 12.03 4.72 85.56 0.40 12.43 16 4 C -0.53 -31.41 8.46 25.60 0.22 -31.19 16 5 H 0.07 3.90 7.12 -2.91 -0.02 3.88 16 6 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 7 N -0.94 -59.30 13.29 21.45 0.28 -59.02 16 8 Si 0.98 45.50 29.54 68.60 2.03 47.53 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 12 C 0.05 1.83 4.75 86.30 0.41 2.24 16 13 C -0.09 -2.41 4.47 30.59 0.14 -2.28 16 14 C -0.15 -3.34 2.87 -10.87 -0.03 -3.37 16 15 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 16 C -0.11 -1.35 6.40 31.70 0.20 -1.15 16 17 C -0.11 -1.09 6.95 31.92 0.22 -0.87 16 18 C -0.18 -2.72 6.72 30.89 0.21 -2.52 16 19 C 0.36 9.16 7.04 29.73 0.21 9.37 16 20 O -0.49 -17.98 16.01 -1.46 -0.02 -18.00 16 21 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 22 H 0.06 2.68 6.76 -2.38 -0.02 2.66 16 23 H 0.09 2.84 6.47 -2.38 -0.02 2.83 16 24 H -0.05 -3.11 8.12 -2.38 -0.02 -3.13 16 25 H 0.00 -0.04 7.93 -2.39 -0.02 -0.06 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.02 0.75 6.08 -2.39 -0.01 0.74 16 28 H 0.05 2.15 7.93 -2.38 -0.02 2.13 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.07 1.85 6.55 -2.39 -0.02 1.84 16 31 H 0.09 0.97 7.85 -2.38 -0.02 0.95 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -74.41 290.16 2.52 -71.89 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: 1.04 Total: 1.89 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 3.61 Total: -14.21 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -4.12 Total: -89.10 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.02 Total: -18.00 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -74.41 2.52 -71.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086530339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.286 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds